Adams, Alice; Lindahl, Tomas; Klein, George
1973-01-01
High-molecular-weight DNA from cell line Raji (derived from Burkitt's lymphoma), which contains 50-60 copies of Epstein-Barr virus DNA per cell, was fractionated in neutral solution by several cycles of CsCl gradient centrifugation in fixed-angle rotors. Under the fractionation conditions used, intact Epstein-Barr virus DNA from virus particles can be separated from the less-dense cellular DNA. In contrast, a large proportion of the intrinsic Epstein-Barr virus DNA component of Raji cells remains associated with cellular DNA, as determined by nucleic acid hybridization. This interaction, which is resistant to Pronase and phenol treatment, is not the result of aggregation. When the molecular weight of Raji DNA is reduced by hydrodynamic shear, the amount of virus DNA associated with cell DNA decreases. However, some virus DNA still remains bound to fragments of cellular DNA after shearing. The association is completely destroyed in alkaline solution. Molecular weight analysis of Raji DNA after denaturation showed that the alkali-induced release of Epstein-Barr virus DNA was specific and not the result of random single-strand breaks. These data indicate that Epstein-Barr virus DNA is linearly integrated into Raji cell DNA by alkali-labile bonds. PMID:4355371
Hydrodynamic caracterization and molecular weight stimation of ultrasonically sheared DNA
International Nuclear Information System (INIS)
Garces, F.; Casal, J.I.; Garcia, A.
1981-01-01
The sedimentation coefficients and intrinsec viscosities of ultrasonically sheared calf thymus DNA have been determined. The molecular weight stimation according to this parameters have been compared with the ones obtained from the electrophoretic migration rates based on the calibration proposed using the known molecular weight restriction fragments of lambds-DNA. (author) [es
Nonlinear shear behavior of rock joints using a linearized implementation of the Barton–Bandis model
Directory of Open Access Journals (Sweden)
Simon Heru Prassetyo
2017-08-01
Full Text Available Experiments on rock joint behaviors have shown that joint surface roughness is mobilized under shearing, inducing dilation and resulting in nonlinear joint shear strength and shear stress vs. shear displacement behaviors. The Barton–Bandis (BB joint model provides the most realistic prediction for the nonlinear shear behavior of rock joints. The BB model accounts for asperity roughness and strength through the joint roughness coefficient (JRC and joint wall compressive strength (JCS parameters. Nevertheless, many computer codes for rock engineering analysis still use the constant shear strength parameters from the linear Mohr–Coulomb (M−C model, which is only appropriate for smooth and non-dilatant joints. This limitation prevents fractured rock models from capturing the nonlinearity of joint shear behavior. To bridge the BB and the M−C models, this paper aims to provide a linearized implementation of the BB model using a tangential technique to obtain the equivalent M−C parameters that can satisfy the nonlinear shear behavior of rock joints. These equivalent parameters, namely the equivalent peak cohesion, friction angle, and dilation angle, are then converted into their mobilized forms to account for the mobilization and degradation of JRC under shearing. The conversion is done by expressing JRC in the equivalent peak parameters as functions of joint shear displacement using proposed hyperbolic and logarithmic functions at the pre- and post-peak regions of shear displacement, respectively. Likewise, the pre- and post-peak joint shear stiffnesses are derived so that a complete shear stress-shear displacement relationship can be established. Verifications of the linearized implementation of the BB model show that the shear stress-shear displacement curves, the dilation behavior, and the shear strength envelopes of rock joints are consistent with available experimental and numerical results.
Yu, Guihua; Kushwaha, Amit; Lee, Jungkyu K; Shaqfeh, Eric S G; Bao, Zhenan
2011-01-25
DNA has been recently explored as a powerful tool for developing molecular scaffolds for making reproducible and reliable metal contacts to single organic semiconducting molecules. A critical step in the process of exploiting DNA-organic molecule-DNA (DOD) array structures is the controlled tethering and stretching of DNA molecules. Here we report the development of reproducible surface chemistry for tethering DNA molecules at tunable density and demonstrate shear flow processing as a rationally controlled approach for stretching/aligning DNA molecules of various lengths. Through enzymatic cleavage of λ-phage DNA to yield a series of DNA chains of various lengths from 17.3 μm down to 4.2 μm, we have investigated the flow/extension behavior of these tethered DNA molecules under different flow strengths in the flow-gradient plane. We compared Brownian dynamic simulations for the flow dynamics of tethered λ-DNA in shear, and found our flow-gradient plane experimental results matched well with our bead-spring simulations. The shear flow processing demonstrated in our studies represents a controllable approach for tethering and stretching DNA molecules of various lengths. Together with further metallization of DNA chains within DOD structures, this bottom-up approach can potentially enable efficient and reliable fabrication of large-scale nanoelectronic devices based on single organic molecules, therefore opening opportunities in both fundamental understanding of charge transport at the single molecular level and many exciting applications for ever-shrinking molecular circuits.
Anthraquinones quinizarin and danthron unwind negatively supercoiled DNA and lengthen linear DNA
International Nuclear Information System (INIS)
Verebová, Valéria; Adamcik, Jozef; Danko, Patrik; Podhradský, Dušan; Miškovský, Pavol; Staničová, Jana
2014-01-01
Highlights: • Anthraquinones quinizarin and danthron unwind negatively supercoiled DNA. • Anthraquinones quinizarin and danthron lengthen linear DNA. • Anthraquinones quinizarin and danthron possess middle binding affinity to DNA. • Anthraquinones quinizarin and danthron interact with DNA by intercalating mode. - Abstract: The intercalating drugs possess a planar aromatic chromophore unit by which they insert between DNA bases causing the distortion of classical B-DNA form. The planar tricyclic structure of anthraquinones belongs to the group of chromophore units and enables anthraquinones to bind to DNA by intercalating mode. The interactions of simple derivatives of anthraquinone, quinizarin (1,4-dihydroxyanthraquinone) and danthron (1,8-dihydroxyanthraquinone), with negatively supercoiled and linear DNA were investigated using a combination of the electrophoretic methods, fluorescence spectrophotometry and single molecule technique an atomic force microscopy. The detection of the topological change of negatively supercoiled plasmid DNA, unwinding of negatively supercoiled DNA, corresponding to appearance of DNA topoisomers with the low superhelicity and an increase of the contour length of linear DNA in the presence of quinizarin and danthron indicate the binding of both anthraquinones to DNA by intercalating mode
Anthraquinones quinizarin and danthron unwind negatively supercoiled DNA and lengthen linear DNA
Energy Technology Data Exchange (ETDEWEB)
Verebová, Valéria [Institute of Biophysics, University of Veterinary Medicine and Pharmacy, Komenského 73, 041 81 Košice (Slovakia); Adamcik, Jozef [Food and Soft Materials Science, Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 9, CH-8092 Zürich (Switzerland); Danko, Patrik; Podhradský, Dušan [Department of Biochemistry, Institute of Chemistry, Faculty of Sciences, P.J. Šafárik University, Moyzesova 11, 041 54 Košice (Slovakia); Miškovský, Pavol [Department of Biophysics, Faculty of Sciences, P.J. Šafárik University, Jesenná 5, 041 54 Košice (Slovakia); Center for Interdisciplinary Biosciences, Faculty of Sciences, P.J. Šafárik University, Jesenná 5, 041 54 Košice (Slovakia); Staničová, Jana, E-mail: jana.stanicova@uvlf.sk [Institute of Biophysics, University of Veterinary Medicine and Pharmacy, Komenského 73, 041 81 Košice (Slovakia)
2014-01-31
Highlights: • Anthraquinones quinizarin and danthron unwind negatively supercoiled DNA. • Anthraquinones quinizarin and danthron lengthen linear DNA. • Anthraquinones quinizarin and danthron possess middle binding affinity to DNA. • Anthraquinones quinizarin and danthron interact with DNA by intercalating mode. - Abstract: The intercalating drugs possess a planar aromatic chromophore unit by which they insert between DNA bases causing the distortion of classical B-DNA form. The planar tricyclic structure of anthraquinones belongs to the group of chromophore units and enables anthraquinones to bind to DNA by intercalating mode. The interactions of simple derivatives of anthraquinone, quinizarin (1,4-dihydroxyanthraquinone) and danthron (1,8-dihydroxyanthraquinone), with negatively supercoiled and linear DNA were investigated using a combination of the electrophoretic methods, fluorescence spectrophotometry and single molecule technique an atomic force microscopy. The detection of the topological change of negatively supercoiled plasmid DNA, unwinding of negatively supercoiled DNA, corresponding to appearance of DNA topoisomers with the low superhelicity and an increase of the contour length of linear DNA in the presence of quinizarin and danthron indicate the binding of both anthraquinones to DNA by intercalating mode.
Stochastic field-line wandering in magnetic turbulence with shear. I. Quasi-linear theory
Energy Technology Data Exchange (ETDEWEB)
Shalchi, A. [Department of Physics and Astronomy, University of Manitoba, Winnipeg, Manitoba R3T 2N2 (Canada); Negrea, M.; Petrisor, I. [Department of Physics, University of Craiova, Association Euratom-MEdC, 13A.I.Cuza Str, 200585 Craiova (Romania)
2016-07-15
We investigate the random walk of magnetic field lines in magnetic turbulence with shear. In the first part of the series, we develop a quasi-linear theory in order to compute the diffusion coefficient of magnetic field lines. We derive general formulas for the diffusion coefficients in the different directions of space. We like to emphasize that we expect that quasi-linear theory is only valid if the so-called Kubo number is small. We consider two turbulence models as examples, namely, a noisy slab model as well as a Gaussian decorrelation model. For both models we compute the field line diffusion coefficients and we show how they depend on the aforementioned Kubo number as well as a shear parameter. It is demonstrated that the shear effect reduces all field line diffusion coefficients.
Stochastic field-line wandering in magnetic turbulence with shear. I. Quasi-linear theory
International Nuclear Information System (INIS)
Shalchi, A.; Negrea, M.; Petrisor, I.
2016-01-01
We investigate the random walk of magnetic field lines in magnetic turbulence with shear. In the first part of the series, we develop a quasi-linear theory in order to compute the diffusion coefficient of magnetic field lines. We derive general formulas for the diffusion coefficients in the different directions of space. We like to emphasize that we expect that quasi-linear theory is only valid if the so-called Kubo number is small. We consider two turbulence models as examples, namely, a noisy slab model as well as a Gaussian decorrelation model. For both models we compute the field line diffusion coefficients and we show how they depend on the aforementioned Kubo number as well as a shear parameter. It is demonstrated that the shear effect reduces all field line diffusion coefficients.
Large-scale dynamo action due to α fluctuations in a linear shear flow
Sridhar, S.; Singh, Nishant K.
2014-12-01
We present a model of large-scale dynamo action in a shear flow that has stochastic, zero-mean fluctuations of the α parameter. This is based on a minimal extension of the Kraichnan-Moffatt model, to include a background linear shear and Galilean-invariant α-statistics. Using the first-order smoothing approximation we derive a linear integro-differential equation for the large-scale magnetic field, which is non-perturbative in the shearing rate S , and the α-correlation time τα . The white-noise case, τα = 0 , is solved exactly, and it is concluded that the necessary condition for dynamo action is identical to the Kraichnan-Moffatt model without shear; this is because white-noise does not allow for memory effects, whereas shear needs time to act. To explore memory effects we reduce the integro-differential equation to a partial differential equation, valid for slowly varying fields when τα is small but non-zero. Seeking exponential modal solutions, we solve the modal dispersion relation and obtain an explicit expression for the growth rate as a function of the six independent parameters of the problem. A non-zero τα gives rise to new physical scales, and dynamo action is completely different from the white-noise case; e.g. even weak α fluctuations can give rise to a dynamo. We argue that, at any wavenumber, both Moffatt drift and Shear always contribute to increasing the growth rate. Two examples are presented: (a) a Moffatt drift dynamo in the absence of shear and (b) a Shear dynamo in the absence of Moffatt drift.
International Nuclear Information System (INIS)
Sotnikov, V.I.; Paraschiv, I.; Makhin, V.; Bauer, B.S.; Leboeuf, J.N.; Dawson, J.M.
2002-01-01
A systematic study of the linear stage of sheared flow stabilization of Z-pinch plasmas based on the Hall fluid model with equilibrium that contains sheared flow and an axial magnetic field is presented. In the study we begin with the derivation of a general set of equations that permits the evaluation of the combined effect of sheared flow and axial magnetic field on the development of the azimuthal mode number m=0 sausage and m=1 kink magnetohydrodynamic (MHD) instabilities, with the Hall term included in the model. The incorporation of sheared flow, axial magnetic field, and the Hall term allows the Z-pinch system to be taken away from the region in parameter space where ideal MHD is applicable to a regime where nonideal effects tend to govern stability. The problem is then treated numerically by following the linear development in time of an initial perturbation. The numerical results for linear growth rates as a function of axial sheared flow, an axial magnetic field, and the Hall term are reported
Experimental investigation of single small bubble motion in linear shear flow in water
International Nuclear Information System (INIS)
Li, Zhongchun; Zhao, Yang; Song, Xiaoming; Yu, Hongxing; Jiang, Shengyao; Ishii, Mamoru
2016-01-01
Highlights: • The bubble motion in simple linear shear flow was experimentally investigated. • The bubble trajectories, bubble velocity and drag and lift force were obtained using image process routine. • The bubble trajectory was coupled with a zigzag motion and incline path. • The lift force was kept negative and it decreased when bubble diameter and shear flow magnitude increased. - Abstract: The motion of small bubble in a simple shear flow in water was experimental studied. Stable shear flow with low turbulence level was achieved with curved screen and measured using LDV. The bubbles were captured by high speed camera and the captured images were processed with digital image routine. The bubble was released from a capillary tube. The instantaneous bubble position, bubble velocity and forces were obtained based on the captured parameters. The quasi-steady lift coefficient was determined by the linear fitting of the bubble trajectory of several cycles. The results indicated that the lateral migration was coupled with the zigzag motion of bubble in the present experiment. The bubble migrated to the left side and its quasi-steady lift coefficient was negative. Good repeatable results were observed by measurements of 18 bubbles. The bubble motion in shear flow in water was first experimental studied and negative lift force was observed in the present study condition. The lift coefficient decreased when shear stress magnitude or bubble diameter increased in the present experiment condition.
Photocleavage of DNA: irradiation of quinone-containing reagents converts supercoiled to linear DNA
International Nuclear Information System (INIS)
Kock, T.; Schuster, G.B.; Ropp, J.D.; Sligar, S.G.
1993-01-01
Irradiation (350 nm) of air-saturated solutions of reagents containing an anthraquinone group linked to quaternary alkyl ammonium groups converts supercoiled DNA to circular and to linear DNA. Generation of linear DNA does not occur by accumulation of numerous single-strand cuts but by coincident-site double-strand cleavage of DNA. Irradiation forms the triplet state of the anthraquinone, which reacts either by hydrogen atom abstraction from a sugar of DNA or by electron transfer from a base of the DNA. Subsequent reactions result in chain scission. The quinone is apparently reformed after this sequence and reirradiation leads to double-strand cleavage. (Author)
Hydrodynamic of a deformed bubble in linear shear flow
International Nuclear Information System (INIS)
Adoua, S.R.
2007-07-01
This work is devoted to the study of an oblate spheroidal bubble of prescribed shape set fixed in a linear shear flow using direct numerical simulation. The three dimensional Navier-Stokes equations are solved in orthogonal curvilinear coordinates using a finite volume method. The bubble response is studied over a wide range of the aspect ratio (1-2.7), the bubble Reynolds number (50-2000) and the non-dimensional shear rate (0.-1.2). The numerical simulations shows that the shear flow imposes a plane symmetry of the wake whatever the parameters of the flow. The trailing vorticity is organized into two anti-symmetrical counter rotating tubes with a sign imposed by the competition of two mechanisms (the Lighthill mechanism and the instability of the wake). Whatever the Reynolds number, the lift coefficient reaches the analytical value obtained in an inviscid, weakly sheared flow corresponding to a lift force oriented in the same direction as that of a spherical bubble. For moderate Reynolds numbers, the direction of the lift force reverses when the bubble aspect ratio is large enough as observed in experiments. This reversal occurs for aspect ratios larger than 2.225 and is found to be directly linked to the sign of the trailing vorticity which is concentrated within two counter-rotating threads which propel the bubble in a direction depending of their sign of rotation. The behavior of the drag does not revel any significant effect induced by the wake structure and follows a quadratic increase with the shear rate. Finally, the torque experienced by the bubble also reverses for the same conditions inducing the reversal of the lift force. By varying the orientation of the bubble in the shear flow, a stable equilibrium position is found corresponding to a weak angle between the small axis of the bubble and the flow direction. (author)
Hydrodynamic characterization and molecular weight estimation of ultrasonically sheared DNA
International Nuclear Information System (INIS)
Casal, J. I.; Garces, F.; Garcia-Sacristan, A.
1981-01-01
The sedimentation coefficients and intrinsic viscosities of ultrasonically sheared calf thymus DNA have been determined. The molecular weight estimation according to this parameters have been compared with the ones obtained from the electrophoretic migration rates based on the calibration proposed using the known molecular weight restriction fragments of X-ENA. (Author) 35 refs
International Nuclear Information System (INIS)
Hau, Jan-Niklas; Oberlack, Martin; Chagelishvili, George; Khujadze, George; Tevzadze, Alexander
2015-01-01
Aerodynamic sound generation in shear flows is investigated in the light of the breakthrough in hydrodynamics stability theory in the 1990s, where generic phenomena of non-normal shear flow systems were understood. By applying the thereby emerged short-time/non-modal approach, the sole linear mechanism of wave generation by vortices in shear flows was captured [G. D. Chagelishvili, A. Tevzadze, G. Bodo, and S. S. Moiseev, “Linear mechanism of wave emergence from vortices in smooth shear flows,” Phys. Rev. Lett. 79, 3178-3181 (1997); B. F. Farrell and P. J. Ioannou, “Transient and asymptotic growth of two-dimensional perturbations in viscous compressible shear flow,” Phys. Fluids 12, 3021-3028 (2000); N. A. Bakas, “Mechanism underlying transient growth of planar perturbations in unbounded compressible shear flow,” J. Fluid Mech. 639, 479-507 (2009); and G. Favraud and V. Pagneux, “Superadiabatic evolution of acoustic and vorticity perturbations in Couette flow,” Phys. Rev. E 89, 033012 (2014)]. Its source is the non-normality induced linear mode-coupling, which becomes efficient at moderate Mach numbers that is defined for each perturbation harmonic as the ratio of the shear rate to its characteristic frequency. Based on the results by the non-modal approach, we investigate a two-dimensional homentropic constant shear flow and focus on the dynamical characteristics in the wavenumber plane. This allows to separate from each other the participants of the dynamical processes — vortex and wave modes — and to estimate the efficacy of the process of linear wave-generation. This process is analyzed and visualized on the example of a packet of vortex modes, localized in both, spectral and physical, planes. Further, by employing direct numerical simulations, the wave generation by chaotically distributed vortex modes is analyzed and the involved linear and nonlinear processes are identified. The generated acoustic field is anisotropic in the wavenumber
PCR-based detection of a rare linear DNA in cell culture
Directory of Open Access Journals (Sweden)
Saveliev Sergei V.
2002-01-01
Full Text Available The described method allows for detection of rare linear DNA fragments generated during genomic deletions. The predicted limit of the detection is one DNA molecule per 107 or more cells. The method is based on anchor PCR and involves gel separation of the linear DNA fragment and chromosomal DNA before amplification. The detailed chemical structure of the ends of the linear DNA can be defined with the use of additional PCR-based protocols. The method was applied to study the short-lived linear DNA generated during programmed genomic deletions in a ciliate. It can be useful in studies of spontaneous DNA deletions in cell culture or for tracking intracellular modifications at the ends of transfected DNA during gene therapy trials.
PCR-based detection of a rare linear DNA in cell culture.
Saveliev, Sergei V.
2002-11-11
The described method allows for detection of rare linear DNA fragments generated during genomic deletions. The predicted limit of the detection is one DNA molecule per 10(7) or more cells. The method is based on anchor PCR and involves gel separation of the linear DNA fragment and chromosomal DNA before amplification. The detailed chemical structure of the ends of the linear DNA can be defined with the use of additional PCR-based protocols. The method was applied to study the short-lived linear DNA generated during programmed genomic deletions in a ciliate. It can be useful in studies of spontaneous DNA deletions in cell culture or for tracking intracellular modifications at the ends of transfected DNA during gene therapy trials.
Lundahl, P. Johan; Kitts, Catherine C.; Nordé n, Bengt
2011-01-01
This article presents a new design of flow-orientation device for the study of bio-macromolecules, including DNA and protein complexes, as well as aggregates such as amyloid fibrils and liposome membranes, using Linear Dichroism (LD) spectroscopy. The design provides a number of technical advantages that should make the device inexpensive to manufacture, easier to use and more reliable than existing techniques. The degree of orientation achieved is of the same order of magnitude as that of the commonly used concentric cylinders Couette flow cell, however, since the device exploits a set of flat strain-free quartz plates, a number of problems associated with refraction and birefringence of light are eliminated, increasing the sensitivity and accuracy of measurement. The device provides similar shear rates to those of the Couette cell but is superior in that the shear rate is constant across the gap. Other major advantages of the design is the possibility to change parts and vary sample volume and path length easily and at a low cost. © 2011 The Royal Society of Chemistry.
Sheared-flow induced confinement transition in a linear magnetized plasma
Zhou, S.; Heidbrink, W. W.; Boehmer, H.; McWilliams, R.; Carter, T. A.; Vincena, S.; Friedman, B.; Schaffner, D.
2012-01-01
A magnetized plasma cylinder (12 cm in diameter) is induced by an annular shape obstacle at the Large Plasma Device [W. Gekelman, H. Pfister, Z. Lucky, J. Bamber, D. Leneman, and J. Maggs, Rev. Sci. Instrum. 62, 2875 (1991)]. Sheared azimuthal flow is driven at the edge of the plasma cylinder through edge biasing. Strong fluctuations of density and potential (δn /n~eδφ/kTe~0.5) are observed at the plasma edge, accompanied by a large density gradient (Ln=|∇lnn |-1~2cm) and shearing rate (γ ~300kHz). Edge turbulence and cross-field transport are modified by changing the bias voltage (Vbias) on the obstacle and the axial magnetic field (Bz) strength. In cases with low Vbias and large Bz, improved plasma confinement is observed, along with steeper edge density gradients. The radially sheared flow induced by E ×B drift dramatically changes the cross-phase between density and potential fluctuations, which causes the wave-induced particle flux to reverse its direction across the shear layer. In cases with higher bias voltage or smaller Bz, large radial transport and rapid depletion of the central plasma density are observed. Two-dimensional cross-correlation measurement shows that a mode with azimuthal mode number m =1 and large radial correlation length dominates the outward transport in these cases. Linear analysis based on a two-fluid Braginskii model suggests that the fluctuations are driven by both density gradient (drift wave like) and flow shear (Kelvin-Helmholtz like) at the plasma edge.
Sheared-flow induced confinement transition in a linear magnetized plasma
International Nuclear Information System (INIS)
Zhou, S.; Heidbrink, W. W.; Boehmer, H.; McWilliams, R.; Carter, T. A.; Vincena, S.; Friedman, B.; Schaffner, D.
2012-01-01
A magnetized plasma cylinder (12 cm in diameter) is induced by an annular shape obstacle at the Large Plasma Device [W. Gekelman, H. Pfister, Z. Lucky, J. Bamber, D. Leneman, and J. Maggs, Rev. Sci. Instrum. 62, 2875 (1991)]. Sheared azimuthal flow is driven at the edge of the plasma cylinder through edge biasing. Strong fluctuations of density and potential (δn/n∼eδφ/kT e ∼0.5) are observed at the plasma edge, accompanied by a large density gradient (L n =∇lnn -1 ∼2cm) and shearing rate (γ∼300kHz). Edge turbulence and cross-field transport are modified by changing the bias voltage (V bias ) on the obstacle and the axial magnetic field (B z ) strength. In cases with low V bias and large B z , improved plasma confinement is observed, along with steeper edge density gradients. The radially sheared flow induced by ExB drift dramatically changes the cross-phase between density and potential fluctuations, which causes the wave-induced particle flux to reverse its direction across the shear layer. In cases with higher bias voltage or smaller B z , large radial transport and rapid depletion of the central plasma density are observed. Two-dimensional cross-correlation measurement shows that a mode with azimuthal mode number m=1 and large radial correlation length dominates the outward transport in these cases. Linear analysis based on a two-fluid Braginskii model suggests that the fluctuations are driven by both density gradient (drift wave like) and flow shear (Kelvin-Helmholtz like) at the plasma edge.
Effect of Cisplatin on the Flexibility of Linear DNA
International Nuclear Information System (INIS)
Ji Chao; Zhang Ling-Yun; Hou Xi-Miao; Dou Shuo-Xing; Wang Peng-Ye
2011-01-01
With the aid of an atomic force microscope (AFM), we study the interaction between linear DNA fragment and cisplatin. For different cisplatin concentrations, the AFM used to observe the conformation of DNA has a gradual change. The contour length, the end-to-end distance and the local bend angles of the linear DNA fragment can be accurately measured. The persistence length of DNA interacting with cisplatin is decreased with the increasing cisplatin concentration. Furthermore, it is demonstrated that the local bend angles of DNA chains are increased by the binding interaction of cisplatin. (cross-disciplinary physics and related areas of science and technology)
On the linear stability of sheared and magnetized jets without current sheets - relativistic case
Kim, Jinho; Balsara, Dinshaw S.; Lyutikov, Maxim; Komissarov, Serguei S.
2018-03-01
In our prior series of papers, we studied the non-relativistic and relativistic linear stability analysis of magnetized jets that do not have current sheets. In this paper, we extend our analysis to relativistic jets with a velocity shear and a similar current sheet free structure. The jets that we study are realistic because we include a velocity shear, a current sheet free magnetic structure, a relativistic velocity and a realistic thermal pressure so as to achieve overall pressure balance in the unperturbed jet. In order to parametrize the velocity shear, we apply a parabolic profile to the jets' 4-velocity. We find that the velocity shear significantly improves the stability of relativistic magnetized jets. This fact is completely consistent with our prior stability analysis of non-relativistic, sheared jets. The velocity shear mainly plays a role in stabilizing the short wavelength unstable modes for the pinch as well as the kink instability modes. In addition, it also stabilizes the long wavelength fundamental pinch instability mode. We also visualize the pressure fluctuations of each unstable mode to provide a better physical understanding of the enhanced stabilization by the velocity shear. Our overall conclusion is that combining velocity shear with a strong and realistic magnetic field makes relativistic jets even more stable.
Exponential Shear Flow of Linear, Entangled Polymeric Liquids
DEFF Research Database (Denmark)
Neergaard, Jesper; Park, Kyungho; Venerus, David C.
2000-01-01
A previously proposed reptation model is used to interpret exponential shear flow data taken on an entangled polystyrenesolution. Both shear and normal stress measurements are made during exponential shear using mechanical means. The model iscapable of explaining all trends seen in the data......, and suggests a novel analysis of the data. This analysis demonstrates thatexponential shearing flow is no more capable of stretching polymer chains than is inception of steady shear at comparableinstantaneous shear rates. In fact, all exponential shear flow stresses measured are bounded quantitatively...
Rheokinetics and effect of shear rate on the kinetics of linear polyurethane formation
Navarchian, AH; Picchioni, F; Janssen, LPBM
In this article, the rheokinetics of polyurethane formation and the influence of shear rate on its kinetics have been studied. Two different linear polyurethane systems with 0% and 100% hard segments are examined in a cone and plate rheometer. The isothermal increase of viscosity during polyurethane
DEFF Research Database (Denmark)
Shabbir, Aamir; Huang, Qian; P. Baeza, Guilhem
2017-01-01
We present unique nonlinear shear and extensional rheology data of unentan-gled amorphous polyester ionomers based on polyethers and sulphonated phthalates with sodium/ lithium counterions. Previous linear viscoelastic (LVE) measurements1 showed signiﬁcant elasticity in these ionomers due...
International Nuclear Information System (INIS)
Gaur, Gurudatt; Das, Amita
2012-01-01
The study of electron velocity shear driven instability in electron magnetohydrodynamics (EMHD) regime in three dimensions has been carried out. It is well known that the instability is non-local in the plane defined by the flow direction and that of the shear, which is the usual Kelvin-Helmholtz mode, often termed as the sausage mode in the context of EMHD. On the other hand, a local instability with perturbations in the plane defined by the shear and the magnetic field direction exists which is termed as kink mode. The interplay of these two modes for simple sheared flow case as well as that when an external magnetic field exists has been studied extensively in the present manuscript in both linear and nonlinear regimes. Finally, these instability processes have been investigated for the exact 2D dipole solutions of EMHD equations [M. B. Isichenko and A. N. Marnachev, Sov. Phys. JETP 66, 702 (1987)] for which the electron flow velocity is sheared. It has been shown that dipoles are very robust and stable against the sausage mode as the unstable wavelengths are typically longer than the dipole size. However, we observe that they do get destabilized by the local kink mode.
Ateş, Filiz; Hug, François; Bouillard, Killian; Jubeau, Marc; Frappart, Thomas; Couade, Mathieu; Bercoff, Jeremy; Nordez, Antoine
2015-08-01
Muscle shear elastic modulus is linearly related to muscle torque during low-level contractions (torque over the entire range of isometric contraction and (ii) the influence of the size of the region of interest (ROI) used to average the shear modulus value. Ten healthy males performed two incremental isometric little finger abductions. The joint torque produced by Abductor Digiti Minimi was considered as an index of muscle torque and elastic modulus. A high coefficient of determination (R(2)) (range: 0.86-0.98) indicated that the relationship between elastic modulus and torque can be accurately modeled by a linear regression over the entire range (0% to 100% of MVC). The changes in shear elastic modulus as a function of torque were highly repeatable. Lower R(2) values (0.89±0.13 for 1/16 of ROI) and significantly increased absolute errors were observed when the shear elastic modulus was averaged over smaller ROI, half, 1/4 and 1/16 of the full ROI) than the full ROI (mean size: 1.18±0.24cm(2)). It suggests that the ROI should be as large as possible for accurate measurement of muscle shear modulus. Copyright © 2015 Elsevier Ltd. All rights reserved.
Stieger, M.A.; Richtering, W.
2003-01-01
The influence of shear flow on the phase separation of aqueous poly(N-isopropylacrylamide) (PNiPAM) microgel suspensions was investigated by means of rheo-turbidity and rheo-small angle neutron scattering (rheo-SANS) and compared to the behavior of linear PNiPAM macromolecules. The rheological
International Nuclear Information System (INIS)
Paraschiv, I.; Bauer, B. S.; Lindemuth, I. R.; Makhin, V.
2010-01-01
The effect of sheared axial flow on the Z-pinch sausage instability has been examined with two-dimensional magnetohydrodynamic simulations. Diffuse Bennett equilibria in the presence of axial flows with parabolic and linear radial profiles have been considered, and a detailed study of the linear and nonlinear development of small perturbations from these equilibria has been performed. The consequences of both single-wavelength and random-seed perturbations were calculated. It was found that sheared flows changed the internal m=0 mode development by reducing the linear growth rates, decreasing the saturation amplitude, and modifying the instability spectrum. High spatial frequency modes were stabilized to small amplitudes and only long wavelengths continued to grow. Full stability was obtained for supersonic plasma flows.
Schoppee Bortz, Pamela D.; Wamhoff, Brian R.
2011-01-01
The “quantitative” ChIP, a tool commonly used to study protein-DNA interactions in cells and tissue, is a difficult assay often plagued with technical error. We present, herein, the process required to merge multiple protocols into a quick, reliable and easy method and an approach to accurately quantify ChIP DNA prior to performing PCR. We demonstrate that high intensity sonication for at least 30 min is required for full cellular disruption and maximum DNA recovery because ChIP lysis buffers fail to lyse formaldehyde-fixed cells. In addition, extracting ChIP DNA with chelex-100 yields samples that are too dilute for evaluation of shearing efficiency or quantification via nanospectrophotometry. However, DNA extracted from the Mock-ChIP supernatant via the phenol-chloroform-isoamyl alcohol (PCIA) method can be used to evaluate DNA shearing efficiency and used as the standard in a fluorescence-based microplate assay. This enabled accurate quantification of DNA in chelex-extracted ChIP samples and normalization to total DNA concentration prior to performing real-time PCR (rtPCR). Thus, a quick ChIP assay that can be completed in nine bench hours over two days has been validated along with a rapid, accurate and repeatable way to quantify ChIP DNA. The resulting rtPCR data more accurately depicts treatment effects on protein-DNA interactions of interest. PMID:22046253
International Nuclear Information System (INIS)
Purtov, K V; Burakova, L P; Puzyr, A P; Bondar, V S
2008-01-01
Nanodiamonds synthesized by detonation have been found not to immobilize the ring form of pUC19 plasmid DNA. Linear pUC19 molecules with blunt ends, prepared by restriction of the initial ring form of pUC19 DNA, and linear 0.25-10 kb DNA fragments are adsorbed on nanodiamonds. The amount of adsorbed linear DNA molecules depends on the size of the molecules and the size of the nanodiamond clusters
Energy Technology Data Exchange (ETDEWEB)
Casal, J I; Garces, F; Garcia-Sacristan, A
1981-07-01
The sedimentation coefficients and intrinsic viscosities of ultrasonically sheared calf thymus DNA have been determined. The molecular weight estimation according to this parameters have been compared with the ones obtained from the electrophoretic migration rates based on the calibration proposed using the known molecular weight restriction fragments of X-ENA. (Author) 35 refs.
Single-tube linear DNA amplification (LinDA) for robust ChIP-seq
Shankaranarayanan, P.; Mendoza-Parra, M.A.; Walia, M.; Wang, L.; Li, N.; Trindade, L.M.; Gronemeyer, H.
2011-01-01
Genome-wide profiling of transcription factors based on massive parallel sequencing of immunoprecipitated chromatin (ChIP-seq) requires nanogram amounts of DNA. Here we describe a high-fidelity, single-tube linear DNA amplification method (LinDA) for ChIP-seq and reChIP-seq with picogram DNA amounts
Cheng, Xin; Ivessa, Andreas S
2012-10-01
Translocation of mitochondrial DNA (mtDNA) fragments to the nucleus and insertion of those fragments into nuclear DNA has been observed in several organisms ranging from yeast to plants and mammals. Disruption of specific nuclear genes by de novo insertions of mtDNA fragments has even been linked to the initiation of several human diseases. Recently, we demonstrated that baker's yeast strains with high rates of mtDNA fragments migrating to the nucleus (yme1-1 mutant) exhibit short chronological life spans (CLS). The yeast CLS is determined by the survival of non-dividing cell populations. Here, we show that lack of the non-homologous-end-joining enzyme DNA ligase IV (DNL4) can rescue the short CLS of the yme1-1 mutant. In fission yeast, DNA ligase IV has been shown to be required for the capture of mtDNA fragments during the repair of double-stranded DNA breaks in nuclear DNA. In further analyses using pulse field gel and 2D gel electrophoresis we demonstrate that linear mtDNA fragments with likely nuclear localization accumulate in the yme1-1 mutant. The accumulation of the linear mtDNA fragments in the yme1-1 mutant is suppressed when Dnl4 is absent. We propose that the linear nuclear mtDNA fragments accelerate the aging process in the yme1-1 mutant cells by possibly affecting nuclear processes including DNA replication, recombination, and repair as well as transcription of nuclear genes. We speculate further that Dnl4 protein has besides its function as a ligase also a role in DNA protection. Dnl4 protein may stabilize the linear mtDNA fragments in the nucleus by binding to their physical ends. In the absence of Dnl4 protein the linear fragments are therefore unprotected and possibly degraded by nuclear nucleases. Copyright © 2012 Elsevier GmbH. All rights reserved.
Numerical linear analysis of the effects of diamagnetic and shear flow on ballooning modes
Yanqing, HUANG; Tianyang, XIA; Bin, GUI
2018-04-01
The linear analysis of the influence of diamagnetic effect and toroidal rotation at the edge of tokamak plasmas with BOUT++ is discussed in this paper. This analysis is done by solving the dispersion relation, which is calculated through the numerical integration of the terms with different physics. This method is able to reveal the contributions of the different terms to the total growth rate. The diamagnetic effect stabilizes the ideal ballooning modes through inhibiting the contribution of curvature. The toroidal rotation effect is also able to suppress the curvature-driving term, and the stronger shearing rate leads to a stronger stabilization effect. In addition, through linear analysis using the energy form, the curvature-driving term provides the free energy absorbed by the line-bending term, diamagnetic term and convective term.
On the linearity of the dose-effect relationship of DNA double strand breaks
International Nuclear Information System (INIS)
Chadwick, K.H.; Leenhouts, H.P.
1994-01-01
Most radiation biologists believe that DNA double-strand breaks are induced linearly with radiation dose for all types of radiation. Since 1985, with the advent of elution and gel electrophoresis techniques which permit the measurement of DNA double-strand breaks induced in mammalian cells at doses having radiobiological relevance, the true nature of the dose-effect relationship has been brought into some doubt. Many investigators measured curvilinear dose-effect relationships and a few found good correlations between the induction of the DNA double-strand breaks and cell survival. We approach the problem pragmatically by assuming that the induction of DNA double-strand breaks by 125 I Auger electron emitters incorporated into the DNA of the cells is a linear function of the number of 125 I decays, and by comparing the dose-effect relationship for sparsely ionizing radiation against this standard. The conclusion drawn that the curvilinear dose-effect relationships and the correlations with survival are real. (Author)
Shear Melting of a Colloidal Glass
Eisenmann, Christoph; Kim, Chanjoong; Mattsson, Johan; Weitz, David A.
2010-01-01
We use confocal microscopy to explore shear melting of colloidal glasses, which occurs at strains of ˜0.08, coinciding with a strongly non-Gaussian step size distribution. For larger strains, the particle mean square displacement increases linearly with strain and the step size distribution becomes Gaussian. The effective diffusion coefficient varies approximately linearly with shear rate, consistent with a modified Stokes-Einstein relationship in which thermal energy is replaced by shear energy and the length scale is set by the size of cooperatively moving regions consisting of ˜3 particles.
International Nuclear Information System (INIS)
Mamatsashvili, George; Dong, Siwei; Jiménez, Javier; Khujadze, George; Chagelishvili, George; Foysi, Holger
2016-01-01
We performed direct numerical simulations of homogeneous shear turbulence to study the mechanism of the self-sustenance of subcritical turbulence in spectrally stable (constant) shear flows. For this purpose, we analyzed the turbulence dynamics in Fourier/wavenumber/spectral space based on the simulation data for the domain aspect ratio 1 : 1 : 1. Specifically, we examined the interplay of linear transient growth of Fourier harmonics and nonlinear processes. The transient growth of harmonics is strongly anisotropic in spectral space. This, in turn, leads to anisotropy of nonlinear processes in spectral space and, as a result, the main nonlinear process appears to be not a direct/inverse, but rather a transverse/angular redistribution of harmonics in Fourier space referred to as the nonlinear transverse cascade. It is demonstrated that the turbulence is sustained by the interplay of the linear transient, or nonmodal growth and the transverse cascade. This course of events reliably exemplifies the wellknown bypass scenario of subcritical turbulence in spectrally stable shear flows. These processes mainly operate at large length scales, comparable to the box size. Consequently, the central, small wavenumber area of Fourier space (the size of which is determined below) is crucial in the self-sustenance and is labeled the vital area. Outside the vital area, the transient growth and the transverse cascade are of secondary importance - Fourier harmonics are transferred to dissipative scales by the nonlinear direct cascade. The number of harmonics actively participating in the self-sustaining process (i.e., the harmonics whose energies grow more than 10% of the maximum spectral energy at least once during evolution) is quite large - it is equal to 36 for the considered box aspect ratio - and obviously cannot be described by low-order models. (paper)
Acoustic waves in unbounded shear flows
International Nuclear Information System (INIS)
Chagelishvili, G.D.; Khujadze, G.R.; Lominadze, J.G.; Rogava, A.D.
1996-05-01
The linear evolution of acoustic waves in fluid flow with constant density and uniform shear of velocity is investigated. The process of the mean flow energy extraction by the three-dimensional acoustic waves which is due to the non-normality of linear dynamics in shear flows is analyzed. The thorough examination of the dynamics of different physical quantities, specifying the wave evolution, is outlined. The revealing of the behaviour becomes possible owing to the nonmodal approach that has been extensively used in the study of the perturbations evolution in shear flows since the beginning of the nineties. In addition, a detailed analyses of the physics of shear energy gain by vortex and acoustic perturbations is presented. (author). 28 refs, 7 figs
Directory of Open Access Journals (Sweden)
Jussi Ruponen
2015-04-01
Full Text Available The purpose of this work was to determine the optimal welding time for linear friction welding of birch (Betula pendula L. wood while keeping the other parameters constant and at similar levels compared to other species in a similar density range. Specimens with dimensions of 20 × 5 × 150 mm3 were welded together, and the influence of welding time (2.5, 3.0, 3.5, and 4.0 s on the mechanical properties of the specimens was determined. The studies included a tensile-shear strength test as well as visual estimation of wood failure percentage (WFP. Additionally, X-ray microtomographic imaging was used to investigate and characterise the bond line properties as a non-destructive testing method. The highest mean tensile-shear strength, 7.9 MPa, was reached with a welding time of 3.5 s. Generally, all four result groups showed high, yet decreasing proportional standard deviations as the welding time increased. X-ray microtomographic images and analysis express the heterogeneity of the weld line clearly as well. According to the averaged group-wise results, WFP and tensile-shear strength correlated positively with an R2 of 0.93. An extrapolation of WFP to 65% totals a tensile-shear strength of 10.6 MPa, corresponding to four common adhesive bonds determined for beech.
On the Dynamics of Two-Dimensional Capillary-Gravity Solitary Waves with a Linear Shear Current
Directory of Open Access Journals (Sweden)
Dali Guo
2014-01-01
Full Text Available The numerical study of the dynamics of two-dimensional capillary-gravity solitary waves on a linear shear current is presented in this paper. The numerical method is based on the time-dependent conformal mapping. The stability of different kinds of solitary waves is considered. Both depression wave and large amplitude elevation wave are found to be stable, while small amplitude elevation wave is unstable to the small perturbation, and it finally evolves to be a depression wave with tails, which is similar to the irrotational capillary-gravity waves.
Characterization of a linear epitope on Chlamydia trachomatis serovar L2 DnaK-like protein
DEFF Research Database (Denmark)
Ozkokmen, D; Birkelund, Svend; Christiansen, Gunna
1994-01-01
A cytoplasmic 75-kDa immunogen from Chlamydia trachomatis serovar L2 has previously been characterized as being similar to the Escherichia coli heat shock protein DnaK. We have localized a linear epitope for one monoclonal antibody specific for C. trachomatis DnaK. By use of a recombinant DNA...... technique, the epitope was limited to 14 amino acids. With synthetic peptides, the epitope was further limited to eight amino acids. Six of these amino acids are conserved in bovine HSP70, which has a known three-dimensional structure. The amino acid sequence homologous to the epitope is located in a linear...
Angela Mihai, L.
2013-03-01
Finite element simulations of different shear deformations in non-linear elasticity are presented. We pay particular attention to the Poynting effects in hyperelastic materials, complementing recent theoretical findings by showing these effects manifested by specific models. As the finite element method computes uniform deformations exactly, for simple shear deformation and pure shear stress, the Poynting effect is represented exactly, while for the generalised shear and simple torsion, where the deformation is non-uniform, the solution is approximated efficiently and guaranteed computational bounds on the magnitude of the Poynting effect are obtained. The numerical results further indicate that, for a given elastic material, the same sign effect occurs under different shearing mechanisms, showing the genericity of the Poynting effect under a variety of shearing loads. In order to derive numerical models that exhibit either the positive or the negative Poynting effect, the so-called generalised empirical inequalities, which are less restrictive than the usual empirical inequalities involving material parameters, are assumed. © 2012 Elsevier Ltd.
Localized modelling and feedback control of linear instabilities in 2-D wall bounded shear flows
Tol, Henry; Kotsonis, Marios; de Visser, Coen
2016-11-01
A new approach is presented for control of instabilities in 2-D wall bounded shear flows described by the linearized Navier-Stokes equations (LNSE). The control design accounts both for spatially localized actuators/sensors and the dominant perturbation dynamics in an optimal control framework. An inflow disturbance model is proposed for streamwise instabilities that drive laminar-turbulent transition. The perturbation modes that contribute to the transition process can be selected and are included in the control design. A reduced order model is derived from the LNSE that captures the input-output behavior and the dominant perturbation dynamics. This model is used to design an optimal controller for suppressing the instability growth. A 2-D channel flow and a 2-D boundary layer flow over a flat plate are considered as application cases. Disturbances are generated upstream of the control domain and the resulting flow perturbations are estimated/controlled using wall shear measurements and localized unsteady blowing and suction at the wall. It will be shown that the controller is able to cancel the perturbations and is robust to unmodelled disturbances.
DEFF Research Database (Denmark)
Nosek, J.; Novotna, M.; Hlavatovicova, Z.
2004-01-01
The complete sequence of the mitochondrial DNA of the opportunistic yeast pathogen Candida parapsilosis was determined. The mitochondrial genome is represented by linear DNA molecules terminating with tandem repeats of a 738-bp unit. The number of repeats varies, thus generating a population...
The implications of non-linearity for excitation transfer in DNA
International Nuclear Information System (INIS)
Baverstock, K.F.; Cundall, R.B.
1990-01-01
Non-linear effects which arise from the coupling of anharmonic interactions can completely change excitation transport through molecular chains. The consequences of this for an understanding of the effect of ionising radiation on DNA are discussed. We consider that these effects should be taken into account in the interpretation of experimental data. (author)
Angulo, Raul E.; Hilbert, Stefan
2015-03-01
We explore the cosmological constraints from cosmic shear using a new way of modelling the non-linear matter correlation functions. The new formalism extends the method of Angulo & White, which manipulates outputs of N-body simulations to represent the 3D non-linear mass distribution in different cosmological scenarios. We show that predictions from our approach for shear two-point correlations at 1-300 arcmin separations are accurate at the ˜10 per cent level, even for extreme changes in cosmology. For moderate changes, with target cosmologies similar to that preferred by analyses of recent Planck data, the accuracy is close to ˜5 per cent. We combine this approach with a Monte Carlo Markov chain sampler to explore constraints on a Λ cold dark matter model from the shear correlation functions measured in the Canada-France-Hawaii Telescope Lensing Survey (CFHTLenS). We obtain constraints on the parameter combination σ8(Ωm/0.27)0.6 = 0.801 ± 0.028. Combined with results from cosmic microwave background data, we obtain marginalized constraints on σ8 = 0.81 ± 0.01 and Ωm = 0.29 ± 0.01. These results are statistically compatible with previous analyses, which supports the validity of our approach. We discuss the advantages of our method and the potential it offers, including a path to model in detail (i) the effects of baryons, (ii) high-order shear correlation functions, and (iii) galaxy-galaxy lensing, among others, in future high-precision cosmological analyses.
Linear viscoelastic characterization from filament stretching rheometry
DEFF Research Database (Denmark)
Wingstrand, Sara Lindeblad; Alvarez, Nicolas J.; Hassager, Ole
to measure both linear and nonlinear dynamics on a single apparatus. With a software modification to the FSR motor control, we show that linear viscoelasticity can be measured via small amplitude squeeze flow (SASF). Squeeze flow is a combination of both shear and extensional flow applied by axially......Traditionally, linear viscoelasticity is measured using small amplitude oscillatory shear flow. Due to experimental difficulties, shear flows are predominately confined to the linear and mildly nonlinear regime. On the other hand, extensional flows have proven more practical in measuring...... viscoelasticity well into the nonlinear regime. Therefore at present, complete rheological characterization of a material requires two apparatuses: a shear and an extensional rheometer. This work is focused on developing a linear viscoelastic protocol for the filament stretching rheometer (FSR) in order...
Single-tube linear DNA amplification for genome-wide studies using a few thousand cells
Shankaranarayanan, P.; Mendoza-Parra, M.A.; Gool, van W.; Trindade, L.M.; Gronemeyer, H.
2012-01-01
Linear amplification of DNA (LinDA) by T7 polymerase is a versatile and robust method for generating sufficient amounts of DNA for genome-wide studies with minute amounts of cells. LinDA can be coupled to a great number of global profiling technologies. Indeed, chromatin immunoprecipitation coupled
Shear-transformation-zone theory of linear glassy dynamics.
Bouchbinder, Eran; Langer, J S
2011-06-01
We present a linearized shear-transformation-zone (STZ) theory of glassy dynamics in which the internal STZ transition rates are characterized by a broad distribution of activation barriers. For slowly aging or fully aged systems, the main features of the barrier-height distribution are determined by the effective temperature and other near-equilibrium properties of the configurational degrees of freedom. Our theory accounts for the wide range of relaxation rates observed in both metallic glasses and soft glassy materials such as colloidal suspensions. We find that the frequency-dependent loss modulus is not just a superposition of Maxwell modes. Rather, it exhibits an α peak that rises near the viscous relaxation rate and, for nearly jammed, glassy systems, extends to much higher frequencies in accord with experimental observations. We also use this theory to compute strain recovery following a period of large, persistent deformation and then abrupt unloading. We find that strain recovery is determined in part by the initial barrier-height distribution, but that true structural aging also occurs during this process and determines the system's response to subsequent perturbations. In particular, we find by comparison with experimental data that the initial deformation produces a highly disordered state with a large population of low activation barriers, and that this state relaxes quickly toward one in which the distribution is dominated by the high barriers predicted by the near-equilibrium analysis. The nonequilibrium dynamics of the barrier-height distribution is the most important of the issues raised and left unresolved in this paper.
International Nuclear Information System (INIS)
Punjabi, Alkesh; Ali, Halima; Farhat, Hamidullah
2009-01-01
Extra terms are added to the generating function of the simple map (Punjabi et al 1992 Phys. Rev. Lett. 69 3322) to adjust shear of magnetic field lines in divertor tokamaks. From this new generating function, a higher shear map is derived from a canonical transformation. A continuous analog of the higher shear map is also derived. The method of maps (Punjabi et al 1994 J. Plasma Phys. 52 91) is used to calculate the average shear, stochastic broadening of the ideal separatrix near the X-point in the principal plane of the tokamak, loss of poloidal magnetic flux from inside the ideal separatrix, magnetic footprint on the collector plate, and its area, and the radial diffusion coefficient of magnetic field lines near the X-point. It is found that the width of the stochastic layer near the X-point and the loss of poloidal flux from inside the ideal separatrix scale linearly with average shear. The area of magnetic footprints scales roughly linearly with average shear. Linear scaling of the area is quite good when the average shear is greater than or equal to 1.25. When the average shear is in the range 1.1-1.25, the area of the footprint fluctuates (as a function of average shear) and scales faster than linear scaling. Radial diffusion of field lines near the X-point increases very rapidly by about four orders of magnitude as average shear increases from about 1.15 to 1.5. For higher values of average shear, diffusion increases linearly, and comparatively very slowly. The very slow scaling of the radial diffusion of the field can flatten the plasma pressure gradient near the separatrix, and lead to the elimination of type-I edge localized modes.
On the self-organizing process of large scale shear flows
Energy Technology Data Exchange (ETDEWEB)
Newton, Andrew P. L. [Department of Applied Maths, University of Sheffield, Sheffield, Yorkshire S3 7RH (United Kingdom); Kim, Eun-jin [School of Mathematics and Statistics, University of Sheffield, Sheffield, Yorkshire S3 7RH (United Kingdom); Liu, Han-Li [High Altitude Observatory, National Centre for Atmospheric Research, P. O. BOX 3000, Boulder, Colorado 80303-3000 (United States)
2013-09-15
Self organization is invoked as a paradigm to explore the processes governing the evolution of shear flows. By examining the probability density function (PDF) of the local flow gradient (shear), we show that shear flows reach a quasi-equilibrium state as its growth of shear is balanced by shear relaxation. Specifically, the PDFs of the local shear are calculated numerically and analytically in reduced 1D and 0D models, where the PDFs are shown to converge to a bimodal distribution in the case of finite correlated temporal forcing. This bimodal PDF is then shown to be reproduced in nonlinear simulation of 2D hydrodynamic turbulence. Furthermore, the bimodal PDF is demonstrated to result from a self-organizing shear flow with linear profile. Similar bimodal structure and linear profile of the shear flow are observed in gulf stream, suggesting self-organization.
Angela Mihai, L.; Goriely, Alain
2013-01-01
Finite element simulations of different shear deformations in non-linear elasticity are presented. We pay particular attention to the Poynting effects in hyperelastic materials, complementing recent theoretical findings by showing these effects
Experimental study of shear rate dependence in perpetually sheared granular matter
Liu, Sophie Yang; Guillard, François; Marks, Benjy; Rognon, Pierre; Einav, Itai
2017-06-01
We study the shear behaviour of various granular materials by conducting novel perpetual simple shear experiments over four orders of magnitude of relatively low shear rates. The newly developed experimental apparatus employed is called "3D Stadium Shear Device" which is an extended version of the 2D Stadium Shear Device [1]. This device is able to provide a non-radial dependent perpetual shear flow and a nearly linear velocity profile between two oppositely moving shear walls. Using this device, we are able to test a large variety of granular materials. Here, we demonstrate the applicability of the device on glass beads (diameter 1 mm, 3 mm, and 14 mm) and rice. We particularly focus on studying these materials at very low inertial number I ranging from 10-6 to 10-2. We find that, within this range of I, the friction coefficient μ of glass beads has no shear rate dependence. A particularly appealing observation comes from testing rice, where the attainment of critical state develops under much longer duration than in other materials. Initially during shear we find a value of μ similar to that found for glass beads, but with time this value decreases gradually towards the asymptotic critical state value. The reason, we believe, lies in the fact that rice grains are strongly elongated; hence the time to achieve the stable μ is primarily controlled by the time for particles to align themselves with respect to the shear walls. Furthermore, the initial packing conditions of samples also plays a role in the evolution of μ when the shear strain is small, but that impact will eventually be erased after sufficient shear strain.
Magnetorheological dampers in shear mode
International Nuclear Information System (INIS)
Wereley, N M; Cho, J U; Choi, Y T; Choi, S B
2008-01-01
In this study, three types of shear mode damper using magnetorheological (MR) fluids are theoretically analyzed: linear, rotary drum, and rotary disk dampers. The damping performance of these shear mode MR dampers is characterized in terms of the damping coefficient, which is the ratio of the equivalent viscous damping at field-on status to the damping at field-off status. For these three types of shear mode MR damper, the damping coefficient or dynamic range is derived using three different constitutive models: the Bingham–plastic, biviscous, and Herschel–Bulkley models. The impact of constitutive behavior on shear mode MR dampers is theoretically presented and compared
Time-dependent behavior of rough discontinuities under shearing conditions
Wang, Zhen; Shen, Mingrong; Ding, Wenqi; Jang, Boan; Zhang, Qingzhao
2018-02-01
The mechanical properties of rocks are generally controlled by their discontinuities. In this study, the time-dependent behavior of rough artificial joints under shearing conditions was investigated. Based on Barton’s standard profile lines, samples with artificial joint surfaces were prepared and used to conduct the shear and creep tests. The test results showed that the shear strength of discontinuity was linearly related to roughness, and subsequently an empirical equation was established. The long-term strength of discontinuity can be identified using the inflection point of the isocreep-rate curve, and it was linearly related to roughness. Furthermore, the ratio of long-term and instantaneous strength decreased with the increase of roughness. The shear-stiffness coefficient increased with the increase of shear rate, and the influence of shear rate on the shear stiffness coefficient decreased with the decrease of roughness. Further study of the mechanism revealed that these results could be attributed to the different time-dependent behavior of intact and joint rocks.
Energy Technology Data Exchange (ETDEWEB)
Adoua, S.R
2007-07-15
This work is devoted to the study of an oblate spheroidal bubble of prescribed shape set fixed in a linear shear flow using direct numerical simulation. The three dimensional Navier-Stokes equations are solved in orthogonal curvilinear coordinates using a finite volume method. The bubble response is studied over a wide range of the aspect ratio (1-2.7), the bubble Reynolds number (50-2000) and the non-dimensional shear rate (0.-1.2). The numerical simulations shows that the shear flow imposes a plane symmetry of the wake whatever the parameters of the flow. The trailing vorticity is organized into two anti-symmetrical counter rotating tubes with a sign imposed by the competition of two mechanisms (the Lighthill mechanism and the instability of the wake). Whatever the Reynolds number, the lift coefficient reaches the analytical value obtained in an inviscid, weakly sheared flow corresponding to a lift force oriented in the same direction as that of a spherical bubble. For moderate Reynolds numbers, the direction of the lift force reverses when the bubble aspect ratio is large enough as observed in experiments. This reversal occurs for aspect ratios larger than 2.225 and is found to be directly linked to the sign of the trailing vorticity which is concentrated within two counter-rotating threads which propel the bubble in a direction depending of their sign of rotation. The behavior of the drag does not revel any significant effect induced by the wake structure and follows a quadratic increase with the shear rate. Finally, the torque experienced by the bubble also reverses for the same conditions inducing the reversal of the lift force. By varying the orientation of the bubble in the shear flow, a stable equilibrium position is found corresponding to a weak angle between the small axis of the bubble and the flow direction. (author)
Shear stresses around circular cylindrical openings
Hoogenboom, P.C.J.; Van Weelden, C.; Blom, C.M.B.
2010-01-01
In this paper stress concentrations are studied around circular cylindrical openings or voids in a linear elastic continuum. The loading is such that a uniform shear stress occurs in the continuum, which is disturbed by the opening. The shear stress is in the direction of the centre axis of the
Experimental study of shear rate dependence in perpetually sheared granular matter
Directory of Open Access Journals (Sweden)
Liu Sophie Yang
2017-01-01
Full Text Available We study the shear behaviour of various granular materials by conducting novel perpetual simple shear experiments over four orders of magnitude of relatively low shear rates. The newly developed experimental apparatus employed is called “3D Stadium Shear Device” which is an extended version of the 2D Stadium Shear Device [1]. This device is able to provide a non-radial dependent perpetual shear flow and a nearly linear velocity profile between two oppositely moving shear walls. Using this device, we are able to test a large variety of granular materials. Here, we demonstrate the applicability of the device on glass beads (diameter 1 mm, 3 mm, and 14 mm and rice. We particularly focus on studying these materials at very low inertial number I ranging from 10−6 to 10−2. We find that, within this range of I, the friction coefficient μ of glass beads has no shear rate dependence. A particularly appealing observation comes from testing rice, where the attainment of critical state develops under much longer duration than in other materials. Initially during shear we find a value of μ similar to that found for glass beads, but with time this value decreases gradually towards the asymptotic critical state value. The reason, we believe, lies in the fact that rice grains are strongly elongated; hence the time to achieve the stable μ is primarily controlled by the time for particles to align themselves with respect to the shear walls. Furthermore, the initial packing conditions of samples also plays a role in the evolution of μ when the shear strain is small, but that impact will eventually be erased after sufficient shear strain.
Jiang, Yi; Li, Guoyang; Qian, Lin-Xue; Liang, Si; Destrade, Michel; Cao, Yanping
2015-10-01
We use supersonic shear wave imaging (SSI) technique to measure not only the linear but also the nonlinear elastic properties of brain matter. Here, we tested six porcine brains ex vivo and measured the velocities of the plane shear waves induced by acoustic radiation force at different states of pre-deformation when the ultrasonic probe is pushed into the soft tissue. We relied on an inverse method based on the theory governing the propagation of small-amplitude acoustic waves in deformed solids to interpret the experimental data. We found that, depending on the subjects, the resulting initial shear modulus [Formula: see text] varies from 1.8 to 3.2 kPa, the stiffening parameter [Formula: see text] of the hyperelastic Demiray-Fung model from 0.13 to 0.73, and the third- [Formula: see text] and fourth-order [Formula: see text] constants of weakly nonlinear elasticity from [Formula: see text]1.3 to [Formula: see text]20.6 kPa and from 3.1 to 8.7 kPa, respectively. Paired [Formula: see text] test performed on the experimental results of the left and right lobes of the brain shows no significant difference. These values are in line with those reported in the literature on brain tissue, indicating that the SSI method, combined to the inverse analysis, is an efficient and powerful tool for the mechanical characterization of brain tissue, which is of great importance for computer simulation of traumatic brain injury and virtual neurosurgery.
Influence of equilibrium shear flow in the parallel magnetic direction on edge localized mode crash
Energy Technology Data Exchange (ETDEWEB)
Luo, Y.; Xiong, Y. Y. [College of Physical Science and Technology, Sichuan University, 610064 Chengdu (China); Chen, S. Y., E-mail: sychen531@163.com [College of Physical Science and Technology, Sichuan University, 610064 Chengdu (China); Key Laboratory of High Energy Density Physics and Technology of Ministry of Education, Sichuan University, Chengdu 610064 (China); Southwestern Institute of Physics, Chengdu 610041 (China); Huang, J.; Tang, C. J. [College of Physical Science and Technology, Sichuan University, 610064 Chengdu (China); Key Laboratory of High Energy Density Physics and Technology of Ministry of Education, Sichuan University, Chengdu 610064 (China)
2016-04-15
The influence of the parallel shear flow on the evolution of peeling-ballooning (P-B) modes is studied with the BOUT++ four-field code in this paper. The parallel shear flow has different effects in linear simulation and nonlinear simulation. In the linear simulations, the growth rate of edge localized mode (ELM) can be increased by Kelvin-Helmholtz term, which can be caused by the parallel shear flow. In the nonlinear simulations, the results accord with the linear simulations in the linear phase. However, the ELM size is reduced by the parallel shear flow in the beginning of the turbulence phase, which is recognized as the P-B filaments' structure. Then during the turbulence phase, the ELM size is decreased by the shear flow.
Wang, Fei; Chen, Quanjiao; Li, Shuntang; Zhang, Chenyao; Li, Shanshan; Liu, Min; Mei, Kun; Li, Chunhua; Ma, Lixin; Yu, Xiaolan
2017-06-01
Linear DNA vaccines provide effective vaccination. However, their application is limited by high cost and small scale of the conventional polymerase chain reaction (PCR) generally used to obtain sufficient amounts of DNA effective against epidemic diseases. In this study, a two-step, large-scale PCR was established using a low-cost DNA polymerase, RKOD, expressed in Pichia pastoris. Two linear DNA vaccines encoding influenza H1N1 hemagglutinin (HA) 1, LEC-HA, and PTO-LEC-HA (with phosphorothioate-modified primers), were produced by the two-step PCR. Protective effects of the vaccines were evaluated in a mouse model. BALB/c mice were immunized three times with the vaccines or a control DNA fragment. All immunized animals were challenged by intranasal administration of a lethal dose of influenza H1N1 virus 2 weeks after the last immunization. Sera of the immunized animals were tested for the presence of HA-specific antibodies, and the total IFN-γ responses induced by linear DNA vaccines were measured. The results showed that the DNA vaccines but not the control DNA induced strong antibody and IFN-γ responses. Additionally, the PTO-LEC-HA vaccine effectively protected the mice against the lethal homologous mouse-adapted virus, with a survival rate of 100% versus 70% in the LEC-HA-vaccinated group, showing that the PTO-LEC-HA vaccine was more effective than LEC-HA. In conclusion, the results indicated that the linear H1N1 HA-coding DNA vaccines induced significant immune responses and protected mice against a lethal virus challenge. Thus, the low-cost, two-step, large-scale PCR can be considered a potential tool for rapid manufacturing of linear DNA vaccines against emerging infectious diseases. Copyright © 2017 Elsevier B.V. All rights reserved.
Sheared Electroconvective Instability
Kwak, Rhokyun; Pham, Van Sang; Lim, Kiang Meng; Han, Jongyoon
2012-11-01
Recently, ion concentration polarization (ICP) and related phenomena draw attention from physicists, due to its importance in understanding electrochemical systems. Researchers have been actively studying, but the complexity of this multiscale, multiphysics phenomenon has been limitation for gaining a detailed picture. Here, we consider electroconvective(EC) instability initiated by ICP under pressure-driven flow, a scenario often found in electrochemical desalinations. Combining scaling analysis, experiment, and numerical modeling, we reveal unique behaviors of sheared EC: unidirectional vortex structures, its size selection and vortex propagation. Selected by balancing the external pressure gradient and the electric body force, which generates Hagen-Poiseuille(HP) flow and vortical EC, the dimensionless EC thickness scales as (φ2 /UHP)1/3. The pressure-driven flow(or shear) suppresses unfavorably-directed vortices, and simultaneously pushes favorably-directed vortices with constant speed, which is linearly proportional to the total shear of HP flow. This is the first systematic characterization of sheared EC, which has significant implications on the optimization of electrodialysis and other electrochemical systems.
Energy Technology Data Exchange (ETDEWEB)
Chattopadhyay, Saket; Ely, Abdullah; Bloom, Kristie; Weinberg, Marc S. [Antiviral Gene Therapy Research Unit, University of the Witwatersrand (South Africa); Arbuthnot, Patrick, E-mail: Patrick.Arbuthnot@wits.ac.za [Antiviral Gene Therapy Research Unit, University of the Witwatersrand (South Africa)
2009-11-20
RNA interference (RNAi) may be harnessed to inhibit viral gene expression and this approach is being developed to counter chronic infection with hepatitis B virus (HBV). Compared to synthetic RNAi activators, DNA expression cassettes that generate silencing sequences have advantages of sustained efficacy and ease of propagation in plasmid DNA (pDNA). However, the large size of pDNAs and inclusion of sequences conferring antibiotic resistance and immunostimulation limit delivery efficiency and safety. To develop use of alternative DNA templates that may be applied for therapeutic gene silencing, we assessed the usefulness of PCR-generated linear expression cassettes that produce anti-HBV micro-RNA (miR) shuttles. We found that silencing of HBV markers of replication was efficient (>75%) in cell culture and in vivo. miR shuttles were processed to form anti-HBV guide strands and there was no evidence of induction of the interferon response. Modification of terminal sequences to include flanking human adenoviral type-5 inverted terminal repeats was easily achieved and did not compromise silencing efficacy. These linear DNA sequences should have utility in the development of gene silencing applications where modifications of terminal elements with elimination of potentially harmful and non-essential sequences are required.
International Nuclear Information System (INIS)
Chattopadhyay, Saket; Ely, Abdullah; Bloom, Kristie; Weinberg, Marc S.; Arbuthnot, Patrick
2009-01-01
RNA interference (RNAi) may be harnessed to inhibit viral gene expression and this approach is being developed to counter chronic infection with hepatitis B virus (HBV). Compared to synthetic RNAi activators, DNA expression cassettes that generate silencing sequences have advantages of sustained efficacy and ease of propagation in plasmid DNA (pDNA). However, the large size of pDNAs and inclusion of sequences conferring antibiotic resistance and immunostimulation limit delivery efficiency and safety. To develop use of alternative DNA templates that may be applied for therapeutic gene silencing, we assessed the usefulness of PCR-generated linear expression cassettes that produce anti-HBV micro-RNA (miR) shuttles. We found that silencing of HBV markers of replication was efficient (>75%) in cell culture and in vivo. miR shuttles were processed to form anti-HBV guide strands and there was no evidence of induction of the interferon response. Modification of terminal sequences to include flanking human adenoviral type-5 inverted terminal repeats was easily achieved and did not compromise silencing efficacy. These linear DNA sequences should have utility in the development of gene silencing applications where modifications of terminal elements with elimination of potentially harmful and non-essential sequences are required.
Sub-wavelength plasmonic readout for direct linear analysis of optically tagged DNA
Varsanik, Jonathan; Teynor, William; LeBlanc, John; Clark, Heather; Krogmeier, Jeffrey; Yang, Tian; Crozier, Kenneth; Bernstein, Jonathan
2010-02-01
This work describes the development and fabrication of a novel nanofluidic flow-through sensing chip that utilizes a plasmonic resonator to excite fluorescent tags with sub-wavelength resolution. We cover the design of the microfluidic chip and simulation of the plasmonic resonator using Finite Difference Time Domain (FDTD) software. The fabrication methods are presented, with testing procedures and preliminary results. This research is aimed at improving the resolution limits of the Direct Linear Analysis (DLA) technique developed by US Genomics [1]. In DLA, intercalating dyes which tag a specific 8 base-pair sequence are inserted in a DNA sample. This sample is pumped though a nano-fluidic channel, where it is stretched into a linear geometry and interrogated with light which excites the fluorescent tags. The resulting sequence of optical pulses produces a characteristic "fingerprint" of the sample which uniquely identifies any sample of DNA. Plasmonic confinement of light to a 100 nm wide metallic nano-stripe enables resolution of a higher tag density compared to free space optics. Prototype devices have been fabricated and are being tested with fluorophore solutions and tagged DNA. Preliminary results show evanescent coupling to the plasmonic resonator is occurring with 0.1 micron resolution, however light scattering limits the S/N of the detector. Two methods to reduce scattered light are presented: index matching and curved waveguides.
High Efficiency Hydrodynamic DNA Fragmentation in a Bubbling System.
Li, Lanhui; Jin, Mingliang; Sun, Chenglong; Wang, Xiaoxue; Xie, Shuting; Zhou, Guofu; van den Berg, Albert; Eijkel, Jan C T; Shui, Lingling
2017-01-18
DNA fragmentation down to a precise fragment size is important for biomedical applications, disease determination, gene therapy and shotgun sequencing. In this work, a cheap, easy to operate and high efficiency DNA fragmentation method is demonstrated based on hydrodynamic shearing in a bubbling system. We expect that hydrodynamic forces generated during the bubbling process shear the DNA molecules, extending and breaking them at the points where shearing forces are larger than the strength of the phosphate backbone. Factors of applied pressure, bubbling time and temperature have been investigated. Genomic DNA could be fragmented down to controllable 1-10 Kbp fragment lengths with a yield of 75.30-91.60%. We demonstrate that the ends of the genomic DNAs generated from hydrodynamic shearing can be ligated by T4 ligase and the fragmented DNAs can be used as templates for polymerase chain reaction. Therefore, in the bubbling system, DNAs could be hydrodynamically sheared to achieve smaller pieces in dsDNAs available for further processes. It could potentially serve as a DNA sample pretreatment technique in the future.
Midbroken Reinforced Concrete Shear Frames Due to Earthquakes
DEFF Research Database (Denmark)
Köylüoglu, H. U.; Cakmak, A. S.; Nielsen, Søren R. K.
A non-linear hysteretic model for the response and local damage analyses of reinforced concrete shear frames subject to earthquake excitation is proposed, and, the model is applied to analyse midbroken reinforced concrete (RC) structures due to earthquake loads. Each storey of the shear frame...
Shear Alfven waves in tokamaks
International Nuclear Information System (INIS)
Kieras, C.E.
1982-12-01
Shear Alfven waves in an axisymmetric tokamak are examined within the framework of the linearized ideal MHD equations. Properties of the shear Alfven continuous spectrum are studied both analytically and numerically. Implications of these results in regards to low frequency rf heating of toroidally confined plasmas are discussed. The structure of the spatial singularities associated with these waves is determined. A reduced set of ideal MHD equations is derived to describe these waves in a very low beta plasma
Energy Technology Data Exchange (ETDEWEB)
Senatore, Giacomo [Department of Aerospace Engineering, Universita di Pisa, Pisa 56122 (Italy); Davis, Sean; Jacobs, Gustaaf, E-mail: gjacobs@mail.sdsu.edu [Department of Aerospace Engineering and Engineering Mechanics, San Diego State University, San Diego, 92182 California (United States)
2015-03-15
The effect of non-uniformity in bulk particle mass loading on the linear development of a particle-laden shear layer is analyzed by means of a stochastic Eulerian-Eulerian model. From the set of governing equations of the two-fluid model, a modified Rayleigh equation is derived that governs the linear growth of a spatially periodic disturbance. Eigenvalues for this Rayleigh equation are determined numerically using proper conditions at the co-flowing gas and particle interface locations. For the first time, it is shown that non-uniform loading of small-inertia particles (Stokes number (St) <0.2) may destabilize the inviscid mixing layer development as compared to the pure-gas flow. The destabilization is triggered by an energy transfer rate that globally flows from the particle phase to the gas phase. For intermediate St (1 < St < 10), a maximum stabilizing effect is computed, while at larger St, two unstable modes may coexist. The growth rate computations from linear stability analysis are verified numerically through simulations based on an Eulerian-Lagrangian (EL) model based on the inviscid Euler equations and a point particle model. The growth rates found in numerical experiments using the EL method are in very good agreement with growth rates from the linear stability analysis and validate the destabilizing effect induced by the presence of particles with low St.
Park, J. J.
2017-12-01
Sheared Layers in the Continental Crust: Nonlinear and Linearized inversion for Ps receiver functions Jeffrey Park, Yale University The interpretation of seismic receiver functions (RFs) in terms of isotropic and anisotropic layered structure can be complex. The relationship between structure and body-wave scattering is nonlinear. The anisotropy can involve more parameters than the observations can readily constrain. Finally, reflectivity-predicted layer reverberations are often not prominent in data, so that nonlinear waveform inversion can search in vain to match ghost signals. Multiple-taper correlation (MTC) receiver functions have uncertainties in the frequency domain that follow Gaussian statistics [Park and Levin, 2016a], so grid-searches for the best-fitting collections of interfaces can be performed rapidly to minimize weighted misfit variance. Tests for layer-reverberations can be performed in the frequency domain without reflectivity calculations, allowing flexible modelling of weak, but nonzero, reverberations. Park and Levin [2016b] linearized the hybridization of P and S body waves in an anisotropic layer to predict first-order Ps conversion amplitudes at crust and mantle interfaces. In an anisotropic layer, the P wave acquires small SV and SH components. To ensure continuity of displacement and traction at the top and bottom boundaries of the layer, shear waves are generated. Assuming hexagonal symmetry with an arbitrary symmetry axis, theory confirms the empirical stacking trick of phase-shifting transverse RFs by 90 degrees in back-azimuth [Shiomi and Park, 2008; Schulte-Pelkum and Mahan, 2014] to enhance 2-lobed and 4-lobed harmonic variation. Ps scattering is generated by sharp interfaces, so that RFs resemble the first derivative of the model. MTC RFs in the frequency domain can be manipulated to obtain a first-order reconstruction of the layered anisotropy, under the above modeling constraints and neglecting reverberations. Examples from long
Lin, Neil Y. C.
2013-12-01
Using high-speed confocal microscopy, we measure the particle positions in a colloidal suspension under large-amplitude oscillatory shear. Using the particle positions, we quantify the in situ anisotropy of the pair-correlation function, a measure of the Brownian stress. From these data we find two distinct types of responses as the system crosses over from equilibrium to far-from-equilibrium states. The first is a nonlinear amplitude saturation that arises from shear-induced advection, while the second is a linear frequency saturation due to competition between suspension relaxation and shear rate. In spite of their different underlying mechanisms, we show that all the data can be scaled onto a master curve that spans the equilibrium and far-from-equilibrium regimes, linking small-amplitude oscillatory to continuous shear. This observation illustrates a colloidal analog of the Cox-Merz rule and its microscopic underpinning. Brownian dynamics simulations show that interparticle interactions are sufficient for generating both experimentally observed saturations. © 2013 American Physical Society.
Lin, Neil Y. C.; Goyal, Sushmit; Cheng, Xiang; Zia, Roseanna N.; Escobedo, Fernando A.; Cohen, Itai
2013-01-01
Using high-speed confocal microscopy, we measure the particle positions in a colloidal suspension under large-amplitude oscillatory shear. Using the particle positions, we quantify the in situ anisotropy of the pair-correlation function, a measure of the Brownian stress. From these data we find two distinct types of responses as the system crosses over from equilibrium to far-from-equilibrium states. The first is a nonlinear amplitude saturation that arises from shear-induced advection, while the second is a linear frequency saturation due to competition between suspension relaxation and shear rate. In spite of their different underlying mechanisms, we show that all the data can be scaled onto a master curve that spans the equilibrium and far-from-equilibrium regimes, linking small-amplitude oscillatory to continuous shear. This observation illustrates a colloidal analog of the Cox-Merz rule and its microscopic underpinning. Brownian dynamics simulations show that interparticle interactions are sufficient for generating both experimentally observed saturations. © 2013 American Physical Society.
A New Accurate yet Simple Shear Flexible Triangular Plate Element with Linear Bending Strains
DEFF Research Database (Denmark)
Damkilde, Lars; Pedersen, Ronnie
2010-01-01
The paper describes a new shear flexible triangular element. The formulation is based on displacement interpolation of the transverse displacement of the midsurface and the rotations of the cross-sections, and the element is fully compatible. The basic principle is to use a so-called balanced...... interpolation so that the part of the shear strains that relates to the transverse displacement has the same polynomial variation as the part of the shear strains that relates to the rotations of the cross-section. This balanced interpolation in combination with complete polynomial interpolations prevents shear...... are virtually the same. The slightly incompatible formulation can be implemented directly into commercial codes....
Ordering fluctuations in a shear-banding wormlike micellar system
DEFF Research Database (Denmark)
Angelico, R.; Rossi, C. Oliviero; Ambrosone, L.
2010-01-01
We present a first investigation about the non-linear flow properties and transient orientational-order fluctuations observed in the shear-thinning lecithin–water–cyclohexane wormlike micellar system at a concentration near to the zero-shear isotropic–nematic phase transition. From rheological...
Vortex-induced vibrations of a square cylinder under linear shear flow
Energy Technology Data Exchange (ETDEWEB)
Sun, Wenjuan; Zhou, Dai; Han, Zhaolong [School of Naval Architecture, Ocean and Civil Engineering, Shanghai Jiao Tong University, Shanghai 200240 (China); Tu, Jiahuang, E-mail: tujiahuang1982@163.com, E-mail: han.arkey@gmail.com [College of Civil Engineering and Mechanics, Xiangtan University, Xiangtan, Hunan 411105 (China)
2017-04-15
This paper investigates the numerical vortex-induced vibration (VIV) of a square cylinder which is connected to a 2-DOF mass-spring system and is immersed in the planar shear flow by employing a characteristic-based split (CBS) finite element method (FEM). The reduced mass of the square cylinder is M {sub r} = 2, while the reduced velocity, U {sub r}, is changed from 3 to 12 with an increment of Δ U {sub r} = 1. The effects of some key parameters on the cylinder dynamic responses, vibrating frequencies, the flow patterns as well as the energy transferred between the fluid and cylinder are revealed. In this study, the key parameters are selected as follows: shear ratio ( k = 0, 0.05 and 0.1) and Reynolds numbers ( Re = 80 and 160). Numerical results demonstrate that the X – Y trajectories of the cylinder mainly appear as a symmetrical figure ‘8’ in uniform flow ( k = 0) and an unsymmetrical figure ‘8’ and ‘O’ in shear flows ( k = 0.05 and 0.1). The maximum oscillation amplitudes of the square cylinder in both the inline and transverse directions have distinct characteristics compared to that of a circular cylinder. Two kinds of flow patterns, ‘2S’ and ‘P + S’, are mainly observed under the shear flow. Also, the mean values of the energy of the cylinder system increase with the reduced velocity, while the root mean square (rms) of the energy reaches its peak value at reduced velocity U {sub r} = 5. (paper)
Instabilities and vortex dynamics in shear flow of magnetized plasmas
International Nuclear Information System (INIS)
Tajima, T.; Horton, W.; Morrison, P.J.; Schutkeker, J.; Kamimura, T.; Mima, K.; Abe, Y.
1990-03-01
Gradient-driven instabilities and the subsequent nonlinear evolution of generated vortices in sheared E x B flows are investigated for magnetized plasmas with and without gravity (magnetic curvature) and magnetic shear by using theory and implicit particle simulations. In the linear eigenmode analysis, the instabilities considered are the Kelvin-Helmholtz (K-H) instability and the resistive interchange instability. The presence of the shear flow can stabilize these instabilities. The dynamics of the K-H instability and the vortex dynamics can be uniformly described by the initial flow pattern with a vorticity localization parameter ε. The observed growth of the K-H modes is exponential in time for linearly unstable modes, secular for marginal mode, and absent until driven nonlinearly for linearly stable modes. The distance between two vortex centers experiences rapid merging while the angle θ between the axis of vortices and the external shear flow increases. These vortices proceed toward their overall coalescence, while shedding small-scale vortices and waves. The main features of vortex dynamics of the nonlinear coalescence and the tilt or the rotational instabilities of vortices are shown to be given by using a low dimension Hamiltonian representation for interacting vortex cores in the shear flow. 24 refs., 19 figs., 1 tab
Is DNA a worm-like chain in Couette flow? In search of persistence length, a critical review.
Rittman, Martyn; Gilroy, Emma; Koohya, Hashem; Rodger, Alison; Richards, Adair
2009-01-01
Persistence length is the foremost measure of DNA flexibility. Its origins lie in polymer theory which was adapted for DNA following the determination of BDNA structure in 1953. There is no single definition of persistence length used, and the links between published definitions are based on assumptions which may, or may not be, clearly stated. DNA flexibility is affected by local ionic strength, solvent environment, bound ligands and intrinsic sequence-dependent flexibility. This article is a review of persistence length providing a mathematical treatment of the relationships between four definitions of persistence length, including: correlation, Kuhn length, bending, and curvature. Persistence length has been measured using various microscopy, force extension and solution methods such as linear dichroism and transient electric birefringence. For each experimental method a model of DNA is required to interpret the data. The importance of understanding the underlying models, along with the assumptions required by each definition to determine a value of persistence length, is highlighted for linear dichroism data, where it transpires that no model is currently available for long DNA or medium to high shear rate experiments.
Li, Xiaosong; Zhu, Junke; Lai, Guoqi; Yan, Lei; Hu, Jieli; Chen, Juan; Tang, Ni; Huang, Ailong
2015-01-01
Studies on molecular mechanisms of the persist infection of hepatitis B virus have been hampered by a lack of a robust animal model. We successfully established a simple, versatile, and reproducible HBV persist infection model in vitro and in vivo with the circularized HBV DNA. The cells and mice were transfected or injected with circularized HBV DNA and pAAV/HBV1.2, respectively. At the indicated time, the cells, supernatants, serum samples, and liver tissues were collected for virological and serological detection. Both in vitro and in vivo, the circularized HBV DNA and pAAV/HBV1.2 could replicate and transcribe efficiently, but the infection effect of the former was superior to the latter (p HBV genome DNA into the mice robustly supported HBV infection and approximately 80% of HBV infected mice established persistent infection for at least 10 weeks. This study demonstrated that the infection efficiency and replication ability of the circularized structure of HBV DNA overmatched that of the expression plasmid containing the linear structure of HBV DNA in vitro and in vivo. Meanwhile, this research results could provide useful tools and methodology for further study of pathogenic mechanisms and potential antiviral treatments of human chronic HBV infection in vitro and in vivo. PMID:25751726
Reversed magnetic shear suppression of electron-scale turbulence on NSTX
Yuh, Howard Y.; Levinton, F. M.; Bell, R. E.; Hosea, J. C.; Kaye, S. M.; Leblanc, B. P.; Mazzucato, E.; Smith, D. R.; Domier, C. W.; Luhmann, N. C.; Park, H. K.
2009-11-01
Electron thermal internal transport barriers (e-ITBs) are observed in reversed (negative) magnetic shear NSTX discharges^1. These e-ITBs can be created with either neutral beam heating or High Harmonic Fast Wave (HHFW) RF heating. The e-ITB location occurs at the location of minimum magnetic shear determined by Motional Stark Effect (MSE) constrained equilibria. Statistical studies show a threshold condition in magnetic shear for e-ITB formation. High-k fluctuation measurements at electron turbulence wavenumbers^3 have been made under several different transport regimes, including a bursty regime that limits temperature gradients at intermediate magnetic shear. The growth rate of fluctuations has been calculated immediately following a change in the local magnetic shear, resulting in electron temperature gradient relaxation. Linear gyrokinetic simulation results for NSTX show that while measured electron temperature gradients exceed critical linear thresholds for ETG instability, growth rates can remain low under reversed shear conditions up to high electron temperatures gradients. ^1H. Yuh, et. al., PoP 16, 056120 ^2D.R. Smith, E. Mazzucato et al., RSI 75, 3840 ^3E. Mazzucato, D.R. Smith et al., PRL 101, 075001
Localization in inelastic rate dependent shearing deformations
Katsaounis, Theodoros
2016-09-18
Metals deformed at high strain rates can exhibit failure through formation of shear bands, a phenomenon often attributed to Hadamard instability and localization of the strain into an emerging coherent structure. We verify formation of shear bands for a nonlinear model exhibiting strain softening and strain rate sensitivity. The effects of strain softening and strain rate sensitivity are first assessed by linearized analysis, indicating that the combined effect leads to Turing instability. For the nonlinear model a class of self-similar solutions is constructed, that depicts a coherent localizing structure and the formation of a shear band. This solution is associated to a heteroclinic orbit of a dynamical system. The orbit is constructed numerically and yields explicit shear localizing solutions. © 2016 Elsevier Ltd
Localization in inelastic rate dependent shearing deformations
Katsaounis, Theodoros; Lee, Min-Gi; Tzavaras, Athanasios
2016-01-01
Metals deformed at high strain rates can exhibit failure through formation of shear bands, a phenomenon often attributed to Hadamard instability and localization of the strain into an emerging coherent structure. We verify formation of shear bands for a nonlinear model exhibiting strain softening and strain rate sensitivity. The effects of strain softening and strain rate sensitivity are first assessed by linearized analysis, indicating that the combined effect leads to Turing instability. For the nonlinear model a class of self-similar solutions is constructed, that depicts a coherent localizing structure and the formation of a shear band. This solution is associated to a heteroclinic orbit of a dynamical system. The orbit is constructed numerically and yields explicit shear localizing solutions. © 2016 Elsevier Ltd
Boiko, Andrey V; Grek, Genrih R; Kozlov, Victor V
2012-01-01
Starting from fundamentals of classical stability theory, an overview is given of the transition phenomena in subsonic, wall-bounded shear flows. At first, the consideration focuses on elementary small-amplitude velocity perturbations of laminar shear layers, i.e. instability waves, in the simplest canonical configurations of a plane channel flow and a flat-plate boundary layer. Then the linear stability problem is expanded to include the effects of pressure gradients, flow curvature, boundary-layer separation, wall compliance, etc. related to applications. Beyond the amplification of instability waves is the non-modal growth of local stationary and non-stationary shear flow perturbations which are discussed as well. The volume continues with the key aspect of the transition process, that is, receptivity of convectively unstable shear layers to external perturbations, summarizing main paths of the excitation of laminar flow disturbances. The remainder of the book addresses the instability phenomena found at l...
Sheared flow layer formation in tokamak plasmas with reversed magnetic shear
International Nuclear Information System (INIS)
Dong, J.Q.; Long, Y.X.; Mou, Z.Z.; Zhang, J.H.; Li, J.Q.
2005-01-01
Sheared flow layer (SFL) formation due to magnetic energy release through tearing-reconnections in tokamak plasmas is investigated. The characteristics of the SFLs created in the development of double tearing mode, mediated by electron viscosity in configurations with non-monotonic safety factor q profiles and, therefore, two rational flux surfaces of same q value, are analyzed in detail as an example. Quasi-linear simulations demonstrate that the sheared flows induced by the mode have desirable characteristics (lying at the boundaries of the magnetic islands), and sufficient levels required for internal transport barrier (ITB) formation. A possible correlation of the SFLs with experimental observations, that double transport barrier structures are preferentially formed in proximity of the two rational surfaces, is also proffered. (author)
Giammarinaro, Bruno; Espíndola, David; Coulouvrat, François; Pinton, Gianmarco
2018-01-01
Focusing is a ubiquitous way to transform waves. Recently, a new type of shock wave has been observed experimentally with high-frame-rate ultrasound: shear shock waves in soft solids. These strongly nonlinear waves are characterized by a high Mach number, because the shear wave velocity is much slower, by 3 orders of magnitude, than the longitudinal wave velocity. Furthermore, these waves have a unique cubic nonlinearity which generates only odd harmonics. Unlike longitudinal waves for which only compressional shocks are possible, shear waves exhibit cubic nonlinearities which can generate positive and negative shocks. Here we present the experimental observation of shear shock wave focusing, generated by the vertical motion of a solid cylinder section embedded in a soft gelatin-graphite phantom to induce linearly vertically polarized motion. Raw ultrasound data from high-frame-rate (7692 images per second) acquisitions in combination with algorithms that are tuned to detect small displacements (approximately 1 μ m ) are used to generate quantitative movies of gel motion. The features of shear shock wave focusing are analyzed by comparing experimental observations with numerical simulations of a retarded-time elastodynamic equation with cubic nonlinearities and empirical attenuation laws for soft solids.
International Nuclear Information System (INIS)
Synakowski, E.J.; Beer, M.A.
1997-02-01
The relaxation of core transport barriers in TFTR Enhanced Reversed Shear plasmas has been studied by varying the radial electric field using different applied torques from neutral beam injection. Transport rates and fluctuations remain low over a wide range of radial electric field shear, but increase when the local E x B shearing rates are driven below a threshold comparable to the fastest linear growth rates of the dominant instabilities. Shafranov-shift-induced stabilization alone is not able to sustain enhanced confinement
Shear layer characteristics of supersonic free and impinging jets
Davis, T. B.; Kumar, R.
2015-09-01
The initial shear layer characteristics of a jet play an important role in the initiation and development of instabilities and hence radiated noise. Particle image velocimetry has been utilized to study the initial shear layer development of supersonic free and impinging jets. Microjet control employed to reduce flow unsteadiness and jet noise appears to affect the development of the shear layer, particularly near the nozzle exit. Velocity field measurements near the nozzle exit show that the initially thin, uncontrolled shear layer develops at a constant rate while microjet control is characterized by a rapid nonlinear thickening that asymptotes downstream. The shear layer linear growth rate with microjet control, in both the free and the impinging jet, is diminished. In addition, the thickened shear layer with control leads to a reduction in azimuthal vorticity for both free and impinging jets. Linear stability theory is used to compute unstable growth rates and convection velocities of the resultant velocity profiles. The results show that while the convection velocity is largely unaffected, the unstable growth rates are significantly reduced over all frequencies with microjet injection. For the case of the impinging jet, microjet control leads to near elimination of the impingement tones and an appreciable reduction in broadband levels. Similarly, for the free jet, significant reduction in overall sound pressure levels in the peak radiation direction is observed.
Microturbulence and Flow Shear in High-performance JET ITB Plasma; TOPICAL
International Nuclear Information System (INIS)
R.V. Budny; A. Andre; A. Bicoulet; C. Challis; G.D. Conway; W. Dorland; D.R. Ernst; T.S. Hahm; T.C. Hender; D. McCune; G. Rewoldt; S.E. Sharapov
2001-01-01
The transport, flow shear, and linear growth rates of microturbulence are studied for a Joint European Torus (JET) plasma with high central q in which an internal transport barrier (ITB) forms and grows to a large radius. The linear microturbulence growth rates of the fastest growing (most unstable) toroidal modes with high toroidal mode number are calculated using the GS2 and FULL gyrokinetic codes. These linear growth rates, gamma (subscript lin) are large, but the flow-shearing rates, gamma (subscript ExB) (dominated by the toroidal rotation contribution) are also comparably large when and where the ITB exists
DNA-DNA hybridization determined in micro-wells using covalent attachment of DNA
DEFF Research Database (Denmark)
Christensen, H.; Angen, Øystein; Mutters, R.
2000-01-01
The present study was aimed at reducing the time and labour used to perform DNA-DNA hybridizations for classification of bacteria at the species level. A micro-well-format DNA hybridization method was developed and validated. DNA extractions were performed by a small-scale method and DNA...... was sheared mechanically into fragments of between 400 and 700 bases. The hybridization conditions were calibrated according to DNA similarities obtained by the spectrophotometric method using strains within the family Pasteurellaceae, Optimal conditions were obtained with 300 ng DNA added per well and bound...... by covalent attachment to NucleoLink. Hybridization was performed with 500 ng DNA, 5% (w/w) of which was labelled with photo-activatable biotin (competitive hybridization) for 2.5 h at 65 degrees C in 2 x SSC followed by stringent washing with 2 x SSC at the same temperature. The criteria for acceptance...
Directory of Open Access Journals (Sweden)
Nassim Kernou
2018-01-01
Full Text Available A rational three-dimensional nonlinear finite element model (NLFEAS is used for evaluating the behavior of high strength concrete slabs under monotonic transverse load. The non-linear equations of equilibrium have been solved using the incremental-iterative technique based on the modified Newton-Raphson method. The convergence of the solution was controlled by a load convergence criterion. The validity of the theoretical formulations and the program used was verified, through comparison with results obtained using ANSYS program and with available experimental test results. A parametric study was conducted to investigate the effect of different parameters on the behavior of slabs which was evaluated in terms of loaddeflection characteristics, concrete and steel stresses and strains, and failure mechanisms. Also, punching shear resistance of slabs was numerically evaluated and compared with the prediction specified by some design codes.
Solitary drift waves in the presence of magnetic shear
International Nuclear Information System (INIS)
Meiss, J.D.; Horton, W.
1982-07-01
The two-component fluid equations describing electron drift and ion acoustic waves in a nonuniform magnetized plasma are shown to possess nonlinear two-dimensional solitary wave solutions. In the presence of magnetic shear, radiative shear damping is exponentially small in L/sub s//L/sub n/ for solitary drift waves, in contrast to linear waves
Energy Technology Data Exchange (ETDEWEB)
Yavari, M., E-mail: yavari@iaukashan.ac.ir [Islamic Azad University, Kashan Branch (Iran, Islamic Republic of)
2016-06-15
We generalize the results of Nesterenko [13, 14] and Gogilidze and Surovtsev [15] for DNA structures. Using the generalized Hamiltonian formalism, we investigate solutions of the equilibrium shape equations for the linear free energy model.
Shear viscosity of liquid mixtures: Mass dependence
International Nuclear Information System (INIS)
Kaushal, Rohan; Tankeshwar, K.
2002-06-01
Expressions for zeroth, second, and fourth sum rules of transverse stress autocorrelation function of two component fluid have been derived. These sum rules and Mori's memory function formalism have been used to study shear viscosity of Ar-Kr and isotopic mixtures. It has been found that theoretical result is in good agreement with the computer simulation result for the Ar-Kr mixture. The mass dependence of shear viscosity for different mole fraction shows that deviation from ideal linear model comes even from mass difference in two species of fluid mixture. At higher mass ratio shear viscosity of mixture is not explained by any of the emperical model. (author)
Shear viscosity of liquid mixtures Mass dependence
Kaushal, R
2002-01-01
Expressions for zeroth, second, and fourth sum rules of transverse stress autocorrelation function of two component fluid have been derived. These sum rules and Mori's memory function formalism have been used to study shear viscosity of Ar-Kr and isotopic mixtures. It has been found that theoretical result is in good agreement with the computer simulation result for the Ar-Kr mixture. The mass dependence of shear viscosity for different mole fraction shows that deviation from ideal linear model comes even from mass difference in two species of fluid mixture. At higher mass ratio shear viscosity of mixture is not explained by any of the emperical model.
Shear-Induced Membrane Fusion in Viscous Solutions
Kogan, Maxim
2014-05-06
Large unilamellar lipid vesicles do not normally fuse under fluid shear stress. They might deform and open pores to relax the tension to which they are exposed, but membrane fusion occurring solely due to shear stress has not yet been reported. We present evidence that shear forces in a viscous solution can induce lipid bilayer fusion. The fusion of 1,2-dioleoyl-sn-glycero-3- phosphocholine (DOPC) liposomes is observed in Couette flow with shear rates above 3000 s-1 provided that the medium is viscous enough. Liposome samples, prepared at different viscosities using a 0-50 wt % range of sucrose concentration, were studied by dynamic light scattering, lipid fusion assays using Förster resonance energy transfer (FRET), and linear dichroism (LD) spectroscopy. Liposomes in solutions with 40 wt % (or more) sucrose showed lipid fusion under shear forces. These results support the hypothesis that under suitable conditions lipid membranes may fuse in response to mechanical-force- induced stress. © 2014 American Chemical Society.
Shear flow stabilization of the hydromagnetic Rayleigh-Taylor instability
International Nuclear Information System (INIS)
Roderick, N.F.; Shumlak, U.; Douglas, M.; Peterkin, R.E. Jr.; Ruden, E.
1997-01-01
Numerical simulations have indicated that shear flow may help stabilize the hydromagnetic Rayleigh-Taylor instability in imploding plasma z-pinches. A simple extension to a model presented in Chandrasekhar has been developed to study the linear stability of incompressible plasma subjected to both a shear flow and acceleration. The model has been used to investigate the stability plasma implosion schemes using externally imposed velocity shear which develops from the plasma flow itself. Specific parameters were chosen to represent plasma implosions driven by the Saturn and PBFA-Z, pulsed power generators at Sandia National Laboratories. Results indicate a high shear is necessary to stabilize the z-pinch implosions studied
Directory of Open Access Journals (Sweden)
Xuejuan Zi
2017-12-01
Full Text Available Objective The study explored the dynamics of shearing force and its correlation with chemical compositions and in vitro dry matter digestibility (IVDMD of stylo. Methods The shearing force, diameter, linear density, chemical composition, and IVDMD of different height stylo stem were investigated. Linear regression analysis was done to determine the relationships between the shearing force and cut height, diameter, chemical composition, or IVDMD. Results The results showed that shearing force of stylo stem increased with plant height increasing and the crude protein (CP content and IVDMD decreased but fiber content increased over time, resulting in decreased forage value. In addition, tall stem had greater shearing force than short stem. Moreover, shearing force is positively correlated with stem diameter, linear density and fiber fraction, but negatively correlated with CP content and IVDMD. Conclusion Overall, shearing force is an indicator more direct, easier and faster to measure than chemical composition and digestibility for evaluation of forage nutritive value related to animal performance. Therefore, it can be used to evaluate the nutritive value of stylo.
Directory of Open Access Journals (Sweden)
Korjenic Sinan
2015-11-01
Full Text Available This paper is about the shear capacity of partition walls in old buildings based on shear tests which were carried out under real conditions in an existing building. There were experiments conducted on different floors and in each case, the maximum recordable horizontal force and the horizontal displacement of the respective mortar were measured. At the same time material studies and material investigations were carried out in the laboratory. The material parameters were used for the calculation of the precise shear capacity of each joint. In the shear tests, the maximum displacement of a mortar joint was determined at a maximum of two to four millimetres. Furthermore, no direct linear relationship between the theoretical load (wall above it and the shear stress occurred could be detected in the analysis of the experiment, as it was previously assumed.
Korjenic, Sinan; Nowak, Bernhard; Löffler, Philipp; Vašková, Anna
2015-11-01
This paper is about the shear capacity of partition walls in old buildings based on shear tests which were carried out under real conditions in an existing building. There were experiments conducted on different floors and in each case, the maximum recordable horizontal force and the horizontal displacement of the respective mortar were measured. At the same time material studies and material investigations were carried out in the laboratory. The material parameters were used for the calculation of the precise shear capacity of each joint. In the shear tests, the maximum displacement of a mortar joint was determined at a maximum of two to four millimetres. Furthermore, no direct linear relationship between the theoretical load (wall above it) and the shear stress occurred could be detected in the analysis of the experiment, as it was previously assumed.
High Resolution Shear Profile Measurements in Entangled Polymers
Hayes, Keesha A.
2008-11-17
We use confocal microscopy and particle image velocimetry to visualize motion of 250-300 nm. fluorescent tracer particles in entangled polymers subject to a rectilinear shear flow. Our results show linear velocity profiles in polymer solutions spanning a wide range of molecular weights and number of entanglements (8≤Z≤56), but reveal large differences between the imposed and measured shear rates. These findings disagree with recent reports that shear banding is a characteristic flow response of entangled polymers, and instead point to interfacial slip as an important source of strain loss. © 2008 The American Physical Society.
Energy Technology Data Exchange (ETDEWEB)
J Squire, A Bhattacharjee [Princeton Plasma Physics Lab. (PPPL), Princeton, NJ (United States)
2014-07-01
We study the magnetorotational instability (MRI) (Balbus & Hawley 1998) using non-modal stability techniques.Despite the spectral instability of many forms of the MRI, this proves to be a natural method of analysis that is well-suited to deal with the non-self-adjoint nature of the linear MRI equations. We find that the fastest growing linear MRI structures on both local and global domains can look very diff erent to the eigenmodes, invariably resembling waves shearing with the background flow (shear waves). In addition, such structures can grow many times faster than the least stable eigenmode over long time periods, and be localized in a completely di fferent region of space. These ideas lead – for both axisymmetric and non-axisymmetric modes – to a natural connection between the global MRI and the local shearing box approximation. By illustrating that the fastest growing global structure is well described by the ordinary diff erential equations (ODEs) governing a single shear wave, we find that the shearing box is a very sensible approximation for the linear MRI, contrary to many previous claims. Since the shear wave ODEs are most naturally understood using non-modal analysis techniques, we conclude by analyzing local MRI growth over finite time-scales using these methods. The strong growth over a wide range of wave-numbers suggests that non-modal linear physics could be of fundamental importance in MRI turbulence (Squire & Bhattacharjee 2014).
Length and activation dependent variations in muscle shear wave speed
International Nuclear Information System (INIS)
Chernak, L A; DeWall, R J; Lee, K S; Thelen, D G
2013-01-01
Muscle stiffness is known to vary as a result of a variety of disease states, yet current clinical methods for quantifying muscle stiffness have limitations including cost and availability. We investigated the capability of shear wave elastography (SWE) to measure variations in gastrocnemius shear wave speed induced via active contraction and passive stretch. Ten healthy young adults were tested. Shear wave speeds were measured using a SWE transducer positioned over the medial gastrocnemius at ankle angles ranging from maximum dorsiflexion to maximum plantarflexion. Shear wave speeds were also measured during voluntary plantarflexor contractions at a fixed ankle angle. Average shear wave speed increased significantly from 2.6 to 5.6 m s –1 with passive dorsiflexion and the knee in an extended posture, but did not vary with dorsiflexion when the gastrocnemius was shortened in a flexed knee posture. During active contractions, shear wave speed monotonically varied with the net ankle moment generated, reaching 8.3 m s –1 in the maximally contracted condition. There was a linear correlation between shear wave speed and net ankle moment in both the active and passive conditions; however, the slope of this linear relationship was significantly steeper for the data collected during passive loading conditions. The results show that SWE is a promising approach for quantitatively assessing changes in mechanical muscle loading. However, the differential effect of active and passive loading on shear wave speed makes it important to carefully consider the relevant loading conditions in which to use SWE to characterize in vivo muscle properties. (paper)
Probabilistic Cosmological Mass Mapping from Weak Lensing Shear
Energy Technology Data Exchange (ETDEWEB)
Schneider, M. D.; Dawson, W. A. [Lawrence Livermore National Laboratory, Livermore, CA 94551 (United States); Ng, K. Y. [University of California, Davis, Davis, CA 95616 (United States); Marshall, P. J. [Kavli Institute for Particle Astrophysics and Cosmology, Stanford University, Stanford, CA 94035 (United States); Meyers, J. E. [Department of Astrophysical Sciences, Princeton University, Princeton, NJ 08544 (United States); Bard, D. J., E-mail: schneider42@llnl.gov, E-mail: dstn@cmu.edu, E-mail: boutigny@in2p3.fr, E-mail: djbard@slac.stanford.edu, E-mail: jmeyers314@stanford.edu [National Energy Research Scientific Computing Center, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720-8150 (United States)
2017-04-10
We infer gravitational lensing shear and convergence fields from galaxy ellipticity catalogs under a spatial process prior for the lensing potential. We demonstrate the performance of our algorithm with simulated Gaussian-distributed cosmological lensing shear maps and a reconstruction of the mass distribution of the merging galaxy cluster Abell 781 using galaxy ellipticities measured with the Deep Lens Survey. Given interim posterior samples of lensing shear or convergence fields on the sky, we describe an algorithm to infer cosmological parameters via lens field marginalization. In the most general formulation of our algorithm we make no assumptions about weak shear or Gaussian-distributed shape noise or shears. Because we require solutions and matrix determinants of a linear system of dimension that scales with the number of galaxies, we expect our algorithm to require parallel high-performance computing resources for application to ongoing wide field lensing surveys.
Laboratory investigation of nonlinear flow characteristics in rough fractures during shear process
Rong, Guan; Yang, Jie; Cheng, Long; Zhou, Chuangbing
2016-10-01
To understand the influence of shear behavior on the transporting properties of fluid through a single fracture, splitting fractures were made in the laboratory and shear flow tests were carried out under constant normal load conditions. The applied normal stress is in the range of 0.5-3.0 MPa. Before the physical test, the fracture's morphology is measured for identification of the roughness. At each shear step, we performed 5-8 high precise hydraulic tests with different hydraulic gradient. The relationship between pressure gradient and volume flow rate demonstrates to be nonlinear and fits very well with Forchheimer's and Izbash's laws. The linear and nonlinear coefficients in Forchheimer's law are quite sensitive to shear deformation (closure or dilation), experienced 1-2 and 1-3 orders of magnitude reduction during shear, respectively. An empirical equation is proposed to quantify the relationship between linear coefficient and nonlinear coefficient based on the experimental observations. The two coefficients in Izbash's law are quantified. The m value is in the range between 1.06 and 1.41 and the λ value experiences a reduction of 1-2 orders of magnitude during shear. In addition, the studied critical Reynolds number exhibits a decreasing and increasing variation corresponding to shear contraction and shear dilation of rock fracture. For all the cases in this study, the critical Reynolds number ranges between 1.5 and 13.0.
Origins of Shear Jamming for Frictional Grains
Wang, Dong; Zheng, Hu; Ren, Jie; Dijksman, Joshua; Bares, Jonathan; Behringer, Robert
2016-11-01
Granular systems have been shown to be able to behave like solids, under shear, even when their densities are below the critical packing fraction for frictionless isotropic jamming. To understand such a phenomena, called shear jamming, the question we address here is: how does shear bring a system from a unjammed state to a jammed state, where the coordination number, Z, is no less than 3, the isotropic jamming point for frictional grains? Since Z can be used to distinguish jammed states from unjammed ones, it is vital to understand how shear increases Z. We here propose a set of three particles in contact, denoted as a trimer, as the basic unit to characterize the deformation of the system. Trimers, stabilized by inter-grain friction, fail under a certain amount of shear and bend to make extra contacts to regain stability. By defining a projection operator of the opening angle of the trimer to the compression direction in the shear, O, we see a systematically linear decrease of this quantity with respect to shear strain, demonstrating the bending of trimers as expected. In addition, the average change of O from one shear step to the next shows a good collapse when plotted against Z, indicating a universal behavior in the process of shear jamming. We acknowledge support from NSF DMR1206351, NASA NNX15AD38G, the William M. Keck Foundation and a RT-MRSEC Fellowship.
Local particle flux reversal under strongly sheared flow
International Nuclear Information System (INIS)
Terry, P.W.; Newman, D.E.; Ware, A.S.
2003-01-01
The advection of electron density by turbulent ExB flow with linearly varying mean yields a particle flux that can reverse sign at certain locations along the direction of magnetic shear. The effect, calculated for strong flow shear, resides in the density-potential cross phase. It is produced by the interplay between the inhomogeneities of magnetic shear and flow shear, but subject to a variety of conditions and constraints. The regions of reversed flux tend to wash out if the turbulence consists of closely spaced modes of different helicities, but survive if modes of a single helicity are relatively isolated. The reversed flux becomes negligible if the electron density response is governed by electron scales while the eigenmode is governed by ion scales. The relationship of these results to experimentally observe flux reversals is discussed
Evaluating interfacial shear stresses in composite hollo
Directory of Open Access Journals (Sweden)
Aiham Adawi
2016-09-01
Full Text Available Analytical evaluation of the interfacial shear stresses for composite hollowcore slabs with concrete topping is rare in the literature. Adawi et al. (2014 estimated the interfacial shear stiffness coefficient (ks that governs the behavior of the interface between hollowcore slabs and the concrete topping using push-off tests. This parameter is utilized in this paper to provide closed form solutions for the differential equations governing the behavior of simply supported composite hollowcore slabs. An analytical solution based on the deformation compatibility of the composite section and elastic beam theory, is developed to evaluate the shear stresses along the interface. Linear finite element modeling of the full-scale tests presented in Adawi et al. (2015 is also conducted to validate the developed analytical solution. The proposed analytical solution was found to be adequate in estimating the magnitude of horizontal shear stress in the studied composite hollowcore slabs.
Seismic behavior of reinforced concrete shear walls
International Nuclear Information System (INIS)
Wang, F.; Gantenbein, F.
1989-01-01
Reinforced concrete shear walls have an important contribution to building stiffness. So, it is necessary to know their behavior under seismic loads. The ultimate behavior study of shear walls subjected to dynamic loadings includes: - a description of the nonlinear global model based on cyclic static tests, - nonlinear time history calculations for various forcing functions. The comparison of linear and nonlinear results shows important margins related to the ductility when the bandwidth of the forcing function is narrow and centred on the wall natural frequency
Size distribution of DNA molecules recovered from non-denaturing filter elution
International Nuclear Information System (INIS)
Bloecher, D.; Iliakis, G.
1991-01-01
DNA fragments removed from the filter during non-denaturing filter elution were collected and loaded on top of neutral sucrose gradients. Their size distribution was determined by low-speed centrifugation in neutral sucrose gradients. The average size of eluted DNA was found to be approximately 110 S; the average size of DNA collected after short elution times was found to be slightly larger than after long elution times. It is concluded that the size of eluted DNA fragments is not correlated with elution rate, and it is proposed that shear forces generated at the filter pores cause degradation of the DNA. Comparison of sedimentation profiles of carefully prepared cellular DNA before and after elution revealed that generated shear forces during elution break down DNA to an extent equivalent to around 20 000 DNA double-strand breaks (dsb) per G 1 cell. The size of DNA fragments decreased with increasing radiation dose; five times more dsb were found than expected after exposure to radiation alone. It is proposed that excess of dsb may derive from the transformation of other radiation-induced lesions to dsb under the action of shear forces generated during elution. (author)
Gadkar, Vijay J; Filion, Martin
2013-06-01
In various experimental systems, limiting available amounts of RNA may prevent a researcher from performing large-scale analyses of gene transcripts. One way to circumvent this is to 'pre-amplify' the starting RNA/cDNA, so that sufficient amounts are available for any downstream analysis. In the present study, we report the development of a novel protocol for constructing amplified cDNA libraries using the Phi29 DNA polymerase based multiple displacement amplification (MDA) system. Using as little as 200 ng of total RNA, we developed a linear concatenation strategy to make the single-stranded cDNA template amenable for MDA. The concatenation, made possible by the template switching property of the reverse transcriptase enzyme, resulted in the amplified cDNA library with intact 5' ends. MDA generated micrograms of template, allowing large-scale polymerase chain reaction analyses or other large-scale downstream applications. As the amplified cDNA library contains intact 5' ends, it is also compatible with 5' RACE analyses of specific gene transcripts. Empirical validation of this protocol is demonstrated on a highly characterized (tomato) and an uncharacterized (corn gromwell) experimental system.
Hybrid simulations of current-carrying instabilities in Z-pinch plasmas with sheared axial flow
International Nuclear Information System (INIS)
Sotnikov, Vladimir I.; Makhin, Volodymyr; Bauer, Bruno S.; Hellinger, Petr; Travnicek, Pavel; Fiala, Vladimir; Leboeuf, Jean-Noel
2002-01-01
The development of instabilities in z-pinch plasmas has been studied with three-dimensional (3D) hybrid simulations. Plasma equilibria without and with sheared axial flow have been considered. Results from the linear phase of the hybrid simulations compare well with linear Hall magnetohydrodynamics (MHD) calculations for sausage modes. The hybrid simulations show that sheared axial flow has a stabilizing effect on the development of both sausage and kink modes
Mutant DNA quantification by digital PCR can be confounded by heating during DNA fragmentation.
Kang, Qing; Parkin, Brian; Giraldez, Maria D; Tewari, Muneesh
2016-04-01
Digital PCR (dPCR) is gaining popularity as a DNA mutation quantification method for clinical specimens. Fragmentation prior to dPCR is required for non-fragmented genomic DNA samples; however, the effect of fragmentation on DNA analysis has not been well-studied. Here we evaluated three fragmentation methods for their effects on dPCR point mutation assay performance. Wild-type (WT) human genomic DNA was fragmented by heating, restriction digestion, or acoustic shearing using a Covaris focused-ultrasonicator. dPCR was then used to determine the limit of blank (LoB) by quantifying observed WT and mutant allele counts of the proto-oncogenes KRAS and BRAF in the WT DNA sample. DNA fragmentation by heating to 95°C, while the simplest and least expensive method, produced a high background mutation frequency for certain KRAS mutations relative to the other methods. This was due to heat-induced mutations, specifically affecting dPCR assays designed to interrogate guanine to adenine (G>A) mutations. Moreover, heat-induced fragmentation overestimated gene copy number, potentially due to denaturation and partition of single-stranded DNA into different droplets. Covaris acoustic shearing and restriction enzyme digestion showed similar LoBs and gene copy number estimates to one another. It should be noted that moderate heating, commonly used in genomic DNA extraction protocols, did not significantly increase observed KRAS mutation counts.
Energy Technology Data Exchange (ETDEWEB)
Bagherpour, E., E-mail: e.bagherpour@semnan.ac.ir [Faculty of Metallurgical and Materials Engineering, Semnan University, Semnan (Iran, Islamic Republic of); Department of Mechanical Engineering, Doshisha University, Kyotanabe, Kyoto 610–0394 (Japan); Qods, F., E-mail: qods@semnan.ac.ir [Faculty of Metallurgical and Materials Engineering, Semnan University, Semnan (Iran, Islamic Republic of); Ebrahimi, R., E-mail: ebrahimy@shirazu.ac.ir [Department of Materials Science and Engineering, School of Engineering, Shiraz University, Shiraz (Iran, Islamic Republic of); Miyamoto, H., E-mail: hmiyamot@mail.doshisha.ac.jp [Department of Mechanical Engineering, Doshisha University, Kyotanabe, Kyoto 610–0394 (Japan)
2016-06-01
In the present paper the role of shear reversal on microstructure, texture and mechanical properties of pure copper during a single pass of the simple shear extrusion (SSE) process was investigated. For SSE processing an appropriate die with a linear die profile was designed and constructed, which imposes forward shear in the first half and reverse shear in the second half channels. Electron back-scattering diffraction (EBSD), transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) were used to evaluate the microstructure of the deformed samples. The geometrical nature of this process imposes a distribution of strain results in the inhomogeneous microstructure and the hardness throughout the plane perpendicular to the extrusion direction. Strain reversal during the process results in a slight reduction in dislocation density, the hardness and mean disorientation angle of the samples, and an increase in the grain size. After a complete pass of SSE, dislocation density decreased by ~14% if compared to the middle of the process. This suggests that the dislocation annihilation occurred by the reversal of the shear strain. The simple shear textures were formed gradually and the strongest simple shear textures were observed on the middle of the SSE channel. The degree of the simple shear textures decreases with the distance from the middle plane where the shear is reversed, but the simple shear textures are still the major components after exit of the channel. Hardness variation was modeled by contributions from dislocation strengthening and grain boundary strengthening, where dislocation density is approximated by the misorientation angle of LAGBs which are regarded as dislocation cell boundaries. As a result, the hardness can be predicted successfully by the microstructural features, i.e. the low-angle boundaries, the mean misorientation angle and the fraction of high-angle grain boundaries.
Viscoelasticity, nonlinear shear start-up, and relaxation of entangled star polymers
Snijkers, Frank
2013-07-23
We report on a detailed rheological investigation of well-defined symmetric entangled polymer stars of low functionality with varying number of arms, molar mass of the arms, and solvent content. Emphasis is placed on the response of the stars in simple shear, during start-up, and for relaxation upon flow cessation. To reduce experimental artifacts associated with edge fracture (primarily) and wall slip, we employ a homemade cone-partitioned plate fixture which was successfully implemented in recent studies. Reliable data for these highly entangled stars could be obtained for Weissenberg numbers below 300. The appearance of a stress overshoot during start-up with a corresponding strain approaching a value of 2 suggests that in the investigated shear regime the stars orient but do not stretch. This is corroborated by the fact that the empirical Cox-Merx rule appears to be validated, within experimental error. On the other hand, the (shear) rate dependent steady shear viscosity data exhibit a slope smaller than the convective constraint release slope of -1 (for linear polymers) for the investigated range of rates. The broadness of the stress overshoot reflects the broad linear relaxation spectrum of the stars. The initial stress relaxation rate, reflecting the initial loss of entanglements due to the action of convective constraint release in steady shear flow, increases with Weissenberg number. More importantly, when compared against the relevant rates for comb polymers with relatively short arms, the latter are slower at larger Weissenberg numbers. At long times, the relaxation data are consistent with the linear viscoelastic data on these systems. © 2013 American Chemical Society.
Observation of Droplet Size Oscillations in a Two Phase Fluid under Shear Flow
Courbin, Laurent; Panizza, Pascal
2004-11-01
It is well known that complex fluids exhibit strong couplings between their microstructure and the flow field. Such couplings may lead to unusual non linear rheological behavior. Because energy is constantly brought to the system, richer dynamic behavior such as non linear oscillatory or chaotic response is expected. We report on the observation of droplet size oscillations at fixed shear rate. At low shear rates, we observe two steady states for which the droplet size results from a balance between capillary and viscous stress. For intermediate shear rates, the droplet size becomes a periodic function of time. We propose a phenomenological model to account for the observed phenomenon and compare numerical results to experimental data.
Energy Technology Data Exchange (ETDEWEB)
Yoon, Jeongha; Kim, Jinseong; Baig, Chunggi, E-mail: cbaig@unist.ac.kr [Department of Chemical Engineering, School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan 689-798 (Korea, Republic of)
2016-07-15
We present detailed results for the structural and rheological properties of unknotted and unconcatenated ring polyethylene (PE) melts under shear and elongation flows via direct atomistic nonequilibrium molecular dynamics simulations. Short (C{sub 78}H{sub 156}) and long (C{sub 400}H{sub 800}) ring PE melts were subjected to planar Couette flow (PCF) and planar elongational flow (PEF) across a wide range of strain rates from linear to highly nonlinear flow regimes. The results are analyzed in detail through a direct comparison with those of the corresponding linear polymers. We found that, in comparison to their linear analogs, ring melts possess rather compact chain structures at or near the equilibrium state and exhibit a considerably lesser degree of structural deformation with respect to the applied flow strength under both PCF and PEF. The large structural resistance of ring polymers against an external flow field is attributed to the intrinsic closed-loop configuration of the ring and the topological constraint of nonconcatenation between ring chains in the melt. As a result, there appears to be a substantial discrepancy between ring and linear systems in terms of their structural and rheological properties such as chain orientation, the distribution of chain dimensions, viscosity, flow birefringence, hydrostatic pressure, the pair correlation function, and potential interaction energies. The findings and conclusions drawn in this work would be a useful guide in future exploration of the characteristic dynamical and relaxation mechanisms of ring polymers in bulk or confined systems under flowing conditions.
Finite element analyses for Seismic Shear Wall International Standard Problem
International Nuclear Information System (INIS)
Park, Y.; Hofmayer, C.; Chokshi, N.
1997-01-01
In the seismic design of shear wall structures, e.g., nuclear reactor buildings, a linear FEM analysis is frequently used to quantify the stresses under the design loading condition. The final design decisions, however, are still based on empirical design rules established over decades from accumulated laboratory test data. This paper presents an overview of the state-of-the-art on the application of nonlinear FEM analysis to reinforced concrete (RC) shear wall structures under severe earthquake loadings based on the findings obtained during the Seismic Shear Wall International Standard Problem (SSWISP) Workshop in 1996. Also, BNL's analysis results of the International Standard Problem (ISP) shear walls under monotonic static, cyclic static and dynamic loading conditions are described
Linear and nonlinear electrostatic modes in a nonuniform magnetized electron plasma
International Nuclear Information System (INIS)
Vranjes, J.; Shukla, P.K.; Kono, M.; Poedts, S.
2001-01-01
Linear and nonlinear low-frequency modes in a magnetized electron plasma are studied, taking into account a proper description of the equilibrium plasma state that is inhomogeneous. Assuming a homogeneous magnetic field and sheared plasma flows, flute-like perturbations are studied in the presence of density and potential gradients. Linear analysis reveals the presence of a streaming instability and depicts conditions for global linear spiral mode. In the nonlinear domain, a tripolar vortex, which is driven and carried by the flow, is found. Also investigated are the consequences of a magnetic shear as well as nonuniformities along the magnetic field lines, which are shown to be responsible for the possible annulment of the magnetic shear effects. Streaming along the lines of the sheared magnetic field is also studied. A variety of nonlinear structures (viz. global multipolar vortices, local vortex chains, and tripolar vortices) is shown to be the consequence of the simultaneous action of the parallel and perpendicular flows
From stripe to slab confinement for DNA linearization in nanochannels
Cifra, Peter; Benkova, Zuzana; Namer, Pavol
We investigate suggested advantageous analysis in the linearization experiments with macromolecules confined in a stripe-like channel using Monte Carlo simulations. The enhanced chain extension in a stripe that is due to significant excluded volume interactions between monomers in two dimensions weakens on transition to experimentally feasible slit-like channel. Based on the chain extension-confinement strength dependence and the structure factor behavior for the chain in stripe we infer the excluded volume regime typical for two-dimensional systems. On transition to the slab geometry, the advantageous chain extension decreases and the Gaussian regime is observed for not very long semiflexible chains. The evidence for pseudo-ideality in confined chains is based on indicators such as the extension curves, variation of the extension with the persistence length or the structure factor. The slab behavior is observed when the stripe (originally of monomer thickness) reaches the thickness larger than cca 10nm in the third dimension. This maximum height of the slab to retain the advantage of the stripe is very low and this have implication for DNA linearization experiments. The presented analysis, however, has a broader relevance for confined polymers. Support from Slovak R&D Agency (SRDA-0451-11) is acknowledged.
Out-of-plane ultimate shear strength of RC mat-slab foundations
International Nuclear Information System (INIS)
Kumagai, Hitoshi; Nukui, Yasushi; Imamura, Akira; Terayama, Takeshi; Hagiwara, Tetsuya; Kojima, Isao
2011-01-01
There have been few studies on the out-of-plane shear in RC mat-slab foundations, and the reasonable method has been demanded to estimate ultimate shear strength of RC mat-slab foundations in the nuclear facilities. In the previous study, the out-of-plane loading tests on the 20 square slab specimens had been performed to collect the fundamental data. In this study, the test results were successfully predicted by 3D non-linear Finite Element Analysis. It has been confirmed that the ultimate shear stress in the slab specimen can be estimated by the Arakawa's formula, which is commonly used to estimate the shear strength of RC beams. (author)
Velocity shear generated Alfven waves in electron-positron plasmas
International Nuclear Information System (INIS)
Rogava, A.D.; Berezhiani, V.I.; Mahajan, S.M.
1996-01-01
Linear MHD modes in cold, nonrelativistic electron-positron plasma shear flow are considered. The general set of differential equations, describing the evolution of perturbations in the framework of the nonmodal approach is derived. It is found, that under certain circumstances, the compressional and shear Alfven perturbations may exhibit large transient growth fuelled by the mean kinetic energy of the shear flow. The velocity shear also induces mode coupling allowing the exchange of energy as well as the possibility of a strong mutual transformation of these modes into each other. The compressional Alfven mode may extract the energy of the mean flow and transfer it to the shear Alfven mode via this coupling. The relevance of these new physical effects to provide a better understanding of the laboratory e + e - plasma is emphasized. It is speculated that the shear-induced effects in the electron-positron plasmas could also help solve some astrophysical puzzles (e.g., the generation of pulsar radio emission). Since most astrophysical plasma are relativistic, it is shown that the major results of the study remain valid for weakly sheared relativistic plasmas. (author). 21 refs, 4 figs
Shear-stress fluctuations and relaxation in polymer glasses
Kriuchevskyi, I.; Wittmer, J. P.; Meyer, H.; Benzerara, O.; Baschnagel, J.
2018-01-01
We investigate by means of molecular dynamics simulation a coarse-grained polymer glass model focusing on (quasistatic and dynamical) shear-stress fluctuations as a function of temperature T and sampling time Δ t . The linear response is characterized using (ensemble-averaged) expectation values of the contributions (time averaged for each shear plane) to the stress-fluctuation relation μsf for the shear modulus and the shear-stress relaxation modulus G (t ) . Using 100 independent configurations, we pay attention to the respective standard deviations. While the ensemble-averaged modulus μsf(T ) decreases continuously with increasing T for all Δ t sampled, its standard deviation δ μsf(T ) is nonmonotonic with a striking peak at the glass transition. The question of whether the shear modulus is continuous or has a jump singularity at the glass transition is thus ill posed. Confirming the effective time-translational invariance of our systems, the Δ t dependence of μsf and related quantities can be understood using a weighted integral over G (t ) .
Synthesis, Characterization and DNA Cleavage of Copper(II ...
African Journals Online (AJOL)
Keywords: DNA shearing, Copper(II) complex, Dithiothreitol, Attenuated total reflectance-Fourier transform .... confirm the fragmentation of DNA by the newly .... sperm. Biochem Biophys Acta 1986; 884: 124-134. 7. Cornell NW, Crivaro KE.
Directory of Open Access Journals (Sweden)
Jorge A. Bertolotto
2016-06-01
Full Text Available In the present work we make a theoretical study of the steady state electric linear dichroism of DNA fragments in aqueous solution. The here developed theoretical approach considers a flexible bent rod model with a saturating induced dipole moment. The electric polarizability tensor of bent DNA fragments is calculated considering a phenomenological model which theoretical and experimental backgroung is presented here. The model has into account the electric polarizability longitudinal and transversal to the macroion. Molecular flexibility is described using an elastic potential. We consider DNA fragments originally bent with bending fluctuations around an average bending angle. The induced dipole moment is supposed constant once the electric field strength grows up at critical value. To calculate the reduced electric linear dichroism we determine the optical factor considering the basis of the bent DNA perpendicular to the molecular axis. The orientational distribution function has into account the anisotropic electric properties and the molecule flexibility. We applied the present theoretical background to fit electric dichroism experimental data of DNA fragments reported in the bibliography in a wide range of molecular weight and electric field. From these fits, values of DNA physical properties are estimated. We compare and discuss the results here obtained with the theoretical and experimental data presented by other authors. The original contributions of this work are: the inclusion of the transversal electric polarizability saturating with the electric field, the description of the electric properties with an electric polarizability tensor dependant on the bending angle and the use of an arc model originally bent.
Bertolotto, Jorge A.; Umazano, Juan P.
2016-06-01
In the present work we make a theoretical study of the steady state electric linear dichroism of DNA fragments in aqueous solution. The here developed theoretical approach considers a flexible bent rod model with a saturating induced dipole moment. The electric polarizability tensor of bent DNA fragments is calculated considering a phenomenological model which theoretical and experimental backgroung is presented here. The model has into account the electric polarizability longitudinal and transversal to the macroion. Molecular flexibility is described using an elastic potential. We consider DNA fragments originally bent with bending fluctuations around an average bending angle. The induced dipole moment is supposed constant once the electric field strength grows up at critical value. To calculate the reduced electric linear dichroism we determine the optical factor considering the basis of the bent DNA perpendicular to the molecular axis. The orientational distribution function has into account the anisotropic electric properties and the molecule flexibility. We applied the present theoretical background to fit electric dichroism experimental data of DNA fragments reported in the bibliography in a wide range of molecular weight and electric field. From these fits, values of DNA physical properties are estimated. We compare and discuss the results here obtained with the theoretical and experimental data presented by other authors. The original contributions of this work are: the inclusion of the transversal electric polarizability saturating with the electric field, the description of the electric properties with an electric polarizability tensor dependant on the bending angle and the use of an arc model originally bent.
Enhanced shear strength of sodium bentonite using frictional additives
International Nuclear Information System (INIS)
Schmitt, K.E.; Bowders, J.J.; Gilbert, R.B.; Daniel, D.E.
1997-01-01
One of the most important obstacles to using geosynthetic clay liners (GCLs) in landfill cover systems is the low shear strength provided by the bentonitic portion of the GCL. In this study, the authors propose that granular, frictional materials might be added to the bentonite to form an admixture that would have greater shear strength than the bentonite alone while still raining low hydraulic conductivity. Bentonite was mixed with two separate granular additives, expanded shale and recycled to form mixtures consisting of 20-70% bentonite by weight. In direct shear tests at normal stresses of 34.5-103.5 kPa, effective friction angles were measured as 45 degrees for the expanded 36 degrees for the recycled glass, and 7 degrees for the hydrated granular bentonite. The strength of the expanded shale mixtures increased nearly linearly as the percentage shale in the mixture increased, to 44 degrees for a bentonite mixture with 80% shale. The addition of recycled glass showed little effect on the shear strength of the mixtures of glass and bentonite. Hydraulic conductivity measurements for both types of mixtures indicated a linear increase with log(k) as the amount of granular additive increased. For applications involving geosynthetic clay liners for cover systems, a mixture of 40% expanded shale and 60% bentonite is recommended, although further testing must be done. The 40/60 mixture satisfies the hydraulic equivalency requirement, with k = 5.1X10 -9 cm/sec, while increasing the shear strength parameters of the bentonitic mixture to φ' = 17 degrees and c' = 0
Zi, Xuejuan; Li, Mao; Zhou, Hanlin; Tang, Jun; Cai, Yimin
2017-12-01
The study explored the dynamics of shearing force and its correlation with chemical compositions and in vitro dry matter digestibility (IVDMD) of stylo. The shearing force, diameter, linear density, chemical composition, and IVDMD of different height stylo stem were investigated. Linear regression analysis was done to determine the relationships between the shearing force and cut height, diameter, chemical composition, or IVDMD. The results showed that shearing force of stylo stem increased with plant height increasing and the crude protein (CP) content and IVDMD decreased but fiber content increased over time, resulting in decreased forage value. In addition, tall stem had greater shearing force than short stem. Moreover, shearing force is positively correlated with stem diameter, linear density and fiber fraction, but negatively correlated with CP content and IVDMD. Overall, shearing force is an indicator more direct, easier and faster to measure than chemical composition and digestibility for evaluation of forage nutritive value related to animal performance. Therefore, it can be used to evaluate the nutritive value of stylo.
Czech Academy of Sciences Publication Activity Database
Nosek, J.; Novotná, Marcela; Hlavaticová, Z.; Ussery, D. W.; Fajkus, Jiří; Tomáška, L.
2004-01-01
Roč. 272, č. 2 (2004), s. 173-180 ISSN 1617-4615 Grant - others:Howard Hughes Medical Institute(US) 55000327; VEGA MŠ SR(SK) 1/9153/02; VEGA MŠ SR(SK) 1/0006/03; APVT(SK) 20-003902; Fogarty International NIH(US) 1-R03-TW05654-01 Institutional research plan: CEZ:AV0Z5004920 Keywords : Candida parapsilosis * linear mitochondrial DNA * telomeric circles (t-circles) Subject RIV: BO - Biophysics Impact factor: 2.371, year: 2004
Turbulent shear layers in confining channels
Benham, Graham P.; Castrejon-Pita, Alfonso A.; Hewitt, Ian J.; Please, Colin P.; Style, Rob W.; Bird, Paul A. D.
2018-06-01
We present a simple model for the development of shear layers between parallel flows in confining channels. Such flows are important across a wide range of topics from diffusers, nozzles and ducts to urban air flow and geophysical fluid dynamics. The model approximates the flow in the shear layer as a linear profile separating uniform-velocity streams. Both the channel geometry and wall drag affect the development of the flow. The model shows good agreement with both particle image velocimetry experiments and computational turbulence modelling. The simplicity and low computational cost of the model allows it to be used for benchmark predictions and design purposes, which we demonstrate by investigating optimal pressure recovery in diffusers with non-uniform inflow.
Constitutive Curve and Velocity Profile in Entangled Polymers during Start-Up of Steady Shear Flow
Hayes, Keesha A.; Buckley, Mark R.; Qi, Haibo; Cohen, Itai; Archer, Lynden A.
2010-01-01
-4]. Surprisingly, we find that even polymer systems which exhibit transient, nonmonotonic shear stress-shear rate relationships in bulk rheology experiments manifest time-dependent velocity profiles that are decidedly linear and show no evidence of unstable flow
Shear waves in inhomogeneous, compressible fluids in a gravity field.
Godin, Oleg A
2014-03-01
While elastic solids support compressional and shear waves, waves in ideal compressible fluids are usually thought of as compressional waves. Here, a class of acoustic-gravity waves is studied in which the dilatation is identically zero, and the pressure and density remain constant in each fluid particle. These shear waves are described by an exact analytic solution of linearized hydrodynamics equations in inhomogeneous, quiescent, inviscid, compressible fluids with piecewise continuous parameters in a uniform gravity field. It is demonstrated that the shear acoustic-gravity waves also can be supported by moving fluids as well as quiescent, viscous fluids with and without thermal conductivity. Excitation of a shear-wave normal mode by a point source and the normal mode distortion in realistic environmental models are considered. The shear acoustic-gravity waves are likely to play a significant role in coupling wave processes in the ocean and atmosphere.
Shear flow generation by Reynolds stress and suppression of resistive g modes
International Nuclear Information System (INIS)
Sugama, H.; Horton, W.
1993-01-01
The authors have investigated suppression of the resistive g mode turbulence by background shear flow produced by the external source and by the fluctuation-induced Reynolds stress. For that purpose, the authors used the model consisting of the equations describing the electrostatic potential φ≡(φ 0 +φ) and the pressure fluctuation p of the resistive g mode, and the equation for the background poloidal flow. They have done the single-helicity nonlinear simulations using the model equations in the sheared slab configuration. They find that, in the nonlinear turbulent regime, significant suppression of the turbulent transport is realized only when the shear flow v' E exceeds that which makes the fastest-growing linear modes marginally stable. With the shear flow which decreases the fastest linear growth rates by about a half, the turbulent transport in the saturated state is about the same as in the case of no shear flow. As seen from the equation for the background flow v E , the relative efficiency of the external flow and the Reynolds stress for producing shear flow depends on the parameter ν. For large ν, the external flow is a dominant contribution to the total background poloidal shear flow although its strength predicted by the neoclassical theory is not enough to suppress the turbulence significantly. On the other hand, for small ν, they observe that, as the fluctuations grow, the Reynolds stress becomes large and suddenly at some critical point in time shear flow much larger than the external one is generated and leads to the significant reduction of the turbulent transport just like that of the L-H transition in tokamak experiments. It is remarkable that the Reynolds stress due to the resistive g mode fluctuations works not as a conventional viscosity term weakening the shear flow but as a negative viscosity term enhancing it
A non-linear procedure for the numerical analysis of crack development in beams failing in shear
Directory of Open Access Journals (Sweden)
P. Bernardi
2016-01-01
Full Text Available In this work, a consistent formulation for the representation of concrete behavior before and after cracking has been implemented into a non-linear model for the analysis of reinforced concrete structures, named 2D-PARC. Several researches have indeed pointed out that the adoption of an effective modeling for concrete, combined with an accurate failure criterion, is crucial for the correct prediction of the structural behavior, not only in terms of failure load, but also with reference to a realistic representation of crack initiation and development. This last aspect is particularly relevant at serviceability conditions in order to verify the fulfillment of structural requirements provided by Design Codes, which limit the maximum crack width due to appearance and durability issues. In more details, a constitutive model originally proposed by Ottosen and based on non-linear elasticity has been here incorporated into 2D-PARC in order to improve the numerical efficiency of the adopted algorithm, providing at the same time an accurate prediction of the structural response. The effectiveness of this procedure has been verified against significant experimental results available in the technical literature and relative to reinforced concrete beams without stirrups failing in shear, which represent a problem of great theoretical and practical importance in the field of structural engineering. Numerical results have been compared to experimental evidences not only in terms of global structural response (i.e. applied load vs. midspan deflection, but also in terms of crack pattern evolution and maximum crack widths.
Shear Elasticity and Shear Viscosity Imaging in Soft Tissue
Yang, Yiqun
In this thesis, a new approach is introduced that provides estimates of shear elasticity and shear viscosity using time-domain measurements of shear waves in viscoelastic media. Simulations of shear wave particle displacements induced by an acoustic radiation force are accelerated significantly by a GPU. The acoustic radiation force is first calculated using the fast near field method (FNM) and the angular spectrum approach (ASA). The shear waves induced by the acoustic radiation force are then simulated in elastic and viscoelastic media using Green's functions. A parallel algorithm is developed to perform these calculations on a GPU, where the shear wave particle displacements at different observation points are calculated in parallel. The resulting speed increase enables rapid evaluation of shear waves at discrete points, in 2D planes, and for push beams with different spatial samplings and for different values of the f-number (f/#). The results of these simulations show that push beams with smaller f/# require a higher spatial sampling rate. The significant amount of acceleration achieved by this approach suggests that shear wave simulations with the Green's function approach are ideally suited for high-performance GPUs. Shear wave elasticity imaging determines the mechanical parameters of soft tissue by analyzing measured shear waves induced by an acoustic radiation force. To estimate the shear elasticity value, the widely used time-of-flight method calculates the correlation between shear wave particle velocities at adjacent lateral observation points. Although this method provides accurate estimates of the shear elasticity in purely elastic media, our experience suggests that the time-of-flight (TOF) method consistently overestimates the shear elasticity values in viscoelastic media because the combined effects of diffraction, attenuation, and dispersion are not considered. To address this problem, we have developed an approach that directly accounts for all
International Nuclear Information System (INIS)
Astill, M.; Sunderland, A.; Waine, M.G.
1980-01-01
A shear machine for irradiated nuclear fuel elements has a replaceable shear assembly comprising a fuel element support block, a shear blade support and a clamp assembly which hold the fuel element to be sheared in contact with the support block. A first clamp member contacts the fuel element remote from the shear blade and a second clamp member contacts the fuel element adjacent the shear blade and is advanced towards the support block during shearing to compensate for any compression of the fuel element caused by the shear blade (U.K.)
Klapacz, Joanna; Pottenger, Lynn H.; Engelward, Bevin P.; Heinen, Christopher D.; Johnson, George E.; Clewell, Rebecca A.; Carmichael, Paul L.; Adeleye, Yeyejide; Andersen, Melvin E.
2016-01-01
From a risk assessment perspective, DNA-reactive agents are conventionally assumed to have genotoxic risks at all exposure levels, thus applying a linear extrapolation for low-dose responses. New approaches discussed here, including more diverse and sensitive methods for assessing DNA damage and DNA repair, strongly support the existence of measurable regions where genotoxic responses with increasing doses are insignificant relative to control. Model monofunctional alkylating agents have in vitro and in vivo datasets amenable to determination of points of departure (PoDs) for genotoxic effects. A session at the 2013 Society of Toxicology meeting provided an opportunity to survey the progress in understanding the biological basis of empirically-observed PoDs for DNA alkylating agents. Together with the literature published since, this review discusses cellular pathways activated by endogenous and exogenous alkylation DNA damage. Cells have evolved conserved processes that monitor and counteract a spontaneous steady-state level of DNA damage. The ubiquitous network of DNA repair pathways serves as the first line of defense for clearing of the DNA damage and preventing mutation. Other biological pathways discussed here that are activated by genotoxic stress include post-translational activation of cell cycle networks and transcriptional networks for apoptosis/cell death. The interactions of various DNA repair and DNA damage response pathways provide biological bases for the observed PoD behaviors seen with genotoxic compounds. Thus, after formation of DNA adducts, the activation of cellular pathways can lead to the avoidance a mutagenic outcome. The understanding of the cellular mechanisms acting within the low-dose region will serve to better characterize risks from exposures to DNA-reactive agents at environmentally-relevant concentrations. PMID:27036068
Direct Shear Behavior of Fiber Reinforced Concrete Elements
Directory of Open Access Journals (Sweden)
Hussein Al-Quraishi
2018-01-01
Full Text Available Improving the accuracy of load-deformation behavior, failure mode, and ultimate load capacity for reinforced concrete members subjected to in-plane loadings such as corbels, wall to foundation connections and panels need shear strength behavior to be included. Shear design in reinforced concrete structures depends on crack width, crack slippage and roughness of the surface of cracks. This paper illustrates results of an experimental investigation conducted to investigate the direct shear strength of fiber normal strength concrete (NSC and reactive powder concrete (RPC. The tests were performed along a pre-selected shear plane in concrete members named push-off specimens. The effectiveness of concrete compressive strength, volume fraction of steel fiber, and shear reinforcement ratio on shear transfer capacity were considered in this study. Furthermore, failure modes, shear stress-slip behavior, and shear stress-crack width behavior were also presented in this study. Tests’ results showed that volume fraction of steel fiber and compressive strength of concrete in NSC and RPC play a major role in improving the shear strength of concrete. As expectedly, due to dowel action, the shear reinforcement is the predominant factor in resisting the shear stress. The shear failure of NSC and RPC has the sudden mode of failure (brittle failure with the approximately linear behavior of shear stress-slip relationship till failure. Using RPC instead of NSC with the same amount of steel fibers in constructing the push-off specimen result in high shear strength. In NSC, shear strength influenced by the three major factors; crack surface friction, aggregate interlock and steel fiber content if present. Whereas, RPC has only steel fiber and cracks surface friction influencing the shear strength. Due to cementitious nature of RPC in comparisons with NSC, the RPC specimen shows greater cracks width. It is observed that the Mattock model gives very satisfactory
Dilatancy induced ductile-brittle transition of shear band in metallic glasses
Zeng, F.; Jiang, M. Q.; Dai, L. H.
2018-04-01
Dilatancy-generated structural disordering, an inherent feature of metallic glasses (MGs), has been widely accepted as the physical mechanism for the primary origin and structural evolution of shear banding, as well as the resultant shear failure. However, it remains a great challenge to determine, to what degree of dilatation, a shear banding will evolve into a runaway shear failure. In this work, using in situ acoustic emission monitoring, we probe the dilatancy evolution at the different stages of individual shear band in MGs that underwent severely plastic deformation by the controlled cutting technology. A scaling law is revealed that the dilatancy in a shear band is linearly related to its evolution degree. A transition from ductile-to-brittle shear bands is observed, where the formers dominate stable serrated flow, and the latter lead to a runaway instability (catastrophe failure) of serrated flow. To uncover the underlying mechanics, we develop a theoretical model of shear-band evolution dynamics taking into account an atomic-scale deformation process. Our theoretical results agree with the experimental observations, and demonstrate that the atomic-scale volume expansion arises from an intrinsic shear-band evolution dynamics. Importantly, the onset of the ductile-brittle transition of shear banding is controlled by a critical dilatation.
High strength semi-active energy absorbers using shear- and mixedmode operation at high shear rates
Becnel, Andrew C.
This body of research expands the design space of semi-active energy absorbers for shock isolation and crash safety by investigating and characterizing magnetorheological fluids (MRFs) at high shear rates ( > 25,000 1/s) under shear and mixed-mode operation. Magnetorheological energy absorbers (MREAs) work well as adaptive isolators due to their ability to quickly and controllably adjust to changes in system mass or impact speed while providing fail-safe operation. However, typical linear stroking MREAs using pressure-driven flows have been shown to exhibit reduced controllability as impact speed (shear rate) increases. The objective of this work is to develop MREAs that improve controllability at high shear rates by using pure shear and mixed shear-squeeze modes of operation, and to present the fundamental theory and models of MR fluids under these conditions. A proof of concept instrument verified that the MR effect persists in shear mode devices at shear rates corresponding to low speed impacts. This instrument, a concentric cylinder Searle cell magnetorheometer, was then used to characterize three commercially available MRFs across a wide range of shear rates, applied magnetic fields, and temperatures. Characterization results are presented both as flow curves according to established practice, and as an alternate nondimensionalized analysis based on Mason number. The Mason number plots show that, with appropriate correction coefficients for operating temperature, the varied flow curve data can be collapsed to a single master curve. This work represents the first shear mode characterization of MRFs at shear rates over 10 times greater than available with commercial rheometers, as well as the first validation of Mason number analysis to high shear rate flows in MRFs. Using the results from the magnetorheometer, a full scale rotary vane MREA was developed as part of the Lightweight Magnetorheological Energy Absorber System (LMEAS) for an SH-60 Seahawk helicopter
A linear motor as seismic horizontal vibrator
Drijkoningen, G.; Veltman, A.; Hendrix, W.H.A.; Brouwer, J.; Hemstede, A.
2006-01-01
In this paper we propose to use the concept of linear synchronous motors to act as a seismic shear-wave vibratory source. We show that a linear motor, even with a design that is not focussed on application of seismic surveying, gives seismic records that are convincing and comparable with an
Large-Amplitude Long-Wave Instability of a Supersonic Shear Layer
Messiter, A. F.
1995-01-01
For sufficiently high Mach numbers, small disturbances on a supersonic vortex sheet are known to grow in amplitude because of slow nonlinear wave steepening. Under the same external conditions, linear theory predicts slow growth of long-wave disturbances to a thin supersonic shear layer. An asymptotic formulation is given here which adds nonzero shear-layer thickness to the weakly nonlinear formulation for a vortex sheet. Spatial evolution is considered, for a spatially periodic disturbance having amplitude of the same order, in Reynolds number, as the shear-layer thickness. A quasi-equilibrium inviscid nonlinear critical layer is found, with effects of diffusion and slow growth appearing through nonsecularity condition. Other limiting cases are also considered, in an attempt to determine a relationship between the vortex-sheet limit and the long-wave limit for a thin shear layer; there appear to be three special limits, corresponding to disturbances of different amplitudes at different locations along the shear layer.
Estimated strength of shear keys in concrete dams
Energy Technology Data Exchange (ETDEWEB)
Curtis, D.D. [Hatch Energy, Niagara Falls, ON (Canada); Lum, K.K.Y. [BC Hydro, Burnaby, BC (Canada)
2008-07-01
BC Hydro requested that Hatch Energy review the seismic stability of Ruskin Dam which was constructed in 1930 at Hayward Lake in British Columbia. The concrete gravity dam is founded nearly entirely on rock in a narrow valley. The vertical joints between blocks are keyed and grouted. The strength of the shear keys was assessed when a non-linear finite element model found that significant forces were being transferred laterally to the abutments during an earthquake. The lateral transfer of loads to the abutment relies on the strength of the shear keys. The dynamic finite element analysis was used to determine the stability of the dam. A review of the shear strength measurements reported in literature showed that the measurements compared well to those obtained by BC Hydro from cores taken from Ruskin Dam. The cohesive strength obtained using the Griffith failure criteria was also in good agreement with both sets of measurements. A simple ultimate shear strength equation was developed using the Mohr-Coulomb failure criteria to determine combined cohesive and frictional strength of shear keys. Safety factors of 2.0 for static loads and 1.5 for seismic loads were proposed to reduce the ultimate strength to allowable values. It was concluded that given the relatively high shear strength established for the shear keys, the abutment rock or dam/abutment contact will control the amount of load which can arch to the abutments. 8 refs., 4 tabs., 5 figs.
Linear and nonlinear viscous flow in two-dimensional fluids
International Nuclear Information System (INIS)
Gravina, D.; Ciccotti, G.; Holian, B.L.
1995-01-01
We report on molecular dynamics simulations of shear viscosity η of a dense two-dimensional fluid as a function of the shear rate γ. We find an analytic dependence of η on γ, and do not find any evidence whatsoever of divergence in the Green-Kubo (GK) value that would be caused by the well-known long-time tail for the shear-stress autocorrelation function, as predicted by the mode-coupling theory. In accordance with the linear response theory, the GK value of η agrees remarkably well with nonequilibrium values at small shear rates. (c) 1995 The American Physical Society
Klapacz, Joanna; Pottenger, Lynn H; Engelward, Bevin P; Heinen, Christopher D; Johnson, George E; Clewell, Rebecca A; Carmichael, Paul L; Adeleye, Yeyejide; Andersen, Melvin E
2016-01-01
From a risk assessment perspective, DNA-reactive agents are conventionally assumed to have genotoxic risks at all exposure levels, thus applying a linear extrapolation for low-dose responses. New approaches discussed here, including more diverse and sensitive methods for assessing DNA damage and DNA repair, strongly support the existence of measurable regions where genotoxic responses with increasing doses are insignificant relative to control. Model monofunctional alkylating agents have in vitro and in vivo datasets amenable to determination of points of departure (PoDs) for genotoxic effects. A session at the 2013 Society of Toxicology meeting provided an opportunity to survey the progress in understanding the biological basis of empirically-observed PoDs for DNA alkylating agents. Together with the literature published since, this review discusses cellular pathways activated by endogenous and exogenous alkylation DNA damage. Cells have evolved conserved processes that monitor and counteract a spontaneous steady-state level of DNA damage. The ubiquitous network of DNA repair pathways serves as the first line of defense for clearing of the DNA damage and preventing mutation. Other biological pathways discussed here that are activated by genotoxic stress include post-translational activation of cell cycle networks and transcriptional networks for apoptosis/cell death. The interactions of various DNA repair and DNA damage response pathways provide biological bases for the observed PoD behaviors seen with genotoxic compounds. Thus, after formation of DNA adducts, the activation of cellular pathways can lead to the avoidance of a mutagenic outcome. The understanding of the cellular mechanisms acting within the low-dose region will serve to better characterize risks from exposures to DNA-reactive agents at environmentally-relevant concentrations. Copyright © 2015 Elsevier B.V. All rights reserved.
Directory of Open Access Journals (Sweden)
Rômulo F. Navarro
2002-01-01
Full Text Available A dilatância é um comportamento reológico comum a vários sistemas poliméricos embora não ocorra em polímeros puros. Existem várias teorias aplicáveis à explicação desse fenômeno e alguns modelos matemáticos para o ajuste de dados experimentais de quatro de suas seis formas de ocorrência. Neste trabalho é dado enfoque à dilatância antecedida por um comportamento newtoniano e sucedida pelo comportamento pseudoplástico. Para ajustar dados constantes da literatura para sistemas desse tipo, é apresentado um modelo híbrido e não-linear. Para o teste do modelo foram utilizados dados existentes na literatura para solução de alfa,ômega poli(t-butilestireno em óleo mineral e suspensão de partículas do copolímero de estireno com acrilato de metila em solução aquosa de poli(ácido acrílico. O modelo proposto apresenta boa concordância com os dados experimentais.Shear-thickening (dilatant behavior is common in several polymeric systems, but not in pure polymers. There are many theories that can be used to describe shear-thickening and some mathematical models that fit experimental data of three of its six types: dilatant, newtonian-dilatant, newtonian-dilatant-pseudoplastic, viscoplastic-dilatant, pseudoplastic-dilatant and newtonian-pseudoplastic-newtonian-dilatant sequences. This work deals with the behavior of newtonian-dilatant-pseudoplastic sequence behavior and proposes a hybrid, non-linear and viscous model to fit the experimental data from systems that present such rheological behavior. The systems under investigation were: a solution of alpha,omega poly(t-butylstyrene in a mineral oil (3g/dl (sample 1 and b suspension of styrene -- methyl acrylate copolymer (S-co-MA particles (15% vol. in a poly(acrylic acid (PAA (1% wt and water solution (sample 2. The proposed model agrees with the experimental data analysed.
Nonlinear dynamics and anisotropic structure of rotating sheared turbulence.
Salhi, A; Jacobitz, F G; Schneider, K; Cambon, C
2014-01-01
Homogeneous turbulence in rotating shear flows is studied by means of pseudospectral direct numerical simulation and analytical spectral linear theory (SLT). The ratio of the Coriolis parameter to shear rate is varied over a wide range by changing the rotation strength, while a constant moderate shear rate is used to enable significant contributions to the nonlinear interscale energy transfer and to the nonlinear intercomponental redistribution terms. In the destabilized and neutral cases, in the sense of kinetic energy evolution, nonlinearity cannot saturate the growth of the largest scales. It permits the smallest scale to stabilize by a scale-by-scale quasibalance between the nonlinear energy transfer and the dissipation spectrum. In the stabilized cases, the role of rotation is mainly nonlinear, and interacting inertial waves can affect almost all scales as in purely rotating flows. In order to isolate the nonlinear effect of rotation, the two-dimensional manifold with vanishing spanwise wave number is revisited and both two-component spectra and single-point two-dimensional energy components exhibit an important effect of rotation, whereas the SLT as well as the purely two-dimensional nonlinear analysis are unaffected by rotation as stated by the Proudman theorem. The other two-dimensional manifold with vanishing streamwise wave number is analyzed with similar tools because it is essential for any shear flow. Finally, the spectral approach is used to disentangle, in an analytical way, the linear and nonlinear terms in the dynamical equations.
Another look at zonal flows: Resonance, shearing, and frictionless saturation
Li, J. C.; Diamond, P. H.
2018-04-01
We show that shear is not the exclusive parameter that represents all aspects of flow structure effects on turbulence. Rather, wave-flow resonance enters turbulence regulation, both linearly and nonlinearly. Resonance suppresses the linear instability by wave absorption. Flow shear can weaken the resonance, and thus destabilize drift waves, in contrast to the near-universal conventional shear suppression paradigm. Furthermore, consideration of wave-flow resonance resolves the long-standing problem of how zonal flows (ZFs) saturate in the limit of weak or zero frictional drag, and also determines the ZF scale. We show that resonant vorticity mixing, which conserves potential enstrophy, enables ZF saturation in the absence of drag, and so is effective at regulating the Dimits up-shift regime. Vorticity mixing is incorporated as a nonlinear, self-regulation effect in an extended 0D predator-prey model of drift-ZF turbulence. This analysis determines the saturated ZF shear and shows that the mesoscopic ZF width scales as LZ F˜f3 /16(1-f ) 1 /8ρs5/8l03 /8 in the (relevant) adiabatic limit (i.e., τckk‖2D‖≫1 ). f is the fraction of turbulence energy coupled to ZF and l0 is the base state mixing length, absent ZF shears. We calculate and compare the stationary flow and turbulence level in frictionless, weakly frictional, and strongly frictional regimes. In the frictionless limit, the results differ significantly from conventionally quoted scalings derived for frictional regimes. To leading order, the flow is independent of turbulence intensity. The turbulence level scales as E ˜(γL/εc) 2 , which indicates the extent of the "near-marginal" regime to be γLcase of avalanche-induced profile variability. Here, εc is the rate of dissipation of potential enstrophy and γL is the characteristic linear growth rate of fluctuations. The implications for dynamics near marginality of the strong scaling of saturated E with γL are discussed.
Pinho, Silvestre T.; Davila, C. G.; Camanho, P. P.; Iannucci, L.; Robinson, P.
2005-01-01
A set of three-dimensional failure criteria for laminated fiber-reinforced composites, denoted LaRC04, is proposed. The criteria are based on physical models for each failure mode and take into consideration non-linear matrix shear behaviour. The model for matrix compressive failure is based on the Mohr-Coulomb criterion and it predicts the fracture angle. Fiber kinking is triggered by an initial fiber misalignment angle and by the rotation of the fibers during compressive loading. The plane of fiber kinking is predicted by the model. LaRC04 consists of 6 expressions that can be used directly for design purposes. Several applications involving a broad range of load combinations are presented and compared to experimental data and other existing criteria. Predictions using LaRC04 correlate well with the experimental data, arguably better than most existing criteria. The good correlation seems to be attributable to the physical soundness of the underlying failure models.
Directory of Open Access Journals (Sweden)
Arul Arulrajah
2015-01-01
Full Text Available The interface shear strength properties of geogrid reinforced recycled foamed glass (FG were determined using a large-scale direct shear test (DST apparatus. Triaxial geogrid was used as a geogrid reinforcement. The geogrid increases the confinement of FG particles during shear; consequently the geogrid reinforced FG exhibits smaller vertical displacement and dilatancy ratio than FG at the same normal stress. The failure envelope of geogrid reinforced FG, at peak and critical states, coincides and yields a unique linear line possibly attributed to the crushing of FG particles and the rearrangement of crushed FG after peak shear state. The interface shear strength coefficient α is approximately constant at 0.9. This value can be used as the interface parameter for designing a reinforced embankment and mechanically stabilized earth (MSE wall when FG is used as a lightweight backfill and triaxial geogrid is used as an extensible earth reinforcement. This research will enable FG, recently assessed as suitable for lightweight backfills, to be used together with geogrids in a sustainable manner as a lightweight MSE wall. The geogrid carries tensile forces, while FG reduces bearing stresses imposed on the in situ soil. The use of geogrid reinforced FG is thus significant from engineering, economical, and environmental perspectives.
How shear increments affect the flow production branching ratio in CSDX
Li, J. C.; Diamond, P. H.
2018-06-01
The coupling of turbulence-driven azimuthal and axial flows in a linear device absent magnetic shear (Controlled Shear Decorrelation Experiment) is investigated. In particular, we examine the apportionment of Reynolds power between azimuthal and axial flows, and how the azimuthal flow shear affects axial flow generation and saturation by drift wave turbulence. We study the response of the energy branching ratio, i.e., ratio of axial and azimuthal Reynolds powers, PzR/PyR , to incremental changes of azimuthal and axial flow shears. We show that increasing azimuthal flow shear decreases the energy branching ratio. When axial flow shear increases, this ratio first increases but then decreases to zero. The axial flow shear saturates below the threshold for parallel shear flow instability. The effects of azimuthal flow shear on the generation and saturation of intrinsic axial flows are analyzed. Azimuthal flow shear slows down the modulational growth of the seed axial flow shear, and thus reduces intrinsic axial flow production. Azimuthal flow shear reduces both the residual Reynolds stress (of axial flow, i.e., ΠxzR e s ) and turbulent viscosity ( χzDW ) by the same factor |⟨vy⟩'|-2Δx-2Ln-2ρs2cs2 , where Δx is the distance relative to the reference point where ⟨vy⟩=0 in the plasma frame. Therefore, the stationary state axial flow shear is not affected by azimuthal flow shear to leading order since ⟨vz⟩'˜ΠxzR e s/χzDW .
Cosmic Shear With ACS Pure Parallels
Rhodes, Jason
2002-07-01
Small distortions in the shapes of background galaxies by foreground mass provide a powerful method of directly measuring the amount and distribution of dark matter. Several groups have recently detected this weak lensing by large-scale structure, also called cosmic shear. The high resolution and sensitivity of HST/ACS provide a unique opportunity to measure cosmic shear accurately on small scales. Using 260 parallel orbits in Sloan textiti {F775W} we will measure for the first time: beginlistosetlength sep0cm setlengthemsep0cm setlengthopsep0cm em the cosmic shear variance on scales Omega_m^0.5, with signal-to-noise {s/n} 20, and the mass density Omega_m with s/n=4. They will be done at small angular scales where non-linear effects dominate the power spectrum, providing a test of the gravitational instability paradigm for structure formation. Measurements on these scales are not possible from the ground, because of the systematic effects induced by PSF smearing from seeing. Having many independent lines of sight reduces the uncertainty due to cosmic variance, making parallel observations ideal.
Vu, Cung Khac; Skelt, Christopher; Nihei, Kurt; Johnson, Paul A.; Guyer, Robert; Ten Cate, James A.; Le Bas, Pierre-Yves; Larmat, Carene S.
2015-06-02
A system and a method for generating a three-dimensional image of a rock formation, compressional velocity VP, shear velocity VS and velocity ratio VP/VS of a rock formation are provided. A first acoustic signal includes a first plurality of pulses. A second acoustic signal from a second source includes a second plurality of pulses. A detected signal returning to the borehole includes a signal generated by a non-linear mixing process from the first and second acoustic signals in a non-linear mixing zone within an intersection volume. The received signal is processed to extract the signal over noise and/or signals resulting from linear interaction and the three dimensional image of is generated.
Ponomarev, A. L.; Brenner, D.; Hlatky, L. R.; Sachs, R. K.
2000-01-01
DNA double-strand breaks (DSBs) produced by densely ionizing radiation are not located randomly in the genome: recent data indicate DSB clustering along chromosomes. Stochastic DSB clustering at large scales, from > 100 Mbp down to simulations and analytic equations. A random-walk, coarse-grained polymer model for chromatin is combined with a simple track structure model in Monte Carlo software called DNAbreak and is applied to data on alpha-particle irradiation of V-79 cells. The chromatin model neglects molecular details but systematically incorporates an increase in average spatial separation between two DNA loci as the number of base-pairs between the loci increases. Fragment-size distributions obtained using DNAbreak match data on large fragments about as well as distributions previously obtained with a less mechanistic approach. Dose-response relations, linear at small doses of high linear energy transfer (LET) radiation, are obtained. They are found to be non-linear when the dose becomes so large that there is a significant probability of overlapping or close juxtaposition, along one chromosome, for different DSB clusters from different tracks. The non-linearity is more evident for large fragments than for small. The DNAbreak results furnish an example of the RLC (randomly located clusters) analytic formalism, which generalizes the broken-stick fragment-size distribution of the random-breakage model that is often applied to low-LET data.
Pinney, Rhiannon; Liverpool, Tanniemola B; Royall, C Patrick
2016-12-21
We consider a binary Lennard-Jones glassformer whose super-Arrhenius dynamics are correlated with the formation of particles organized into icosahedra under simple steady state shear. We recast this glassformer as an effective system of icosahedra [Pinney et al., J. Chem. Phys. 143, 244507 (2015)]. From the observed population of icosahedra in each steady state, we obtain an effective temperature which is linearly dependent on the shear rate in the range considered. Upon shear banding, the system separates into a region of high shear rate and a region of low shear rate. The effective temperatures obtained in each case show that the low shear regions correspond to a significantly lower temperature than the high shear regions. Taking a weighted average of the effective temperature of these regions (weight determined by region size) yields an estimate of the effective temperature which compares well with an effective temperature based on the global mesocluster population of the whole system.
Shear flow simulations of biaxial nematic liquid crystals
Sarman, Sten
1997-08-01
We have calculated the viscosities of a biaxial nematic liquid crystal phase of a variant of the Gay-Berne fluid [J. G. Gay and B. J. Berne, J. Chem. Phys. 74, 3316 (1981)] by performing molecular dynamics simulations. The equations of motion have been augmented by a director constraint torque that fixes the orientation of the directors. This makes it possible to fix them at different angles relative to the stream lines in shear flow simulations. In equilibrium simulations the constraints generate a new ensemble. One finds that the Green-Kubo relations for the viscosities become linear combinations of time correlation function integrals in this ensemble whereas they are complicated rational functions in the conventional canonical ensemble. We have evaluated these Green-Kubo relations for all the shear viscosities and all the twist viscosities. We have also calculated the alignment angles, which are functions of the viscosity coefficients. We find that there are three real alignment angles but a linear stability analysis shows that only one of them corresponds to a stable director orientation. The Green-Kubo results have been cross checked by nonequilibrium shear flow simulations. The results from the different methods agree very well. Finally, we have evaluated the Miesowicz viscosities [D. Baalss, Z. Naturforsch. Teil A 45, 7 (1990)]. They vary by more than 2 orders of magnitude. The viscosity is consequently highly orientation dependent.
Lundberg, Micah; Krishan, Kapilanjan; Xu, Ning; O'Hern, Corey S; Dennin, Michael
2009-04-01
A fundamental difference between fluids and solids is their response to applied shear. Solids possess static shear moduli, while fluids do not. Complex fluids such as foams display an intermediate response to shear with nontrivial frequency-dependent shear moduli. In this paper, we conduct coordinated experiments and numerical simulations of model foams subjected to boundary-driven oscillatory planar shear. Our studies are performed on bubble rafts (experiments) and the bubble model (simulations) in two dimensions. We focus on the low-amplitude flow regime in which T1 events, i.e., bubble rearrangement events where originally touching bubbles switch nearest neighbors, do not occur, yet the system transitions from solid- to liquidlike behavior as the driving frequency is increased. In both simulations and experiments, we observe two distinct flow regimes. At low frequencies omega, the velocity profile of the bubbles increases linearly with distance from the stationary wall, and there is a nonzero total phase shift between the moving boundary and interior bubbles. In this frequency regime, the total phase shift scales as a power law Delta approximately omegan with n approximately 3. In contrast, for frequencies above a crossover frequency omega>omegap, the total phase shift Delta scales linearly with the driving frequency. At even higher frequencies above a characteristic frequency omeganl>omegap, the velocity profile changes from linear to nonlinear. We fully characterize this transition from solid- to liquidlike flow behavior in both the simulations and experiments and find qualitative and quantitative agreements for the characteristic frequencies.
Development of a shear force measurement dummy for seat comfort.
Kim, Seong Guk; Ko, Chang-Yong; Kim, Dong Hyun; Song, Ye Eun; Kang, Tae Uk; Ahn, Sungwoo; Lim, Dohyung; Kim, Han Sung
2017-01-01
Seat comfort is one of the main factors that consumers consider when purchasing a car. In this study, we develop a dummy with a shear-force sensor to evaluate seat comfort. The sensor has dimensions of 25 mm × 25 mm × 26 mm and is made of S45C. Electroless nickel plating is employed to coat its surface in order to prevent corrosion and oxidation. The proposed sensor is validated using a qualified load cell and shows high accuracy and precision (measurement range: -30-30 N; sensitivity: 0.1 N; linear relationship: R = 0.999; transverse sensitivity: <1%). The dummy is manufactured in compliance with the SAE standards (SAE J826) and incorporates shear sensors into its design. We measure the shear force under four driving conditions and at five different speeds using a sedan; results showed that the shear force increases with speed under all driving conditions. In the case of acceleration and deceleration, shear force significantly changes in the lower body of the dummy. During right and left turns, it significantly changes in the upper body of the dummy.
Snijkers, F.; Kirkwood, K. M.; Vlassopoulos, D.; Leal, L. G.; Nikopoulou, A.; Hadjichristidis, Nikolaos; Coppola, S.
2016-01-01
We report upon the characterization of the steady-state shear stresses and first normal stress differences as a function of shear rate using mechanical rheometry (both with a standard cone and plate and with a cone partitioned plate) and optical rheometry (with a flow-birefringence setup) of an entangled solution of asymmetric exact combs. The combs are polybutadienes (1,4-addition) consisting of an H-skeleton with an additional off-center branch on the backbone. We chose to investigate a solution in order to obtain reliable nonlinear shear data in overlapping dynamic regions with the two different techniques. The transient measurements obtained by cone partitioned plate indicated the appearance of overshoots in both the shear stress and the first normal stress difference during start-up shear flow. Interestingly, the overshoots in the start-up normal stress difference started to occur only at rates above the inverse stretch time of the backbone, when the stretch time of the backbone was estimated in analogy with linear chains including the effects of dynamic dilution of the branches but neglecting the effects of branch point friction, in excellent agreement with the situation for linear polymers. Flow-birefringence measurements were performed in a Couette geometry, and the extracted steady-state shear and first normal stress differences were found to agree well with the mechanical data, but were limited to relatively low rates below the inverse stretch time of the backbone. Finally, the steady-state properties were found to be in good agreement with model predictions based on a nonlinear multimode tube model developed for linear polymers when the branches are treated as solvent.
Snijkers, F.
2016-03-31
We report upon the characterization of the steady-state shear stresses and first normal stress differences as a function of shear rate using mechanical rheometry (both with a standard cone and plate and with a cone partitioned plate) and optical rheometry (with a flow-birefringence setup) of an entangled solution of asymmetric exact combs. The combs are polybutadienes (1,4-addition) consisting of an H-skeleton with an additional off-center branch on the backbone. We chose to investigate a solution in order to obtain reliable nonlinear shear data in overlapping dynamic regions with the two different techniques. The transient measurements obtained by cone partitioned plate indicated the appearance of overshoots in both the shear stress and the first normal stress difference during start-up shear flow. Interestingly, the overshoots in the start-up normal stress difference started to occur only at rates above the inverse stretch time of the backbone, when the stretch time of the backbone was estimated in analogy with linear chains including the effects of dynamic dilution of the branches but neglecting the effects of branch point friction, in excellent agreement with the situation for linear polymers. Flow-birefringence measurements were performed in a Couette geometry, and the extracted steady-state shear and first normal stress differences were found to agree well with the mechanical data, but were limited to relatively low rates below the inverse stretch time of the backbone. Finally, the steady-state properties were found to be in good agreement with model predictions based on a nonlinear multimode tube model developed for linear polymers when the branches are treated as solvent.
High efficiency hydrodynamic DNA fragmentation in a bubbling system
Li, Lanhui; Jin, Mingliang; Sun, Chenglong; Wang, Xiaoxue; Xie, Shuting; Zhou, Guofu; Van Den Berg, Albert; Eijkel, Jan C.T.; Shui, Lingling
2017-01-01
DNA fragmentation down to a precise fragment size is important for biomedical applications, disease determination, gene therapy and shotgun sequencing. In this work, a cheap, easy to operate and high efficiency DNA fragmentation method is demonstrated based on hydrodynamic shearing in a bubbling
Prediction of stably stratified homogeneous shear flows with second-order turbulence models
International Nuclear Information System (INIS)
Pereira, J C F; Rocha, J M P
2010-01-01
The present study investigated the role of pressure-correlation second-order turbulence modelling schemes on the predicted behaviour of stably stratified homogeneous vertical-sheared turbulence. The pressure-correlation terms were modelled with a nonlinear formulation (Craft 1991), which was compared with a linear pressure-strain model and the 'isotropization of production' model for the pressure-scalar correlation. Two additional modelling issues were investigated: the influence of the buoyancy term in the kinetic energy dissipation rate equation and the time scale in the thermal production term in the scalar variance dissipation equation. The predicted effects of increasing the Richardson number on turbulence characteristics were compared against a comprehensive set of direct numerical simulation databases. The linear models provide a broadly satisfactory description of the major effects of the Richardson number on stratified shear flow. The buoyancy term in the dissipation equation of the turbulent kinetic energy generates excessively low levels of dissipation. For moderate and large Richardson numbers, the term yields unrealistic linear oscillations in the shear and buoyancy production terms, and therefore should be dropped in this flow (or at least their coefficient c ε3 should be substantially reduced from its standard value). The mechanical dissipation time scale provides marginal improvements in comparison to the scalar time scale in the production. The observed inaccuracy of the linear model in predicting the magnitude of the effects on the velocity anisotropy was demonstrated to be attributed mainly to the defective behaviour of the pressure-correlation model, especially for stronger stratification. The turbulence closure embodying a nonlinear formulation for the pressure-correlations and specific versions of the dissipation equations failed to predict the tendency of the flow to anisotropy with increasing stratification. By isolating the effects of the
Effect of magnetic shear on dissipative drift instabilities
International Nuclear Information System (INIS)
Guzdar, P.N.; Chen, L.; Kaw, P.K.; Oberman, C.
1978-03-01
In this letter we report the results of a linear radial eigenmode analysis of dissipative drift waves in a plasma with magnetic shear and spatially varying density gradient. The results of the analysis are shown to be consistent with a recent experiment on the study of dissipative drift instabilities in a toroidal stellarator
Development of in-situ rock shear test under low compressive to tensile normal stress
International Nuclear Information System (INIS)
Nozaki, Takashi; Shin, Koichi
2003-01-01
The purpose of this study is to develop an in-situ rock shear testing method to evaluate the shear strength under low normal stress condition including tensile stress, which is usually ignored in the assessment of safety factor of the foundations for nuclear power plants against sliding. The results are as follows. (1) A new in-situ rock shear testing method is devised, in which tensile normal stress can be applied on the shear plane of a specimen by directly pulling up a steel box bonded to the specimen. By applying the counter shear load to cancel the moment induced by the main shear load, it can obtain shear strength under low normal stress. (2) Some model tests on Oya tuff and diatomaceous mudstone have been performed using the developed test method. The shear strength changed smoothly from low values at tensile normal stresses to higher values at compressive normal stresses. The failure criterion has been found to be bi-linear on the shear stress vs normal stress plane. (author)
Hard wall - soft wall - vorticity scattering in shear flow
Rienstra, S.W.; Singh, D.K.
2014-01-01
An analytically exact solution, for the problem of lowMach number incident vorticity scattering at a hard-soft wall transition, is obtained in the form of Fourier integrals by using theWiener-Hopf method. Harmonic vortical perturbations of inviscid linear shear flow are scattered at the wall
Hard wall - soft wall - vorticity scattering in shear flow
Rienstra, S.W.; Singh, D.K.
2014-01-01
An analytically exact solution, for the problem of low Mach number incident vorticity scattering at a hard-soft wall transition, is obtained in the form of Fourier integrals by using the Wiener-Hopf method. Harmonic vortical perturbations of inviscid linear shear flow are scattered at the wall
Hu, Wei; Xu, Qiang; Wang, Gonghui; Scaringi, Gianvito; Mcsaveney, Mauri; Hicher, Pierre-Yves
2017-11-01
We present results of ring shear frictional resistance for mudstone granules of different size obtained from a landslide shear zone. Little rate dependency of shear resistance was observed in sand-sized granules in any wet or dry test, while saturated gravel-sized granules exhibited significant and abrupt reversible rate-weakening (from μ = 0.6 to 0.05) at about 2 mm/s. Repeating resistance variations occurred also under constant shear displacement rate. Mudstone granules generate mud as they are crushed and softened. Shear-thinning and thixotropic behavior of the mud can explain the observed behavior: with the viscosity decreasing, the mud can flow through the coarser soil pores and migrate out from the shear zone. This brings new granules into contact which produces new mud. Thus, the process can start over. Similarities between experimental shear zones and those of some landslides in mudstone suggest that the observed behavior may play a role in some landslide kinematics.
Notes on hyperscaling violating Lifshitz and shear diffusion
Kolekar, Kedar S.; Mukherjee, Debangshu; Narayan, K.
2017-07-01
We explore in greater detail our investigations of shear diffusion in hyperscaling violating Lifshitz theories in Phys. Lett. B 760, 86 (2016), 10.1016/j.physletb.2016.06.046. This adapts and generalizes the membrane-paradigm-like analysis of Kovtun, Son, and Starinets for shear gravitational perturbations in the near horizon region given certain self-consistent approximations, leading to the shear diffusion constant on an appropriately defined stretched horizon. In theories containing a gauge field, some of the metric perturbations mix with some of the gauge field perturbations and the above analysis is somewhat more complicated. We find a similar near-horizon analysis can be obtained in terms of new field variables involving a linear combination of the metric and the gauge field perturbation resulting in a corresponding diffusion equation. Thereby as before, for theories with Lifshitz and hyperscaling violating exponents z , θ satisfying z <4 -θ in four bulk dimensions, our analysis here results in a similar expression for the shear diffusion constant with power-law scaling with temperature suggesting universal behavior in relation to the viscosity bound. For z =4 -θ , we find logarithmic behavior.
An efficient formulation for linear and geometric non-linear membrane elements
Directory of Open Access Journals (Sweden)
Mohammad Rezaiee-Pajand
Full Text Available Utilizing the straingradient notation process and the free formulation, an efficient way of constructing membrane elements will be proposed. This strategy can be utilized for linear and geometric non-linear problems. In the suggested formulation, the optimization constraints of insensitivity to distortion, rotational invariance and not having parasitic shear error are employed. In addition, the equilibrium equations will be established based on some constraints among the strain states. The authors' technique can easily separate the rigid body motions, and those belong to deformational motions. In this article, a novel triangular element, named SST10, is formulated. This element will be used in several plane problems having irregular mesh and complicated geometry with linear and geometrically nonlinear behavior. The numerical outcomes clearly demonstrate the efficiency of the new formulation.
Fourier band-power E/B-mode estimators for cosmic shear
Energy Technology Data Exchange (ETDEWEB)
Becker, Matthew R.; Rozo, Eduardo
2016-01-20
We introduce new Fourier band-power estimators for cosmic shear data analysis and E/B-mode separation. We consider both the case where one performs E/B-mode separation and the case where one does not. The resulting estimators have several nice properties which make them ideal for cosmic shear data analysis. First, they can be written as linear combinations of the binned cosmic shear correlation functions. Secondly, they account for the survey window function in real-space. Thirdly, they are unbiased by shape noise since they do not use correlation function data at zero separation. Fourthly, the band-power window functions in Fourier space are compact and largely non-oscillatory. Fifthly, they can be used to construct band-power estimators with very efficient data compression properties. In particular, we find that all of the information on the parameters Ωm, σ8 and ns in the shear correlation functions in the range of ~10–400 arcmin for single tomographic bin can be compressed into only three band-power estimates. Finally, we can achieve these rates of data compression while excluding small-scale information where the modelling of the shear correlation functions and power spectra is very difficult. Given these desirable properties, these estimators will be very useful for cosmic shear data analysis.
International Nuclear Information System (INIS)
Mohanty, S.; Manteufel, R.D.; Chowdhury, A.H.
1995-01-01
The change in fracture permeability under mechanical loads have been investigated. An apparatus has been developed to measure change in fracture permeability, when a single fracture is subjected to normal and shear stress. Both radial and linear flow experiments have been conducted by modifying a direct shear test apparatus. Preliminary results suggest a 35-percent change in fracture permeability under normal stress to 8 MPa and nearly 350 percent under shear displacement of 9.9254 m (1 in.) at 5 MPa normal stress. Effort is underway to separate the permeability change due to gouge material production from that of due to dilation
Zhang, B.
2016-12-01
Large-scale lateral strike-slip shear zones have been a key point in the debate about the deformation mechanisms of Asia in response to the India-Asia collision. The exhumed gneiss has been attributed to lateral strike-slip shear zone. This hypothesis has been challenged by recent discoveries indicating that a contractional doming deformation prior to the initiation of lateral strike-slip shearing. The Cenozoic Xuelong Shan antiformal dome is located at the northern segment of the Ailao Shan-Red River shear zone. Subhorizontal foliation in the gneiss core are recognized, representing a broad top-to-NE shear initiated under amphibolite facies conditions and propagated into greenschist facies in the mantling schist and strike-slip shear zone. Quartz CPOs and opening angles of crossed girdle fabrics in quartz suggest that the deformation temperatures increased with increasing structural depth from 300-500 °C in the mantling schist to ≥650 °C in the gneissic core. This trend is mirrored by variations in the metamorphic grade of the syn-kinematic mineral assemblages and microstructures, which ranges from garnet + amphibole + biotite + sillimanite + rutite + feldspar in the core to garnet + staurolite + biotite + epidote + muscovite within the limb units. Five-stage deformation is identified: (1) a broad top-to-NE shear in the subhorizontal level (D1); (2) opposing reverse-sense shear along the two schist limbs of the dome during contraction-related doming (D2-D3); (3) sinistral strike-slip shearing within the eastern limb (D4); and (4) extensional deformation (D5). The antiformal dome formation had been roughly coeval with top-to-NE ductile shearing in the mid-crust at 32 Ma or earlier. The geometries of the antiformal dome in the Xuelong Shan dome are similar to those associated with the antiform in the Dai Nui Con Voi, Diancang Shan and Ailao Shan zones. It is likely that the complex massifs, which define a regional linear gneiss dome zone in Cenozoic intra
DEFF Research Database (Denmark)
Kristiansen, Martin; Kryger, Mille; Zhang, Zhao
2012-01-01
A dynamic linear DNA tile actuator is expanded to three new structures of higher complexity. The original DNA actuator was constructed from a central roller strand which hybridizes with two piston strands by forming two half-crossover junctions. A linear expansion of the actuator is obtained...
International Nuclear Information System (INIS)
Eckl, P.
1981-01-01
This study was initiated to investigate, whether there are any radiation-induced changes in DNA-content and if these changes can be repaired. Seeds of Vicia faba L. were grown in glass culture vessels. After 10 to 20 days the seedings were irradiated using a 1 C1 60 Co gammasource (90mrad/h and 33 rad/h) and a 5 mCi 252 Cf neutronsource (90 mrad/h). Both, neutron and gamma irradiation cause a reduction in nuclear DNA-content even after low doses (1 to 10 rad). The extent of depression is only depending on linear energy transfer. Parallel to the induced minimum in DNA-content, but shifted to higher doses, also the mitotic activity reaches a minimum. Whereas neutron irradiation results in a total stop after doses of 8 rad, gamma-irradiation only induces a depression of 80 %. Whith higher doses the mitotic activity increases again. The neutron-induced changes in DNA-content seem to be restored within 90 minutes after irradiation. No continuous increase could be found after low gamma-doses. Gamma-irradiation with higher dose rates ( 60 Co, 33 rad/h) causes a general decrease over the dose-range studied (100 to 1600 rad). Following doses of 100 rad the mitotic activity increases significantly. With higher doses the decrease is exponential. A dose-dependent mitotic delay could also be observed. As described by many authors, unscheduled DNA-synthesis (UDS) could not be detected in nuclei of Vicia faba. This indicates that an other system, perhaps acting in situ - at the damaged place - is responsible for the repair of radiation-induced thymine-damages. (Author)
Hydrodynamic interaction of two particles in confined linear shear flow at finite Reynolds number
Yan, Yiguang; Morris, Jeffrey F.; Koplik, Joel
2007-11-01
We discuss the hydrodynamic interactions of two solid bodies placed in linear shear flow between parallel plane walls in a periodic geometry at finite Reynolds number. The computations are based on the lattice Boltzmann method for particulate flow, validated here by comparison to previous results for a single particle. Most of our results pertain to cylinders in two dimensions but some examples are given for spheres in three dimensions. Either one mobile and one fixed particle or else two mobile particles are studied. The motion of a mobile particle is qualitatively similar in both cases at early times, exhibiting either trajectory reversal or bypass, depending upon the initial vector separation of the pair. At longer times, if a mobile particle does not approach a periodic image of the second, its trajectory tends to a stable limit point on the symmetry axis. The effect of interactions with periodic images is to produce nonconstant asymptotic long-time trajectories. For one free particle interacting with a fixed second particle within the unit cell, the free particle may either move to a fixed point or take up a limit cycle. Pairs of mobile particles starting from symmetric initial conditions are shown to asymptotically reach either fixed points, or mirror image limit cycles within the unit cell, or to bypass one another (and periodic images) indefinitely on a streamwise periodic trajectory. The limit cycle possibility requires finite Reynolds number and arises as a consequence of streamwise periodicity when the system length is sufficiently short.
Development of a shear force measurement dummy for seat comfort.
Directory of Open Access Journals (Sweden)
Seong Guk Kim
Full Text Available Seat comfort is one of the main factors that consumers consider when purchasing a car. In this study, we develop a dummy with a shear-force sensor to evaluate seat comfort. The sensor has dimensions of 25 mm × 25 mm × 26 mm and is made of S45C. Electroless nickel plating is employed to coat its surface in order to prevent corrosion and oxidation. The proposed sensor is validated using a qualified load cell and shows high accuracy and precision (measurement range: -30-30 N; sensitivity: 0.1 N; linear relationship: R = 0.999; transverse sensitivity: <1%. The dummy is manufactured in compliance with the SAE standards (SAE J826 and incorporates shear sensors into its design. We measure the shear force under four driving conditions and at five different speeds using a sedan; results showed that the shear force increases with speed under all driving conditions. In the case of acceleration and deceleration, shear force significantly changes in the lower body of the dummy. During right and left turns, it significantly changes in the upper body of the dummy.
Study on shear properties of coral sand under cyclic simple shear condition
Ji, Wendong; Zhang, Yuting; Jin, Yafei
2018-05-01
In recent years, the ocean development in our country urgently needs to be accelerated. The construction of artificial coral reefs has become an important development direction. In this paper, experimental studies of simple shear and cyclic simple shear of coral sand are carried out, and the shear properties and particle breakage of coral sand are analyzed. The results show that the coral sand samples show an overall shear failure in the simple shear test, which is more accurate and effective for studying the particle breakage. The shear displacement corresponding to the peak shear stress of the simple shear test is significantly larger than that corresponding to the peak shear stress of the direct shear test. The degree of particle breakage caused by the simple shear test is significantly related to the normal stress level. The particle breakage of coral sand after the cyclic simple shear test obviously increases compared with that of the simple shear test, and universal particle breakage occurs within the whole particle size range. The increasing of the cycle-index under cyclic simple shear test results in continuous compacting of the sample, so that the envelope curve of peak shearing force increases with the accumulated shear displacement.
Shear strength of non-shear reinforced concrete elements
DEFF Research Database (Denmark)
Hoang, Cao linh
1997-01-01
The paper deals with the plastic shear strength of non shear reinforced T-beams.The influence of an un-reinforced flange on the shear capacity is investigated by considering a failure mechanism involving crack sliding in the web and a kind of membrane action over an effective width of the flange...
Cargo Release from Polymeric Vesicles under Shear
Directory of Open Access Journals (Sweden)
Yingying Guo
2018-03-01
Full Text Available In this paper we study the release of cargo from polymeric nano-carriers under shear. Vesicles formed by two star block polymers— A 12 B 6 C 2 ( A B C and A 12 B 6 A 2 ( A B A —and one linear block copolymer— A 14 B 6 ( A B , are investigated using dissipative particle dynamics (DPD simulations. A - and C -blocks are solvophobic and B -block is solvophilic. The three polymers form vesicles of different structures. The vesicles are subjected to shear both in bulk and between solvophobic walls. In bulk shear, the mechanisms of cargo release are similar for all vesicles, with cargo travelling through vesicle membrane with no preferential release location. When sheared between walls, high cargo release rate is only observed with A B C vesicle after it touches the wall. For A B C vesicle, the critical condition for high cargo release rate is the formation of wall-polymersome interface after which the effect of shear rate in promoting cargo release is secondary. High release rate is achieved by the formation of solvophilic pathway allowing cargo to travel from the vesicle cavity to the vesicle exterior. The results in this paper show that well controlled target cargo release using polymersomes can be achieved with polymers of suitable design and can potentially be very useful for engineering applications. As an example, polymersomes can be used as carriers for surface active friction reducing additives which are only released at rubbing surfaces where the additives are needed most.
Peterson, Jayson Luc
2011-10-01
Observations in the National Spherical Torus Experiment (NSTX) have found electron temperature gradients that greatly exceed the linear threshold for the onset for electron temperature gradient-driven (ETG) turbulence. These discharges, deemed electron internal transport barriers (e-ITBs), coincide with a reversal in the shear of the magnetic field and with a reduction in electron-scale density fluctuations, qualitatively consistent with earlier gyrokinetic predictions. To investigate this phenomenon further, we numerically model electron turbulence in NSTX reversed-shear plasmas using the gyrokinetic turbulence code GYRO. These first-of-a-kind nonlinear gyrokinetic simulations of NSTX e-ITBs confirm that reversing the magnetic shear can allow the plasma to reach electron temperature gradients well beyond the critical gradient for the linear onset of instability. This effect is very strong, with the nonlinear threshold for significant transport approaching three times the linear critical gradient in some cases, in contrast with moderate shear cases, which can drive significant ETG turbulence at much lower gradients. In addition to the experimental implications of this upshifted nonlinear critical gradient, we explore the behavior of ETG turbulence during reversed shear discharges. This work is supported by the SciDAC Center for the Study of Plasma Microturbulence, DOE Contract DE-AC02-09CH11466, and used the resources of NCCS at ORNL and NERSC at LBNL. M. Ono et al., Nucl. Fusion 40, 557 (2000).
Local transport barrier formation and relaxation in reverse-shear plasmas on the TFTR tokamak
International Nuclear Information System (INIS)
Synakowski, E.J.; Beer, M.A.
1997-02-01
The roles of turbulence stabilization by sheared E x B flow and Shafranov-shift gradients are examined for TFTR. Enhanced Reverse-Shear plasmas. Both effects in combination provide the basis of a positive-feedback model that predicts reinforced turbulence suppression with increasing pressure gradient. Local fluctuation behavior at the onset of ERS confinement is consistent with this framework. The power required for transitions into the ERS regime are lower when high power neutral beams are applied earlier in the current profile evolution, consistent with the suggestion that both effects play a role. Separation of the roles of E x B and Shafranov shift effects was performed by varying the E x B shear through changes in the toroidal velocity with nearly-steady-state pressure profiles. Transport and fluctuation levels increase only when E x B shearing rates are driven below a critical value that is comparable to the fastest linear growth rates of the dominant instabilities. While a turbulence suppression criterion that involves the ratio of shearing to linear growth rates is in accord with many of these results, the existence of hidden dependencies of the criterion is suggested in experiments where the toroidal field was varied. The forward transition into the ERS regime has also been examined in strongly rotating plasmas. The power threshold is higher with unidirectional injection than with balanced injection
Energy Consumption Related to Shear Stress for Membrane Bioreactors Used for Wastewater Treatment
DEFF Research Database (Denmark)
Ratkovich, Nicolas Rios; Bentzen, Thomas Ruby; Bérube, P.R.
2011-01-01
. A linear empirical correlation between the average shear stress and the blower power per unit of permeate was made. This work uses an empirical relationship to determine the shear stress based on the ratio of aeration blower power to tank volume. This relationship is used in bubble column reactors...... stress measurements and CFD simulation were made. It was found that the average shear stress over the membrane surface from the CFD model is similar compared to experimental data (error less than 8 %). However, some differences in the distribution of shear stress throughout the submerged MBR system were...... observed. It was found that the CFD and experimental data was similar in terms of shear stress. On the other hand, for the HS MBR experimental measurements were not made. Nevertheless, as a proper validation was attained with the HF MBR, it was inferred that the CFD results for the HS MBR were accurate...
Liu, Richeng; Li, Bo; Jiang, Yujing; Yu, Liyuan
2018-01-01
Hydro-mechanical properties of rock fractures are core issues for many geoscience and geo-engineering practices. Previous experimental and numerical studies have revealed that shear processes could greatly enhance the permeability of single rock fractures, yet the shear effects on hydraulic properties of fractured rock masses have received little attention. In most previous fracture network models, single fractures are typically presumed to be formed by parallel plates and flow is presumed to obey the cubic law. However, related studies have suggested that the parallel plate model cannot realistically represent the surface characters of natural rock fractures, and the relationship between flow rate and pressure drop will no longer be linear at sufficiently large Reynolds numbers. In the present study, a numerical approach was established to assess the effects of shear on the hydraulic properties of 2-D discrete fracture networks (DFNs) in both linear and nonlinear regimes. DFNs considering fracture surface roughness and variation of aperture in space were generated using an originally developed code DFNGEN. Numerical simulations by solving Navier-Stokes equations were performed to simulate the fluid flow through these DFNs. A fracture that cuts through each model was sheared and by varying the shear and normal displacements, effects of shear on equivalent permeability and nonlinear flow characteristics of DFNs were estimated. The results show that the critical condition of quantifying the transition from a linear flow regime to a nonlinear flow regime is: 10-4 〈 J hydraulic gradient. When the fluid flow is in a linear regime (i.e., J reduce the equivalent permeability significantly in the orientation perpendicular to the sheared fracture as much as 53.86% when J = 1, shear displacement Ds = 7 mm, and normal displacement Dn = 1 mm. By fitting the calculated results, the mathematical expression for δ2 is established to help choose proper governing equations when
The linear canonical transformation : definition and properties
Bastiaans, Martin J.; Alieva, Tatiana; Healy, J.J.; Kutay, M.A.; Ozaktas, H.M.; Sheridan, J.T.
2016-01-01
In this chapter we introduce the class of linear canonical transformations, which includes as particular cases the Fourier transformation (and its generalization: the fractional Fourier transformation), the Fresnel transformation, and magnifier, rotation and shearing operations. The basic properties
The distribution of wall shear stress downstream of a change in roughness
International Nuclear Information System (INIS)
Loureiro, J.B.R.; Sousa, F.B.C.C.; Zotin, J.L.Z.; Silva Freire, A.P.
2010-01-01
In the present work, six different experimental techniques are used to characterize the non-equilibrium flow downstream of a rough-to-smooth step change in surface roughness. Over the rough surface, wall shear stress results obtained through the form drag and the Reynolds stress methods are shown to be mutually consistent. Over the smooth surface, reference wall shear stress data is obtained through two optical methods: linear velocity profiles obtained through laser-Doppler anemometry and a sensor surface, the diverging fringe Doppler sensor. The work shows that the two most commonly used methods to determine the wall shear stress, the log-law gradient method and the Reynolds shear stress method, are completely inappropriate in the developing flow region. Preston tubes, on the other hand, are shown to perform well in the region of a non-equilibrium flow.
Linear instability and nonlinear motion of rotating plasma
International Nuclear Information System (INIS)
Liu, J.
1985-01-01
Two coupled nonlinear equations describing the flute dynamics of the magnetically confined low-β collisionless rotating plasma are derived. The linear instability and nonlinear dynamics of the rotating column are analyzed theoretically. In the linear stability analysis, a new sufficient condition of stability is obtained. From the exact solution of eigenvalue equation for Gaussian density profile and uniform rotation of the plasma, the stability of the system strongly depends on the direction of plasma rotation, FLR effect and the location of the conducting wall. An analytic expression showing the finite wall effect on different normal modes is obtained and it explains the different behavior of (1,0) normal mode from other modes. The sheared rotation driven instability is investigated by using three model equilibrium profiles, and the analytic expressions of eigenvalues which includes the wall effect are obtained. The analogy between shear rotation driven instability and the instability driven by sheared plane parallel flow in the inviscid fluid is analyzed. Applying the linear analysis to the central cell of tandem mirror system, the trapped particle instability with only passing electronics is analyzed. For uniform rotation and Gaussian density profile, an analytic expression that determines the stability boundary is found. The nonlinear analysis shows that the nonlinear equations have a solitary vortex solution which is very similar to the vortex solution of nonlinear Rossby wave equation
Directory of Open Access Journals (Sweden)
Maryna Perepelyuk
Full Text Available Tissues including liver stiffen and acquire more extracellular matrix with fibrosis. The relationship between matrix content and stiffness, however, is non-linear, and stiffness is only one component of tissue mechanics. The mechanical response of tissues such as liver to physiological stresses is not well described, and models of tissue mechanics are limited. To better understand the mechanics of the normal and fibrotic rat liver, we carried out a series of studies using parallel plate rheometry, measuring the response to compressive, extensional, and shear strains. We found that the shear storage and loss moduli G' and G" and the apparent Young's moduli measured by uniaxial strain orthogonal to the shear direction increased markedly with both progressive fibrosis and increasing compression, that livers shear strain softened, and that significant increases in shear modulus with compressional stress occurred within a range consistent with increased sinusoidal pressures in liver disease. Proteoglycan content and integrin-matrix interactions were significant determinants of liver mechanics, particularly in compression. We propose a new non-linear constitutive model of the liver. A key feature of this model is that, while it assumes overall liver incompressibility, it takes into account water flow and solid phase compressibility. In sum, we report a detailed study of non-linear liver mechanics under physiological strains in the normal state, early fibrosis, and late fibrosis. We propose a constitutive model that captures compression stiffening, tension softening, and shear softening, and can be understood in terms of the cellular and matrix components of the liver.
Lower hybrid waves instability in a velocity–sheared inhomogenous ...
African Journals Online (AJOL)
An electrostatic linear kinetic analysis of velocity-sheared inhomogeneous charged dust streaming parallel to a magnetic field in plasma is presented. Excited mode and the growth rates are derived in the lower hybrid-like mode regime, with collisional effects included. In the case where the drift velocity u is very small the ...
Dynamic constitutional frameworks for DNA biomimetic recognition.
Catana, Romina; Barboiu, Mihail; Moleavin, Ioana; Clima, Lilia; Rotaru, Alexandru; Ursu, Elena-Laura; Pinteala, Mariana
2015-02-07
Linear and cross-linked dynamic constitutional frameworks generated from reversibly interacting linear PEG/core constituents and cationic sites shed light on the dominant coiling versus linear DNA binding behaviours, closer to the histone DNA binding wrapping mechanism.
Reduced transport and ER shearing in improved confinement regimes in JT-60U
International Nuclear Information System (INIS)
Shirai, H.; Kikuchi, M.; Takizuka, T.
2001-01-01
The global confinement and the local transport properties of improved core confinement plasmas in JT-60U have been studied in connection with E r shear formation. The improved core confinement mode with ITB, the internal transport barrier, is roughly classified into 'parabolic' type ITBs and 'box' type ITBs. The parabolic type ITB has the reduced thermal diffusivity, χ, in the core region; however, the E r shear, dE r /dr, is not so strong. The box type ITB has a very strong E r shear at the thin ITB layer and the χ value decreases to the level of neoclassical transport there. The estimated ExB shearing rate, ω ExB , becomes almost the same as the linear growth rate of the drift microinstability, γ L , at the ITB layer in the box type ITB. Experiments of hot ion mode plasmas during the repetitive L-H-L transition shows that the thermal diffusivity clearly depends on the E r shear and the strong E r shear contributes to the reduced thermal diffusivity. (author)
Reduced transport and Er shearing in improved confinement regimes in JT-60U
International Nuclear Information System (INIS)
Shirai, H.; Kikuchi, M.; Takizuka, T.
1999-01-01
The global confinement and the local transport properties of improved core confinement plasmas in JT-60U were studied in connection with E r shear formation. In the improved core confinement mode with internal transport barriers (ITBs), these are roughly classified into 'parabolic type' ITBs and 'box type' ITBs. The parabolic type ITB has a reduced thermal diffusivity χ in the core region; however, the E r shear, dE r /dr, is not as strong. The box type ITB has a very strong E r shear at the thin ITB layer and χ decreases to the level of neoclassical transport there. The estimated E x B shearing rate, ω ExB , becomes almost the same as the linear growth rate of the drift microinstability, γ L , at the ITB layer in the box type ITB. Experiments with hot ion mode plasmas during the repetitive L-H-L transition showed that the thermal diffusivity clearly depends on the E r shear and the strong E r shear contributes to the reduced thermal diffusivity. (author)
The theoretical tensile strength of fcc crystals predicted from shear strength calculations
International Nuclear Information System (INIS)
Cerny, M; Pokluda, J
2009-01-01
This work presents a simple way of estimating uniaxial tensile strength on the basis of theoretical shear strength calculations, taking into account its dependence on a superimposed normal stress. The presented procedure enables us to avoid complicated and time-consuming analyses of elastic stability of crystals under tensile loading. The atomistic simulations of coupled shear and tensile deformations in cubic crystals are performed using first principles computational code based on pseudo-potentials and the plane wave basis set. Six fcc crystals are subjected to shear deformations in convenient slip systems and a special relaxation procedure controls the stress tensor. The obtained dependence of the ideal shear strength on the normal tensile stress seems to be almost linearly decreasing for all investigated crystals. Taking these results into account, the uniaxial tensile strength values in three crystallographic directions were evaluated by assuming a collapse of the weakest shear system. Calculated strengths for and loading were found to be mostly lower than previously calculated stresses related to tensile instability but rather close to those obtained by means of the shear instability analysis. On the other hand, the strengths for loading almost match the stresses related to tensile instability.
Nonlinear Simulations of Trapped Electron Mode Turbulence in Low Magnetic Shear Stellarators
Faber, B. J.; Pueschel, M. J.; Terry, P. W.; Hegna, C. C.
2017-10-01
Optimized stellarators, like the Helically Symmetric eXperiment (HSX), often operate with small global magnetic shear to avoid low-order rational surfaces and magnetic islands. Nonlinear, flux-tube gyrokinetic simulations of density-gradient-driven Trapped Electron Mode (TEM) turbulence in HSX shows two distinct spectral fluctuation regions: long-wavelength slab-like TEMs localized by global magnetic shear that extend along field lines and short-wavelength TEMs localized by local magnetic shear to a single helical bad curvature region. The slab-like TEMs require computational domains significantly larger than one poloidal turn and are computationally expensive, making turbulent optimization studies challenging. A computationally more efficient, zero-average-magnetic-shear approximation is shown to sufficiently describe the relevant nonlinear physics and replicate finite-shear computations, and can be exploited in quasilinear models based on linear gyrokinetics as a feasible optimization tool. TEM quasilinear heat fluxes are computed with the zero-shear approximation and compared to experimentally-relevant nonlinear gyrokinetic TEM heat fluxes for HSX. Research supported by U.S. DoE Grants DE-FG02-99ER54546, DE-FG02-93ER54222 and DE-FG02-89ER53291.
Ciancio, V.; Turrisi, E.; Kluitenberg, G.A.
1986-01-01
In a previous paper the propagation of linear longitudinal acoustic waves in isotropic media with shear and volume viscosity and a tensorial internal variable was considered and the expressions for the velocity and attenuation of the waves were obtained. In the present paper we investigate the
Numerical and Theoretical Studies of Turbulence and Transport with E x B Shear Flows
International Nuclear Information System (INIS)
Krommes, J.A.; Chance, M.S.; Hahm, T.S.; Lin, Z.
1999-01-01
This paper reports: (1) substantial transport reduction by turbulence-driven E x B flows observed in 3D nonlinear gyrokinetic simulations of microturbulence in magnetically-confined toroidal plasmas; (2) analytical derivation of the effective shearing rate for the time-dependent E x B flow; (3) interpretation of experimental data using linear gyrokinetic microinstability rotation models of E x B shear; and (4) other developments in gyrokinetic theory and simulation
Microfluidic thrombosis under multiple shear rates and antiplatelet therapy doses.
Directory of Open Access Journals (Sweden)
Melissa Li
Full Text Available The mainstay of treatment for thrombosis, the formation of occlusive platelet aggregates that often lead to heart attack and stroke, is antiplatelet therapy. Antiplatelet therapy dosing and resistance are poorly understood, leading to potential incorrect and ineffective dosing. Shear rate is also suspected to play a major role in thrombosis, but instrumentation to measure its influence has been limited by flow conditions, agonist use, and non-systematic and/or non-quantitative studies. In this work we measured occlusion times and thrombus detachment for a range of initial shear rates (500, 1500, 4000, and 10000 s(-1 and therapy concentrations (0-2.4 µM for eptifibatide, 0-2 mM for acetyl-salicylic acid (ASA, 3.5-40 Units/L for heparin using a microfluidic device. We also measured complete blood counts (CBC and platelet activity using whole blood impedance aggregometry. Effects of shear rate and dose were analyzed using general linear models, logistic regressions, and Cox proportional hazards models. Shear rates have significant effects on thrombosis/dose-response curves for all tested therapies. ASA has little effect on high shear occlusion times, even at very high doses (up to 20 times the recommended dose. Under ASA therapy, thrombi formed at high shear rates were 4 times more prone to detachment compared to those formed under control conditions. Eptifibatide reduced occlusion when controlling for shear rate and its efficacy increased with dose concentration. In contrast, the hazard of occlusion from ASA was several orders of magnitude higher than that of eptifibatide. Our results show similar dose efficacy to our low shear measurements using whole blood aggregometry. This quantitative and statistically validated study of the effects of a wide range of shear rate and antiplatelet therapy doses on occlusive thrombosis contributes to more accurate understanding of thrombosis and to models for optimizing patient treatment.
Shape oscillations of elastic particles in shear flow.
Subramaniam, Dhananjay Radhakrishnan; Gee, David J
2016-09-01
Particle suspensions are common to biological fluid flows; for example, flow of red- and white-blood cells, and platelets. In medical technology, current and proposed methods for drug delivery use membrane-bounded liquid capsules for transport via the microcirculation. In this paper, we consider a 3D linear elastic particle inserted into a Newtonian fluid and investigate the time-dependent deformation using a numerical simulation. Specifically, a boundary element technique is used to investigate the motion and deformation of initially spherical or spheroidal particles in bounded linear shear flow. The resulting deformed shapes reveal a steady-state profile that exhibits a 'tank-treading' motion for initially spherical particles. Wall effects on particle trajectory are seen to include a modified Jeffrey׳s orbit for spheroidal inclusions with a period that varies inversely with the strength of the shear flow. Alternately, spheroidal inclusions may exhibit either a 'tumbling' or 'trembling' motion depending on the initial particle aspect ratio and the capillary number (i.e., ratio of fluid shear to elastic restoring force). We find for a capillary number of 0.1, a tumbling mode transitions to a trembling mode at an aspect ratio of 0.87 (approx.), while for a capillary number of 0.2, this transition takes place at a lower aspect ratio. These oscillatory modes are consistent with experimental observations involving similarly shaped vesicles and thus serves to validate the use of a simple elastic constitutive model to perform relevant physiological flow calculations. Copyright © 2016 Elsevier Ltd. All rights reserved.
Energy Technology Data Exchange (ETDEWEB)
Fourment, C; Hoang, G T; Eriksson, L-G; Garbet, X; Litaudon, X; Tresset, G [EURATOM-CEA Association, CEA/DSM/DRFC, CEA Cadarache, 13108 St Paul-lez-Durance (France)
2003-03-01
The role of the current density profile on drift wave stability is investigated using a linear electrostatic gyro-kinetic code. The growth rates are shown to have a linear dependence on the normalized temperature gradients above a certain threshold. A parametric study of the threshold shows a dramatic stabilizing effect of negative magnetic shear, especially for large scale instabilities. A set of handy formulae fitting the threshold as a function of the magnetic shear and the safety factor is proposed. Analysis of reversed magnetic shear discharges with internal transport barrier (ITB) in JET shows that ion ITBs can be triggered by the negative magnetic shear in the core of the plasma. Subsequently, the increase of the ExB shearing rate allows for the expansion of the ITB, despite the increase of the linear growth rates due to the temperature gradient peaking. In the case of the electron ITB obtained in the Tore Supra LHEP mode, the central increase of the confinement is associated with the stabilization of large scale trapped electron modes by the negative magnetic shear effect, whereas the steep electron temperature gradient destabilizes the small scale electron temperature gradient modes, which prevent the electron heat transport to reach neoclassical levels.
Cosmic Shear With ACS Pure Parallels. Targeted Portion.
Rhodes, Jason
2002-07-01
Small distortions in the shapes of background galaxies by foreground mass provide a powerful method of directly measuring the amount and distribution of dark matter. Several groups have recently detected this weak lensing by large-scale structure, also called cosmic shear. The high resolution and sensitivity of HST/ACS provide a unique opportunity to measure cosmic shear accurately on small scales. Using 260 parallel orbits in Sloan i {F775W} we will measure for the first time: the cosmic shear variance on scales Omega_m^0.5, with signal-to-noise {s/n} 20, and the mass density Omega_m with s/n=4. They will be done at small angular scales where non-linear effects dominate the power spectrum, providing a test of the gravitational instability paradigm for structure formation. Measurements on these scales are not possible from the ground, because of the systematic effects induced by PSF smearing from seeing. Having many independent lines of sight reduces the uncertainty due to cosmic variance, making parallel observations ideal.
Coherent drift wave structures in sheared magnetic fields
International Nuclear Information System (INIS)
Morrison, P.J.; Horton, W.
1993-01-01
For the problem of calculating the coherent drift wave structures in sheared magnetic fields, the authors have found it useful to derive the governing nonlinear pde from a variational principle. The variational principle is based on the free energy functional F[var-phi] = ∫ V F(var-phi, ∇ var-phi, x)dx dy. The method is applied to the vortex with speed u derived in Su et al., given by ∇ 2 var-phi = (1 - v d /u) var-phi - S m 2 /u 2 (x - var-phi/u) (x - var-phi/2u) var-phi where space is measured in units of ρ s , var-phi = (eΦ/T e )(L n /ρ s ) and the magnetic shear parameter is S m . While the linearized problem (var-phi much-lt ux) describes the usual shear induced damping, nonlinear solutions with trapped flow (var-phi > ur 0 ) form nonlinear self-bound states, which are maxima of the free energy F. The authors discuss the analytic properties and the numerical procedures for solving these types of nonlinear pde's
Shear bands as growing instabilities in viscoanelastic media with memory
Directory of Open Access Journals (Sweden)
Marina Dolfin
2013-09-01
Full Text Available In this paper we investigate the critical conditions under which a small perturbation in an homogeneous continuum can possibly grows into a shear band instability. In particular, we analyze from a thermodynamical viewpoint the phenomenon of shear bands in viscoanelastic media with memory. It is emphasized, in the scientific literature, that the specific adopted rheology strongly affects the results so that a special attention has to be paid, also for engineering purposes, to the accuracy of the rheological model. Several well-known rheological model (for instance the so called Maxwell or Jeffreys media are particular cases of the general model we adopt in the paper to analyze shear bands. Instability conditions, giving rise to shear bands formation, are obtained by introducing small perturbations around an homogeneous deformation into the system of differential equations governing the problem of homogeneous deformations in the considered continuous medium; as a result a non-homogeneous linear dynamical system is obtained whose stability is analyzed. A research perspective in view of a possible comparison with experimental results is proposed; in particular the simple methodology proposed in the paper should be applied in view of using the phenomenon of the initiation of shear bands to calculate the thermomechanical coefficients of real materials.
Directory of Open Access Journals (Sweden)
Yoshiyuki Koyama
2015-07-01
Full Text Available We have reported that ternary complexes of plasmid DNA with conventional linear polyethylenimine (l-PEI and certain polyanions were very stably dispersed, and, with no cryoprotectant, they could be freeze-dried and re-hydrated without the loss of transfection ability. These properties enabled the preparation of a concentrated suspension of very small pDNA complex, by preparing the complexes at highly diluted conditions, followed by condensation via lyophilization-and-rehydration procedure. Recently, a high potency linear polyethylenimine having no residual protective groups, i.e., Polyethylenimine “Max” (PEI “Max”, is available, which has been reported to induce much higher gene expression than conventional l-PEI. We tried to prepare the small DNA/PEI “Max”/polyanion complexes by a similar freeze-drying method. Small complex particles could be obtained without apparent aggregation, but transfection activity of the rehydrated complexes was severely reduced. Complex-preparation conditions were investigated in details to achieve the freeze-dried DNA/PEI “Max”/polyanion small ternary complexes with high transfection efficiency. DNA/PEI “Max”/polyanion complexes containing cytokine-coding plasmids were then prepared, and their anti-tumor therapeutic efficacy was examined in tumor-bearing mice.
International Nuclear Information System (INIS)
Walton, O.R.; Braun, R.L.
1986-01-01
Employing nonequilibrium molecular-dynamics methods the effects of two energy loss mechanisms on viscosity, stress, and granular-temperature in assemblies of nearly rigid, inelastic frictional disks undergoing steady-state shearing are calculated. Energy introduced into the system through forced shearing is dissipated by inelastic normal forces or through frictional sliding during collisions resulting in a natural steady-state kinetic energy density (granular-temperature) that depends on the density and shear rate of the assembly and on the friction and inelasticity properties of the disks. The calculations show that both the mean deviatoric particle velocity and the effective viscosity of a system of particles with fixed friction and restitution coefficients increase almost linearly with strain rate. Particles with a velocity-dependent coefficient of restitution show a less rapid increase in both deviatoric velocity and viscosity as strain rate increases. Particles with highly dissipative interactions result in anisotropic pressure and velocity distributions in the assembly, particularly at low densities. At very high densities the pressure also becomes anisotropic due to high contact forces perpendicular to the shearing direction. The mean rotational velocity of the frictional disks is nearly equal to one-half the shear rate. The calculated ratio of shear stress to normal stress varies significantly with density while the ratio of shear stress to total pressure shows much less variation. The inclusion of surface friction (and thus particle rotation) decreases shear stress at low density but increases shear stress under steady shearing at higher densities
Linear Viscoelasticity, Reptation, Chain Stretching and Constraint Release
DEFF Research Database (Denmark)
Neergaard, Jesper; Schieber, Jay D.; Venerus, David C.
2000-01-01
A recently proposed self-consistent reptation model - alreadysuccessful at describing highly nonlinear shearing flows of manytypes using no adjustable parameters - is used here to interpretthe linear viscoelasticity of the same entangled polystyrenesolution. Using standard techniques, a relaxatio...
Momentum-energy transport from turbulence driven by parallel flow shear
International Nuclear Information System (INIS)
Dong, J.Q.; Horton, W.; Bengtson, R.D.; Li, G.X.
1994-04-01
The low frequency E x B turbulence driven by the shear in the mass flow velocity parallel to the magnetic field is studied using the fluid theory in a slab configuration with magnetic shear. Ion temperature gradient effects are taken into account. The eigenfunctions of the linear instability are asymmetric about the mode rational surfaces. Quasilinear Reynolds stress induced by such asymmetric fluctuations produces momentum and energy transport across the magnetic field. Analytic formulas for the parallel and perpendicular Reynolds stress, viscosity and energy transport coefficients are given. Experimental observations of the parallel and poloidal plasma flows on TEXT-U are presented and compared with the theoretical models
Shear Alfven wave excitation by direct antenna coupling and fast wave resonant mode conversion
International Nuclear Information System (INIS)
Borg, G.G.
1994-01-01
Antenna coupling to the shear Alfven wave by both direct excitation and fast wave resonant mode conversion is modelled analytically for a plasma with a one dimensional linear density gradient. We demonstrate the existence of a shear Alfven mode excited directly by the antenna. For localised antennas, this mode propagates as a guided beam along the steady magnetic field lines intersecting the antenna. Shear Alfven wave excitation by resonant mode conversion of a fast wave near the Alfven resonance layer is also demonstrated and we prove that energy is conserved in this process. We compare the efficiency of these two mechanisms of shear Alfven wave excitation and present a simple analytical formula giving the ratio of the coupled powers. Finally, we discuss the interpretation of some experimental results. 45 refs., 7 figs
Non-linear dynamic response of reactor containment
International Nuclear Information System (INIS)
Takemori, T.; Sotomura, K.; Yamada, M.
1975-01-01
A computer program was developed to investigate the elasto-plastic behavior of structures. This program is outlined and the problems of non-linear response of structures are discussed. Since the mode superposition method is only valid in an elastic analysis, the direct integration method was adopted here. As the sample model, an actual reactor containment (reactor building) of PWR plant was adopted. This building consists of three components, that is, a concrete internal structure, a steel containment vessel and a concrete outer shield wall. These components are resting on a rigid foundation mat. Therefore they were modeled with a lumped mass model respectively and coupled on the foundation. The following assumptions were employed to establish the properties of dynamic model: rocking and swaying springs of soil can be obtained from an elastic half-space solution, and the hysteretic characteristic of springs is bi-linear; springs connecting each mass are dealt with shear beams so that both bending and shear deflections can be included (Hysteretic characteristics of springs are linear, bi-linear and tri-linear for the internal structure, the containment vessel and the outer shield wall, respectively); generally, each damping coefficient is given for each mode in modal superposition (However, a damping matrix must be made directly in a non-linear response). Therefore the damping matrix of the model was made by combining the damping matrices [C] of each component obtained by Caughy's method and a damping value of the rocking and swaying by the half-space solution. On the basis of above conditions, the non-linear response of the structure was obtained and the difference between elastic and elasto-plastic analysis is presented
Nonlinear reflection of shock shear waves in soft elastic media.
Pinton, Gianmarco; Coulouvrat, François; Gennisson, Jean-Luc; Tanter, Mickaël
2010-02-01
For fluids, the theoretical investigation of shock wave reflection has a good agreement with experiments when the incident shock Mach number is large. But when it is small, theory predicts that Mach reflections are physically unrealistic, which contradicts experimental evidence. This von Neumann paradox is investigated for shear shock waves in soft elastic solids with theory and simulations. The nonlinear elastic wave equation is approximated by a paraxial wave equation with a cubic nonlinear term. This equation is solved numerically with finite differences and the Godunov scheme. Three reflection regimes are observed. Theory is developed for shock propagation by applying the Rankine-Hugoniot relations and entropic constraints. A characteristic parameter relating diffraction and non-linearity is introduced and its theoretical values are shown to match numerical observations. The numerical solution is then applied to von Neumann reflection, where curved reflected and Mach shocks are observed. Finally, the case of weak von Neumann reflection, where there is no reflected shock, is examined. The smooth but non-monotonic transition between these three reflection regimes, from linear Snell-Descartes to perfect grazing case, provides a solution to the acoustical von Neumann paradox for the shear wave equation. This transition is similar to the quadratic non-linearity in fluids.
Exercise-mediated wall shear stress increases mitochondrial biogenesis in vascular endothelium.
Directory of Open Access Journals (Sweden)
Boa Kim
Full Text Available Enhancing structural and functional integrity of mitochondria is an emerging therapeutic option against endothelial dysfunction. In this study, we sought to investigate the effect of fluid shear stress on mitochondrial biogenesis and mitochondrial respiratory function in endothelial cells (ECs using in vitro and in vivo complementary studies.Human aortic- or umbilical vein-derived ECs were exposed to laminar shear stress (20 dyne/cm2 for various durations using a cone-and-plate shear apparatus. We observed significant increases in the expression of key genes related to mitochondrial biogenesis and mitochondrial quality control as well as mtDNA content and mitochondrial mass under the shear stress conditions. Mitochondrial respiratory function was enhanced when cells were intermittently exposed to laminar shear stress for 72 hrs. Also, shear-exposed cells showed diminished glycolysis and decreased mitochondrial membrane potential (ΔΨm. Likewise, in in vivo experiments, mice that were subjected to a voluntary wheel running exercise for 5 weeks showed significantly higher mitochondrial content determined by en face staining in the conduit (greater and lesser curvature of the aortic arch and thoracic aorta and muscle feed (femoral artery arteries compared to the sedentary control mice. Interestingly, however, the mitochondrial biogenesis was not observed in the mesenteric artery. This region-specific adaptation is likely due to the differential blood flow redistribution during exercise in the different vessel beds.Taken together, our findings suggest that exercise enhances mitochondrial biogenesis in vascular endothelium through a shear stress-dependent mechanism. Our findings may suggest a novel mitochondrial pathway by which a chronic exercise may be beneficial for vascular function.
A study on shear behavior of reinforced concrete beams subjected to long-term heating
International Nuclear Information System (INIS)
Maruta, M.; Yamazaki, M.; Miyashita, T.
1995-01-01
A study has been undertaken to determine the shear behavior of reinforced concrete members in nuclear power plant facilities following sustained heating to high temperatures. A total of nine specimens was tested. The parameters of the tests were (1) heating temperature (65, 90 and 175 C) and (2) heating period (1, 3, 6 or 12 months). Different combinations of these parameters were employed, and the shear strength deterioration rate was evaluated. The test results were confirmed by a non-linear finite element analysis. The relationship between the concrete compressive strengths, which varied from heating face to upper portion, and the shear strength in specimens was evaluated. (orig.)
The interaction of two spheres in a simple-shear flow of complex fluids
Firouznia, Mohammadhossein; Metzger, Bloen; Ovarlez, Guillaume; Hormozi, Sarah
2017-11-01
We study the interaction of two small freely-moving spheres in a linear flow field of Newtonian, shear thinning and yield stress fluids. We perform a series of experiments over a range of shear rates as well as different shear histories using an original apparatus and with the aid of conventional rheometry, Particle Image Velocimetry and Particle Tracking Velocimetry. Showing that the non-Newtonian nature of the suspending fluid strongly affects the shape of particle trajectories and the irreversibility. An important point is that non-Newtonian effects can be varied and unusual. Depending on the shear rate, nonideal shear thinning and yield stress suspending fluids might show elasticity that needs to be taken into account. The flow field around one particle is studied in different fluids when subjected to shear. Then using these results to explain the two particle interactions in a simple-shear flow we show how particle-particle contact and non-Newtonian behaviors result in relative trajectories with fore-aft asymmetry. Well-resolved velocity and stress fields around the particles are presented here. Finally, we discuss how the relative particle trajectories may affect the microstructure of complex suspensions and consequently the bulk rheology. NSF (Grant No. CBET-1554044-CAREER).
Constitutive Curve and Velocity Profile in Entangled Polymers during Start-Up of Steady Shear Flow
Hayes, Keesha A.
2010-05-11
Time-dependent shear stress versus shear rate, constitutive curve, and velocity profile measurements are reported in entangled polymer solutions during start-up of steady shear flow. By combining confocal microscopy and particle image velocimetry (PIV), we determine the time-dependent velocity profile in polybutadiene and polystyrene solutions seeded with fluorescent 150 nm silica and 7.5 μm melamine particles. By comparing these profiles with time-dependent constitutive curves obtained from experiment and theory, we explore the connection between transient nonmonotonic regions in the constitutive curve for an entangled polymer and its susceptibility to unstable flow by shear banding [Adams et al. Phys. Rev. Lett. 2009, 102, 067801-4]. Surprisingly, we find that even polymer systems which exhibit transient, nonmonotonic shear stress-shear rate relationships in bulk rheology experiments manifest time-dependent velocity profiles that are decidedly linear and show no evidence of unstable flow. We also report that interfacial slip plays an important role in the steady shear flow behavior of entangled polymers at shear rates above the reciprocal terminal relaxation time but has little, if any, effect on the shape of the velocity profile. © 2010 American Chemical Society.
Energetic particle destabilization of shear Alfven waves in stellarators and tokamaks
International Nuclear Information System (INIS)
Spong, D.A.; Carreras, B.A.; Hedrick, C.L.; Leboeuf, J.N.; Weller, A.
1994-01-01
An important issue for ignited devices is the resonant destabilization of shear Alfven waves by energetic populations. These instabilities have been observed in a variety of toroidal plasma experiments in recent years, including: beam-destabilized toroidal Alfven instabilities (TAE) in low magnetic field tokamaks, ICRF destabilized TAE's in higher field tokamaks, and global Alfven instabilities (GAE) in low shear stellarators. In addition, excitation and study of these modes is a significant goal of the TFIR-DT program and a component of the ITER physics tasks. The authors have developed a gyrofluid model which includes the wave-particle resonances necessary to excite such instabilities. The TAE linear mode structure is calculated nonperturbatively, including many of the relevant damping mechanisms, such as: continuum damping, non-ideal effects (ion FLR and electron collisionality), and ion/electron Landau damping. This model has been applied to both linear and nonlinear regimes for a range of experimental cases using measured profiles
A new protocol for extraction of C 0 t-1 DNA from rice | Yan | African ...
African Journals Online (AJOL)
C0t-1 DNA, enriched for repetitive DNA sequences, has been proved to be valuable in the studies of plant species differentiation and genome evolution. A new protocol to steadily obtain the aimed range of DNA fragments has been developed by shearing the genomic DNA with the digest system containing DNase ...
Sahoo, Amaresh Kumar; Sk, Md Palashuddin; Ghosh, Siddhartha Sankar; Chattopadhyay, Arun
2011-10-01
Herein, we report the generation of a composite comprised of p-hydroxyacetanilide dimer and Ag nanoparticles (NPs) by reaction of AgNO3 and p-hydroxyacetanilide. The formation of the composite was established by UV-vis, FTIR and NMR spectroscopy, transmission electron microscopy and X-ray diffraction along with substantiation by mass spectrometry. Interestingly, the composite exhibited an emission spectrum with a peak at 435 nm when excited by light of wavelength 320 nm. The composite showed superior antimicrobial activity with respect to its individual components against a wide range of Gram positive and Gram negative bacteria at relatively low concentrations of Ag NPs and at which there was no apparent cytotoxicity against mammalian cells. Our results suggest that the composite strongly interacted with the bacterial cell walls leading to cell bursting. Interestingly, enhancement in the reactive oxygen species (ROS) generation in bacteria was observed in the presence of the composite. It is proposed that the ROS generation led to oxidation of the dimer to N-acetyl-p-benzoquinone imine (NAPQI). The generated NAPQI acted as a DNA gyrase inhibitor causing cell death following linearization of DNA.Herein, we report the generation of a composite comprised of p-hydroxyacetanilide dimer and Ag nanoparticles (NPs) by reaction of AgNO3 and p-hydroxyacetanilide. The formation of the composite was established by UV-vis, FTIR and NMR spectroscopy, transmission electron microscopy and X-ray diffraction along with substantiation by mass spectrometry. Interestingly, the composite exhibited an emission spectrum with a peak at 435 nm when excited by light of wavelength 320 nm. The composite showed superior antimicrobial activity with respect to its individual components against a wide range of Gram positive and Gram negative bacteria at relatively low concentrations of Ag NPs and at which there was no apparent cytotoxicity against mammalian cells. Our results suggest that the
Damage Detection of Reinforced Concrete Shear Walls Using Mathematical Transformations
Directory of Open Access Journals (Sweden)
Hosein Naderpour
2017-02-01
Full Text Available Structural health monitoring is a procedure to provide accurate and immediate information on the condition and efficiency of structures. There is variety of damage factors and the unpredictability of future damage, is a necessity for the use of structural health monitoring. Structural health monitoring and damage detection in early stages is one of the most interesting topics that had been paid attention because the majority of damages can be repaired and reformed by initial evaluation ,thus the spread of damage to the structures, building collapse and rising of costs can be avoided .Detection of concrete shear wall damages are designed to withstand the lateral load on the structure is critical .Because failures and malfunctions of shear walls can lead to serious damage or even progressive dilapidation of concrete structures .Change in stiffness and frequency can clearly show the damage occurrence. Mathematical transformation is also a tool to detect damage. In this article, with non- linear time history analysis, the finite element model of structures with concrete shear walls subject to four earthquakes have extracted and using Fourier and wavelet transform, the presence of shear walls is detected at the time of damage.
Energy Technology Data Exchange (ETDEWEB)
Chen, Xi; Ballin, Jeff D.; Della-Maria, Julie; Tsai, Miaw-Sheue; White, Elizabeth J.; Tomkinson, Alan E.; Wilson, Gerald M.
2009-05-11
The three human LIG genes encode polypeptides that catalyze phosphodiester bond formation during DNA replication, recombination and repair. While numerous studies have identified protein partners of the human DNA ligases (hLigs), there has been little characterization of the catalytic properties of these enzymes. In this study, we developed and optimized a fluorescence-based DNA ligation assay to characterize the activities of purified hLigs. Although hLigI joins DNA nicks, it has no detectable activity on linear duplex DNA substrates with short, cohesive single-strand ends. By contrast, hLigIII{beta} and the hLigIII{alpha}/XRCC1 and hLigIV/XRCC4 complexes are active on both nicked and linear duplex DNA substrates. Surprisingly, hLigIV/XRCC4, which is a key component of the major non-homologous end joining (NHEJ) pathway, is significantly less active than hLigIII on a linear duplex DNA substrate. Notably, hLigIV/XRCC4 molecules only catalyze a single ligation event in the absence or presence of ATP. The failure to catalyze subsequent ligation events reflects a defect in the enzyme-adenylation step of the next ligation reaction and suggests that, unless there is an in vivo mechanism to reactivate DNA ligase IV/XRCC4 following phosphodiester bond formation, the cellular NHEJ capacity will be determined by the number of adenylated DNA ligaseIV/XRCC4 molecules.
Shear thinning and shear thickening of a confined suspension of vesicles
Nait Ouhra, A.; Farutin, A.; Aouane, O.; Ez-Zahraouy, H.; Benyoussef, A.; Misbah, C.
2018-01-01
Widely regarded as an interesting model system for studying flow properties of blood, vesicles are closed membranes of phospholipids that mimic the cytoplasmic membranes of red blood cells. In this study we analyze the rheology of a suspension of vesicles in a confined geometry: the suspension, bound by two planar rigid walls on each side, is subject to a shear flow. Flow properties are then analyzed as a function of shear rate γ ˙, the concentration of the suspension ϕ , and the viscosity contrast λ =ηin/ηout , where ηin and ηout are the fluid viscosities of the inner and outer fluids, respectively. We find that the apparent (or effective viscosity) of the suspension exhibits both shear thinning (decreasing viscosity with shear rate) or shear thickening (increasing viscosity with shear rate) in the same concentration range. The shear thinning or thickening behaviors appear as subtle phenomena, dependant on viscosity contrast λ . We provide physical arguments on the origins of these behaviors.
Namani, R.; Feng, Y.; Okamoto, R. J.; Jesuraj, N.; Sakiyama-Elbert, S. E.; Genin, G. M.; Bayly, P. V.
2012-01-01
The mechanical characterization of soft anisotropic materials is a fundamental challenge because of difficulties in applying mechanical loads to soft matter and the need to combine information from multiple tests. A method to characterize the linear elastic properties of transversely isotropic soft materials is proposed, based on the combination of dynamic shear testing (DST) and asymmetric indentation. The procedure was demonstrated by characterizing a nearly incompressible transversely isotropic soft material. A soft gel with controlled anisotropy was obtained by polymerizing a mixture of fibrinogen and thrombin solutions in a high field magnet (B = 11.7 T); fibrils in the resulting gel were predominantly aligned parallel to the magnetic field. Aligned fibrin gels were subject to dynamic (20–40 Hz) shear deformation in two orthogonal directions. The shear storage modulus was 1.08 ± 0. 42 kPa (mean ± std. dev.) for shear in a plane parallel to the dominant fiber direction, and 0.58 ± 0.21 kPa for shear in the plane of isotropy. Gels were indented by a rectangular tip of a large aspect ratio, aligned either parallel or perpendicular to the normal to the plane of transverse isotropy. Aligned fibrin gels appeared stiffer when indented with the long axis of a rectangular tip perpendicular to the dominant fiber direction. Three-dimensional numerical simulations of asymmetric indentation were used to determine the relationship between direction-dependent differences in indentation stiffness and material parameters. This approach enables the estimation of a complete set of parameters for an incompressible, transversely isotropic, linear elastic material. PMID:22757501
Air permeability for a concrete shear wall after a damaging seismic load simulation cycle
International Nuclear Information System (INIS)
Girrens, S.P.; Farrar, C.R.
1991-01-01
A study was initiated to estimate air leakage, driven by wind-generated pressure gradients, from a seismically damaged concrete structure. This paper describes an experiment performed to measure the air permeability in a reinforced concrete shear wall, both before and after simulated seismic loading. Static load-cycle testing was used to simulate earthquake loading. Permeability measurements were made by pressurizing one side of the shear wall above atmospheric conditions and recording the transient-pressure decay. Air permeability measurements made on the shear wall before loading fell within the range of values for concrete permeability published in the literature. As long as the structure exhibited linear load-displacement response, no variation in the air permeability was detected. However, experimental results indicate that the air permeability in the shear wall increased by a factor of 40 after the wall had been damaged (cracked)
Computation of shear-induced collective-diffusivity in emulsions
Malipeddi, Abhilash Reddy; Sarkar, Kausik
2017-11-01
The shear-induced collective-diffusivity of drops in an emulsion is calculated through simulation. A front-tracking finite difference method is used to integrate the Navier-Stokes equations. When a cloud of drops is subjected to shear flow, after a certain time, the width of the cloud increases with the 1/3 power of time. This scaling of drop-cloud-width with time is characteristic of (sub-)diffusion that arises from irreversible two-drop interactions. The collective diffusivity is calculated from this relationship. A feature of the procedure adopted here is the modest computational requirement, wherein, a few drops ( 70) in shear for short time ( 70 strain) is found to be sufficient to get a good estimate. As far as we know, collective-diffusivity has not been calculated for drops through simulation till now. The computed values match with experimental measurements reported in the literature. The diffusivity in emulsions is calculated for a range of Capillary (Ca) and Reynolds (Re) numbers. It is found to be a unimodal function of Ca , similar to self-diffusivity. A sub-linear increase of the diffusivity with Re is seen for Re < 5 . This work has been limited to a viscosity matched case.
Kuiroukidis, Ap.; Throumoulopoulos, G. N.
2015-08-01
We construct nonlinear toroidal equilibria of fixed diverted boundary shaping with reversed magnetic shear and flows parallel to the magnetic field. The equilibria have hole-like current density and the reversed magnetic shear increases as the equilibrium nonlinearity becomes stronger. Also, application of a sufficient condition for linear stability implies that the stability is improved as the equilibrium nonlinearity correlated to the reversed magnetic shear gets stronger with a weaker stabilizing contribution from the flow. These results indicate synergetic stabilizing effects of reversed magnetic shear, equilibrium nonlinearity and flow in the establishment of Internal Transport Barriers (ITBs).
Nonlinear damping for vibration isolation of microsystems using shear thickening fluid
Iyer, S. S.; Vedad-Ghavami, R.; Lee, H.; Liger, M.; Kavehpour, H. P.; Candler, R. N.
2013-06-01
This work reports the measurement and analysis of nonlinear damping of micro-scale actuators immersed in shear thickening fluids (STFs). A power-law damping term is added to the linear second-order model to account for the shear-dependent viscosity of the fluid. This nonlinear model is substantiated by measurements of oscillatory motion of a torsional microactuator. At high actuation forces, the vibration velocity amplitude saturates. The model accurately predicts the nonlinear damping characteristics of the STF using a power-law index extracted from independent rheology experiments. This result reveals the potential to use STFs as adaptive, passive dampers for vibration isolation of microelectromechanical systems.
Pore Fluid Effects on Shear Modulus for Sandstones with Soft Anisotropy
International Nuclear Information System (INIS)
Berryman, J G
2004-01-01
A general analysis of poroelasticity for vertical transverse isotropy (VTI) shows that four eigenvectors are pure shear modes with no coupling to the pore-fluidmechanics. The remaining two eigenvectors are linear combinations of pure compression and uniaxial shear, both of which are coupled to the fluid mechanics. After reducing the problem to a 2x2 system, the analysis shows in a relatively elementary fashion how a poroelastic system with isotropic solid elastic frame, but with anisotropy introduced through the poroelastic coefficients, interacts with the mechanics of the pore fluid and produces shear dependence on fluid properties in the overall mechanical system. The analysis shows, for example, that this effect is always present (though sometimes small in magnitude) in the systems studied, and can be quite large (up to a definite maximum increase of 20 per cent) in some rocks--including Spirit River sandstone and Schuler-Cotton Valley sandstone
Liu, Yun-Hua; Zhang, Meiping; Wu, Chengcang; Huang, James J; Zhang, Hong-Bin
2014-01-01
Knowledge of how a genome is structured and organized from its constituent elements is crucial to understanding its biology and evolution. Here, we report the genome structuring and organization pattern as revealed by systems analysis of the sequences of three model species, Arabidopsis, rice and yeast, at the whole-genome and chromosome levels. We found that all fundamental function elements (FFE) constituting the genomes, including genes (GEN), DNA transposable elements (DTE), retrotransposable elements (RTE), simple sequence repeats (SSR), and (or) low complexity repeats (LCR), are structured in a nonrandom and correlative manner, thus leading to a hypothesis that the DNA of the species is structured as a linear "jigsaw puzzle". Furthermore, we showed that different FFE differ in their importance in the formation and evolution of the DNA jigsaw puzzle structure between species. DTE and RTE play more important roles than GEN, LCR, and SSR in Arabidopsis, whereas GEN and RTE play more important roles than LCR, SSR, and DTE in rice. The genes having multiple recognized functions play more important roles than those having single functions. These results provide useful knowledge necessary for better understanding genome biology and evolution of the species and for effective molecular breeding of rice.
Shear-induced partial translational ordering of a colloidal solid
Ackerson, B. J.; Clark, N. A.
1984-08-01
Highly charged submicrometer plastic spheres suspended in water at low ionic strength will order spontaneously into bcc crystals or polycrystals. A simple linear shear orients and disorders these crystals by forcing (110) planes to stack normal to the shear gradient and to slide relative to each other with a direction parallel to the solvent flow. In this paper we analyze in detail the disordering and flow processes occurring beyond the intrinsic elastic limit of the bcc crystal. We are led to a model in which the flow of a colloidal crystal is interpreted as a fundamentally different process from that found in atomic crystals. In the colloidal crystal the coupling of particle motion to the background fluid forces a homogeneous flow, where every layer is in motion relative to its neighboring layers. In contrast, the plastic flow in an atomic solid is defect mediated flow. At the lowest applied stress, the local bcc order in the colloidal crystal exhibits shear strains both parallel and perpendicular to the direction of the applied stress. The magnitude of these deformations is estimated using the configurational energy for bcc and distorted bcc crystals, assuming a screened Coulomb pair interaction between colloidal particles. As the applied stress is increased, the intrinsic elastic limit of the crystal is exceeded and the crystal begins to flow with adjacent layers executing an oscillatory path governed by the balance of viscous and screened Coulomb forces. The path takes the structure from the bcc1 and bcc2 twins observed at zero shear to a distorted two-dimensional hcp structure at moderate shear rates, with a loss of interlayer registration as the shear is increased. This theoretical model is consistent with other experimental observations, as well.
Reaction of misonidazole with DNA radicals and its effect on the template activity of DNA
International Nuclear Information System (INIS)
Endoh, Daiji; Kuwabara, Mikinori; Sato, Fumiaki; Yoshii, Giichi.
1985-01-01
After calf thymus DNA was gamma-irradiated in the solid state in vacuo and subsequently dissolved in aqueous solution containing misonidazole (3 mM) under hypoxic condition, the frequency of single-strand breaks and alkali-labile sites in DNA and the amount of misonidazole bound to DNA were measured. The presence of misonidazole converted the precursor radicals, which otherwise results in single-strand breaks, to alkali-labile sites, and the amount of alkali-labile sites increased linearly with increasing radiation dose. The amount of misonidazole bound to DNA also increased linearly with increasing radiation dose. The biological meaning of the changes in the frequency of single-strand breaks and alkali-labile sites by the reaction of misonidazole with DNA radicals and of binding misonidazole with DNA was examined using a model system to measure the template activity of DNA for RNA synthesis in vitro. The conversion of DNA radicals to alkali-labile sites protected the radiation-induced decrease in the template activity of DNA, while the adduct formation of misonidazole had no effect on it. (author)
The effects of buoyancy on shear-induced melt bands in a compacting porous medium
Butler, S. L.
2009-03-01
It has recently been shown [Holtzman, B., Groebner, N., Zimmerman, M., Ginsberg, S., Kohlstedt, D., 2003. Stress-driven melt segregation in partially molten rocks. Geochem. Geophys. Geosyst. 4, Art. No. 8607; Holtzman, B.K., Kohlstedt, D.L., 2007. Stress-driven melt segregation and strain partitioning in partially molten rocks: effects of stress and strain. J. Petrol. 48, 2379-2406] that when partially molten rock is subjected to simple shear, bands of high and low porosity are formed at a particular angle to the direction of instantaneous maximum extension. These have been modeled numerically and it has been speculated that high porosity bands may form an interconnected network with a bulk, effective permeability that is enhanced in a direction parallel to the bands. As a result, the bands may act to focus mantle melt towards the axis of mid-ocean ridges [Katz, R.F., Spiegelman, M., Holtzman, B., 2006. The dynamics of melt and shear localization in partially molten aggregates. Nature 442, 676-679]. In this contribution, we examine the combined effects of buoyancy and matrix shear on a deforming porous layer. The linear theory of Spiegelman [Spiegelman, M., 1993. Flow in deformable porous media. Part 1. Simple analysis. J. Fluid Mech. 247, 17-38; Spiegelman, M., 2003. Linear analysis of melt band formation by simple shear. Geochem. Geophys. Geosyst. 4, doi:10.1029/2002GC000499, Article 8615] and Katz et al. [Katz, R.F., Spiegelman, M., Holtzman, B., 2006. The dynamics of melt and shear localization in partially molten aggregates. Nature 442, 676-679] is generalized to include both the effects of buoyancy and matrix shear on a deformable porous layer with strain-rate dependent rheology. The predictions of linear theory are compared with the early time evolution of our 2D numerical model and they are found to be in excellent agreement. For conditions similar to the upper mantle, buoyancy forces can be similar to or much greater than matrix shear-induced forces. The
DNA cytoskeleton for stabilizing artificial cells.
Kurokawa, Chikako; Fujiwara, Kei; Morita, Masamune; Kawamata, Ibuki; Kawagishi, Yui; Sakai, Atsushi; Murayama, Yoshihiro; Nomura, Shin-Ichiro M; Murata, Satoshi; Takinoue, Masahiro; Yanagisawa, Miho
2017-07-11
Cell-sized liposomes and droplets coated with lipid layers have been used as platforms for understanding live cells, constructing artificial cells, and implementing functional biomedical tools such as biosensing platforms and drug delivery systems. However, these systems are very fragile, which results from the absence of cytoskeletons in these systems. Here, we construct an artificial cytoskeleton using DNA nanostructures. The designed DNA oligomers form a Y-shaped nanostructure and connect to each other with their complementary sticky ends to form networks. To undercoat lipid membranes with this DNA network, we used cationic lipids that attract negatively charged DNA. By encapsulating the DNA into the droplets, we successfully created a DNA shell underneath the membrane. The DNA shells increased interfacial tension, elastic modulus, and shear modulus of the droplet surface, consequently stabilizing the lipid droplets. Such drastic changes in stability were detected only when the DNA shell was in the gel phase. Furthermore, we demonstrate that liposomes with the DNA gel shell are substantially tolerant against outer osmotic shock. These results clearly show the DNA gel shell is a stabilizer of the lipid membrane akin to the cytoskeleton in live cells.
Direct numerical simulations of premixed autoignition in compressible uniformly-sheared turbulence
Towery, Colin; Darragh, Ryan; Poludnenko, Alexei; Hamlington, Peter
2017-11-01
High-speed combustion systems, such as scramjet engines, operate at high temperatures and pressures, extremely short combustor residence times, very high rates of shear stress, and intense turbulent mixing. As a result, the reacting flow can be premixed and have highly-compressible turbulence fluctuations. We investigate the effects of compressible turbulence on the ignition delay time, heat-release-rate (HRR) intermittency, and mode of autoignition of premixed Hydrogen-air fuel in uniformly-sheared turbulence using new three-dimensional direct numerical simulations with a multi-step chemistry mechanism. We analyze autoignition in both the Eulerian and Lagrangian reference frames at eight different turbulence Mach numbers, Mat , spanning the quasi-isentropic, linear thermodynamic, and nonlinear compressibility regimes, with eddy shocklets appearing in the nonlinear regime. Results are compared to our previous study of premixed autoignition in isotropic turbulence at the same Mat and with a single-step reaction mechanism. This previous study found large decreases in delay times and large increases in HRR intermittency between the linear and nonlinear compressibility regimes and that detonation waves could form in both regimes.
Shear rate analysis of water dynamic in the continuous stirred tank
Tulus; Mardiningsih; Sawaluddin; Sitompul, O. S.; Ihsan, A. K. A. M.
2018-02-01
Analysis of mixture in a continuous stirred tank reactor (CSTR) is an important part in some process of biogas production. This paper is a preliminary study of fluid dynamic phenomenon in a continuous stirred tank numerically. The tank is designed in the form of cylindrical tank equipped with a stirrer. In this study, it is considered that the tank is filled with water. Stirring is done with a stirring speed of 10rpm, 15rpm, 20rpm, and 25rpm. Mathematical modeling of stirred tank is derived. The model is calculated by using the finite element method that are calculated using CFD software. The result shows that the shear rate is high on the front end portion of the stirrer. The maximum shear rate tend to a stable behaviour after the stirring time of 2 second. The relation between the speed and the maximum shear rate is in the form of linear equation.
Second-harmonic generation in shear wave beams with different polarizations
Spratt, Kyle S.; Ilinskii, Yurii A.; Zabolotskaya, Evgenia A.; Hamilton, Mark F.
2015-10-01
A coupled pair of nonlinear parabolic equations was derived by Zabolotskaya [1] that model the transverse components of the particle motion in a collimated shear wave beam propagating in an isotropic elastic solid. Like the KZK equation, the parabolic equation for shear wave beams accounts consistently for the leading order effects of diffraction, viscosity and nonlinearity. The nonlinearity includes a cubic nonlinear term that is equivalent to that present in plane shear waves, as well as a quadratic nonlinear term that is unique to diffracting beams. The work by Wochner et al. [2] considered shear wave beams with translational polarizations (linear, circular and elliptical), wherein second-order nonlinear effects vanish and the leading order nonlinear effect is third-harmonic generation by the cubic nonlinearity. The purpose of the current work is to investigate the quadratic nonlinear term present in the parabolic equation for shear wave beams by considering second-harmonic generation in Gaussian beams as a second-order nonlinear effect using standard perturbation theory. In order for second-order nonlinear effects to be present, a broader class of source polarizations must be considered that includes not only the familiar translational polarizations, but also polarizations accounting for stretching, shearing and rotation of the source plane. It is found that the polarization of the second harmonic generated by the quadratic nonlinearity is not necessarily the same as the polarization of the source-frequency beam, and we are able to derive a general analytic solution for second-harmonic generation from a Gaussian source condition that gives explicitly the relationship between the polarization of the source-frequency beam and the polarization of the second harmonic.
Second-harmonic generation in shear wave beams with different polarizations
Energy Technology Data Exchange (ETDEWEB)
Spratt, Kyle S., E-mail: sprattkyle@gmail.com; Ilinskii, Yurii A.; Zabolotskaya, Evgenia A.; Hamilton, Mark F. [Applied Research Laboratories, The University of Texas at Austin, P. O. Box 8029, Austin, Texas 78713–8029, US (United States)
2015-10-28
A coupled pair of nonlinear parabolic equations was derived by Zabolotskaya [1] that model the transverse components of the particle motion in a collimated shear wave beam propagating in an isotropic elastic solid. Like the KZK equation, the parabolic equation for shear wave beams accounts consistently for the leading order effects of diffraction, viscosity and nonlinearity. The nonlinearity includes a cubic nonlinear term that is equivalent to that present in plane shear waves, as well as a quadratic nonlinear term that is unique to diffracting beams. The work by Wochner et al. [2] considered shear wave beams with translational polarizations (linear, circular and elliptical), wherein second-order nonlinear effects vanish and the leading order nonlinear effect is third-harmonic generation by the cubic nonlinearity. The purpose of the current work is to investigate the quadratic nonlinear term present in the parabolic equation for shear wave beams by considering second-harmonic generation in Gaussian beams as a second-order nonlinear effect using standard perturbation theory. In order for second-order nonlinear effects to be present, a broader class of source polarizations must be considered that includes not only the familiar translational polarizations, but also polarizations accounting for stretching, shearing and rotation of the source plane. It is found that the polarization of the second harmonic generated by the quadratic nonlinearity is not necessarily the same as the polarization of the source-frequency beam, and we are able to derive a general analytic solution for second-harmonic generation from a Gaussian source condition that gives explicitly the relationship between the polarization of the source-frequency beam and the polarization of the second harmonic.
Second-harmonic generation in shear wave beams with different polarizations
International Nuclear Information System (INIS)
Spratt, Kyle S.; Ilinskii, Yurii A.; Zabolotskaya, Evgenia A.; Hamilton, Mark F.
2015-01-01
A coupled pair of nonlinear parabolic equations was derived by Zabolotskaya [1] that model the transverse components of the particle motion in a collimated shear wave beam propagating in an isotropic elastic solid. Like the KZK equation, the parabolic equation for shear wave beams accounts consistently for the leading order effects of diffraction, viscosity and nonlinearity. The nonlinearity includes a cubic nonlinear term that is equivalent to that present in plane shear waves, as well as a quadratic nonlinear term that is unique to diffracting beams. The work by Wochner et al. [2] considered shear wave beams with translational polarizations (linear, circular and elliptical), wherein second-order nonlinear effects vanish and the leading order nonlinear effect is third-harmonic generation by the cubic nonlinearity. The purpose of the current work is to investigate the quadratic nonlinear term present in the parabolic equation for shear wave beams by considering second-harmonic generation in Gaussian beams as a second-order nonlinear effect using standard perturbation theory. In order for second-order nonlinear effects to be present, a broader class of source polarizations must be considered that includes not only the familiar translational polarizations, but also polarizations accounting for stretching, shearing and rotation of the source plane. It is found that the polarization of the second harmonic generated by the quadratic nonlinearity is not necessarily the same as the polarization of the source-frequency beam, and we are able to derive a general analytic solution for second-harmonic generation from a Gaussian source condition that gives explicitly the relationship between the polarization of the source-frequency beam and the polarization of the second harmonic
Shear strength of non-shear reinforced concrete elements
DEFF Research Database (Denmark)
Hoang, Cao linh
1997-01-01
The paper deals with the shear strength of prestressed hollow-core slabs determined by the theory of plasticity. Two failure mechanisms are considered in order to derive the solutions.In the case of sliding failure in a diagonal crack, the shear strength is determined by means of the crack sliding...
DNA Open states and DNA hydratation
International Nuclear Information System (INIS)
Lema-Larre, B. de; Martin-Landrove, M
1995-01-01
It is a very well-known fact that an protonic exchange exists among natural DNA filaments and synthetic polynucleotides with the solvent (1--2). The existence of DNA open states, that is to say states for which the interior of the DNA molecule is exposed to the external environment, it has been demonstrated by means of proton-deuterium exchange (3). This work has carried out experiments measuring the dispersion of the traverse relaxation rate (4), as a pulsation rate function in a Carr-Purcell-Meiboom-Gill (CPMG) pulses sequence rate, to determine changes in the moist layer of the DNA molecule. The experiments were carried out under different experimental conditions in order to vary the probability that open states occurs, such as temperature or the exposure to electromagnetic fields. Some theoretical models were supposed to adjust the experimental results including those related to DNA non linear dynamic [es
Hydraulic properties of 3D rough-walled fractures during shearing: An experimental study
Yin, Qian; Ma, Guowei; Jing, Hongwen; Wang, Huidong; Su, Haijian; Wang, Yingchao; Liu, Richeng
2017-12-01
This study experimentally analyzed the influence of shear processes on nonlinear flow behavior through 3D rough-walled rock fractures. A high-precision apparatus was developed to perform stress-dependent fluid flow tests of fractured rocks. Then, water flow tests on rough-walled fractures with different mechanical displacements were conducted. At each shear level, the hydraulic pressure ranged from 0 to 0.6 MPa, and the normal load varied from 7 to 35 kN. The results show that (i) the relationship between the volumetric flow rate and hydraulic gradient of rough-walled fractures can be well fit using Forchheimer's law. Notably, both the linear and nonlinear coefficients in Forchheimer's law decrease during shearing; (ii) a sixth-order polynomial function is used to evaluate the transmissivity based on the Reynolds number of fractures during shearing. The transmissivity exhibits a decreasing trend as the Reynolds number increases and an increasing trend as the shear displacement increases; (iii) the critical hydraulic gradient, critical Reynolds number and equivalent hydraulic aperture of the rock fractures all increase as the shear displacement increases. When the shear displacement varies from 0 to 15 mm, the critical hydraulic gradient ranges from 0.3 to 2.2 for a normal load of 7 kN and increases to 1.8-8.6 for a normal load of 35 kN; and (iv) the Forchheimer law results are evaluated by plotting the normalized transmissivity of the fractures during shearing against the Reynolds number. An increase in the normal load shifts the fitted curves downward. Additionally, the Forchheimer coefficient β decreases with the shear displacement but increases with the applied normal load.
High-frequency shear-horizontal surface acoustic wave sensor
Branch, Darren W
2013-05-07
A Love wave sensor uses a single-phase unidirectional interdigital transducer (IDT) on a piezoelectric substrate for leaky surface acoustic wave generation. The IDT design minimizes propagation losses, bulk wave interferences, provides a highly linear phase response, and eliminates the need for impedance matching. As an example, a high frequency (.about.300-400 MHz) surface acoustic wave (SAW) transducer enables efficient excitation of shear-horizontal waves on 36.degree. Y-cut lithium tantalate (LTO) giving a highly linear phase response (2.8.degree. P-P). The sensor has the ability to detect at the pg/mm.sup.2 level and can perform multi-analyte detection in real-time. The sensor can be used for rapid autonomous detection of pathogenic microorganisms and bioagents by field deployable platforms.
Energy Technology Data Exchange (ETDEWEB)
Worth Longest, P. [Virginia Commonwealth University, Richmond, VA (United States). Dept. of Mechanical Engineering; Kleinstreuer, C. [North Carolina State University, Raleigh, NC (United States). Dept. of Mechanical and Aerospace Engineering
2004-10-01
Individual and interacting effects of uniform flow, plane shear, and near-wall proximity on spherical droplet heat and mass transfer have been assessed for low Reynolds number conditions beyond the creeping flow regime. Validated resolved volume simulations were used to compute heat and mass transfer surface gradients of two-dimensional axisymmetric droplets and three-dimensional spherical droplets near planar wall boundaries for conditions consistent with inhalable aerosols (5 {<=} d {<=} 300 {mu}m) in the upper respiratory tract. Results indicate that planar shear significantly impacts droplet heat and mass transfer for shear-based Reynolds numbers greater than 1, which occur for near-wall respiratory aerosols with diameters in excess of 50 {mu}m. Wall proximity is shown to significantly enhance heat and mass transfer due to conduction and diffusion at separation distances less than five particle diameters and for small Reynolds numbers. For the Reynolds number conditions of interest, significant non-linear effects arise due to the concurrent interaction of uniform flow and shear such that linear superposition of Sherwood or Nusselt number terms is not allowable. Based on the validated numeric simulations, multivariable Sherwood and Nusselt number correlations are provided to account for individual flow characteristics and concurrent non-linear interactions of uniform flow, planar shear, and near-wall proximity. These heat and mass transfer correlations can be applied to effectively compute condensation and evaporation rates of potentially toxic or therapeutic aerosols in the upper respiratory tract, where non-uniform flow and wall proximity are expected to significantly affect droplet transport, deposition, and vapor formation. (author)
Continuous shear - a method for studying material elements passing a stationary shear plane
DEFF Research Database (Denmark)
Lindegren, Maria; Wiwe, Birgitte; Wanheim, Tarras
2003-01-01
circumferential groove. Normally shear in metal forming processes is of another nature, namely where the material elements move through a stationary shear zone, often of small width. In this paper a method enabling the simulation of this situation is presented. A tool for continuous shear has beeen manufactured...... and tested with AlMgSil and copper. The sheared material has thereafter been tested n plane strain compression with different orientation concerning the angle between the shear plane and the compression direction....
Effects of extreme wind shear on aeroelastic modal damping of wind turbines
DEFF Research Database (Denmark)
Skjoldan, P.F.; Hansen, Morten Hartvig
2013-01-01
Wind shear is an important contributor to fatigue loads on wind turbines. Because it causes an azimuthal variation in angle of attack, it can also affect aerodynamic damping. In this paper, a linearized model of a wind turbine, based on the nonlinear aeroelastic code BHawC, is used to investigate...
DNA maintenance in plastids and mitochondria of plants
Directory of Open Access Journals (Sweden)
Delene J Oldenburg
2015-10-01
Full Text Available The DNA molecules in plastids and mitochondria of plants have been studied for over 40 years. Here, we review the data on the circular or linear form, replication, repair, and persistence of the organellar DNA (orgDNA in plants. The bacterial origin of orgDNA appears to have profoundly influenced ideas about the properties of chromosomal DNA molecules in these organelles to the point of dismissing data inconsistent with ideas from the 1970s. When found at all, circular genome-sized molecules comprise a few percent of orgDNA. In cells active in orgDNA replication, most orgDNA is found as linear and branched-linear forms larger than the size of the genome, likely a consequence of a virus-like DNA replication mechanism. In contrast to the stable chromosomal DNA molecules in bacteria and the plant nucleus, the molecular integrity of orgDNA declines during leaf development at a rate that varies among plant species. This decline is attributed to degradation of damaged-but-not-repaired molecules, with a proposed repair cost-saving benefit most evident in grasses. All orgDNA maintenance activities are proposed to occur on the nucleoid tethered to organellar membranes by developmentally-regulated proteins.
Optimal energy growth in a stably stratified shear flow
Jose, Sharath; Roy, Anubhab; Bale, Rahul; Iyer, Krithika; Govindarajan, Rama
2018-02-01
Transient growth of perturbations by a linear non-modal evolution is studied here in a stably stratified bounded Couette flow. The density stratification is linear. Classical inviscid stability theory states that a parallel shear flow is stable to exponentially growing disturbances if the Richardson number (Ri) is greater than 1/4 everywhere in the flow. Experiments and numerical simulations at higher Ri show however that algebraically growing disturbances can lead to transient amplification. The complexity of a stably stratified shear flow stems from its ability to combine this transient amplification with propagating internal gravity waves (IGWs). The optimal perturbations associated with maximum energy amplification are numerically obtained at intermediate Reynolds numbers. It is shown that in this wall-bounded flow, the three-dimensional optimal perturbations are oblique, unlike in unstratified flow. A partitioning of energy into kinetic and potential helps in understanding the exchange of energies and how it modifies the transient growth. We show that the apportionment between potential and kinetic energy depends, in an interesting manner, on the Richardson number, and on time, as the transient growth proceeds from an optimal perturbation. The oft-quoted stabilizing role of stratification is also probed in the non-diffusive limit in the context of disturbance energy amplification.
Directory of Open Access Journals (Sweden)
Andaine Seguin-Orlando
Full Text Available Ancient DNA extracts consist of a mixture of endogenous molecules and contaminant DNA templates, often originating from environmental microbes. These two populations of templates exhibit different chemical characteristics, with the former showing depurination and cytosine deamination by-products, resulting from post-mortem DNA damage. Such chemical modifications can interfere with the molecular tools used for building second-generation DNA libraries, and limit our ability to fully characterize the true complexity of ancient DNA extracts. In this study, we first use fresh DNA extracts to demonstrate that library preparation based on adapter ligation at AT-overhangs are biased against DNA templates starting with thymine residues, contrarily to blunt-end adapter ligation. We observe the same bias on fresh DNA extracts sheared on Bioruptor, Covaris and nebulizers. This contradicts previous reports suggesting that this bias could originate from the methods used for shearing DNA. This also suggests that AT-overhang adapter ligation efficiency is affected in a sequence-dependent manner and results in an uneven representation of different genomic contexts. We then show how this bias could affect the base composition of ancient DNA libraries prepared following AT-overhang ligation, mainly by limiting the ability to ligate DNA templates starting with thymines and therefore deaminated cytosines. This results in particular nucleotide misincorporation damage patterns, deviating from the signature generally expected for authenticating ancient sequence data. Consequently, we show that models adequate for estimating post-mortem DNA damage levels must be robust to the molecular tools used for building ancient DNA libraries.
Model shear tests of canisters with smectite clay envelopes in deposition holes
International Nuclear Information System (INIS)
Boergesson, L.
1986-01-01
The consequences of rock displacement across a deposition hole has been investigated by some model tests. The model was scaled 1:10 to a real deposition hole. It was filled with a canister made of solid copper surrounded by highly compacted water saturated MX-80 bentonite. Before shear the swelling pressure was measured by six transducers in order to follow the water uptake process. During shear, pressure, strain, force and deformation were measured in altogether 18 points. The shearing was made at different rates in the various tests. An extensive sampling after shear was made through which the density, water content, degree of saturation, homogenization and the effect of shear on the bentonite and canister could be studied. One important conlusion from these tests was that the rate dependence is about 10% increased shear resistance per decade increased rate of shear. This resulted also in a very clear increase in strain in the canister with increased rate. The results also showed that the saturated bentonite has excellent stress distributing properties and that there is no risk of destroying the canister if the rock displacement is smaller than the thickness of the bentonite cover. The high density of the clay makes the bentonite produce such a high swelling pressure that the material will be very stiff. In the case of a larger shear deformation corresponding to ≅ 50% of the bentonite thickness the result will be a rather large deformation of the canister. A lower density would be preferable if it can be accepted with respect to other required isolating properties. The results also showed that three-dimensional FEM calculation using non-linear material properties is necessary to simulate the shear process. The rate dependence may be taken into account by adapting the properties to the actual rate of shear but might in a later stage be included in the model by giving the material viscous properties. (orig./HP)
Evolution of linear chromosomes and multipartite genomes in yeast mitochondria
Valach, Matus; Farkas, Zoltan; Fricova, Dominika; Kovac, Jakub; Brejova, Brona; Vinar, Tomas; Pfeiffer, Ilona; Kucsera, Judit; Tomaska, Lubomir; Lang, B. Franz; Nosek, Jozef
2011-01-01
Mitochondrial genome diversity in closely related species provides an excellent platform for investigation of chromosome architecture and its evolution by means of comparative genomics. In this study, we determined the complete mitochondrial DNA sequences of eight Candida species and analyzed their molecular architectures. Our survey revealed a puzzling variability of genome architecture, including circular- and linear-mapping and multipartite linear forms. We propose that the arrangement of large inverted repeats identified in these genomes plays a crucial role in alterations of their molecular architectures. In specific arrangements, the inverted repeats appear to function as resolution elements, allowing genome conversion among different topologies, eventually leading to genome fragmentation into multiple linear DNA molecules. We suggest that molecular transactions generating linear mitochondrial DNA molecules with defined telomeric structures may parallel the evolutionary emergence of linear chromosomes and multipartite genomes in general and may provide clues for the origin of telomeres and pathways implicated in their maintenance. PMID:21266473
International Nuclear Information System (INIS)
Jiquan Li; Kishimoto, Y.; Tuda, T.
2000-01-01
The separate structure of two branches of the sheared slab η i mode near the minimum-q magnetic surface is analysed and the effects of plasma rotation shears are considered in the weak magnetic shear region. Results show that the separation condition depends on the non-monotonous q profile and the deviation of rational surface from the minimum-q surface. Furthermore, it is found that the diamagnetic rotation shear may suppress the perturbation of the sheared slab η i mode at one side of the minimum-q surface, the poloidal rotation shear from the sheared E-vector x B-vector flow has a similar role to the slab mode structure when it possesses a direction same as the diamagnetic shear. A plausible interrelation between the separate structures of the two branches of the sheared slab mode and the discontinuity or gap of the radially global structure of the drift wave near the minimum-q surface observed in the toroidal particle simulation (Kishimoto Y et al 1998 Plasma Phys. Control. Fusion 40 A663) is discussed. It seems to support such a viewpoint: the double or/and global branches of the sheared slab η i mode near the minimum-q surface may become a bridge to connect the radially global structures of the drift wave at two sides of the minimum-q surface and the discontinuity may originate from the separate structures of these slab modes for a flatter q profile. (author)
Charge-density-shear-moduli relationships in aluminum-lithium alloys.
Eberhart, M
2001-11-12
Using the first principles full-potential linear-augmented-Slater-type orbital technique, the energies and charge densities of aluminum and aluminum-lithium supercells have been computed. The experimentally observed increase in aluminum's shear moduli upon alloying with lithium is argued to be the result of predictable changes to aluminum's total charge density, suggesting that simple rules may allow the alloy designer to predict the effects of dilute substitutional elements on alloy elastic response.
Self-assembled DNA Structures for Nanoconstruction
Yan, Hao; Yin, Peng; Park, Sung Ha; Li, Hanying; Feng, Liping; Guan, Xiaoju; Liu, Dage; Reif, John H.; LaBean, Thomas H.
2004-09-01
In recent years, a number of research groups have begun developing nanofabrication methods based on DNA self-assembly. Here we review our recent experimental progress to utilize novel DNA nanostructures for self-assembly as well as for templates in the fabrication of functional nano-patterned materials. We have prototyped a new DNA nanostructure known as a cross structure. This nanostructure has a 4-fold symmetry which promotes its self-assembly into tetragonal 2D lattices. We have utilized the tetragonal 2D lattices as templates for highly conductive metallic nanowires and periodic 2D protein nano-arrays. We have constructed and characterized a DNA nanotube, a new self-assembling superstructure composed of DNA tiles. We have also demonstrated an aperiodic DNA lattice composed of DNA tiles assembled around a long scaffold strand; the system translates information encoded in the scaffold strand into a specific and reprogrammable barcode pattern. We have achieved metallic nanoparticle linear arrays templated on self-assembled 1D DNA arrays. We have designed and demonstrated a 2-state DNA lattice, which displays expand/contract motion switched by DNA nanoactuators. We have also achieved an autonomous DNA motor executing unidirectional motion along a linear DNA track.
Direct test of a nonlinear constitutive equation for simple turbulent shear flows using DNS data
Schmitt, François G.
2007-10-01
Several nonlinear constitutive equations have been proposed to overcome the limitations of the linear eddy-viscosity models to describe complex turbulent flows. These nonlinear equations have often been compared to experimental data through the outputs of numerical models. Here we perform a priori analysis of nonlinear eddy-viscosity models using direct numerical simulation (DNS) of simple shear flows. In this paper, the constitutive equation is directly checked using a tensor projection which involves several invariants of the flow. This provides a 3 terms development which is exact for 2D flows, and a best approximation for 3D flows. We provide the quadratic nonlinear constitutive equation for the near-wall region of simple shear flows using DNS data, and estimate their coefficients. We show that these coefficients have several common properties for the different simple shear flow databases considered. We also show that in the central region of pipe flows, where the shear rate is very small, the coefficients of the constitutive equation diverge, indicating the failure of this representation for vanishing shears.
Self-driven particles in linear flows and trapped in a harmonic potential
Sandoval, Mario; Hidalgo-Gonzalez, Julio C.; Jimenez-Aquino, Jose I.
2018-03-01
We present analytical expressions for the mean-square displacement of self-driven particles in general linear flows and trapped in a harmonic potential. The general expressions are applied to three types of linear flows, namely, shear flow, solid-body rotation flow, and extensional flow. By using Brownian dynamics simulations, the effect of trapping and external linear flows on the particles' distribution is also elucidated. These simulations also enabled us to validate our theoretical results.
Molecular characteristics of stress overshoot for polymer melts under start-up shear flow.
Jeong, Sohdam; Kim, Jun Mo; Baig, Chunggi
2017-12-21
Stress overshoot is one of the most important nonlinear rheological phenomena exhibited by polymeric liquids undergoing start-up shear at sufficient flow strengths. Despite considerable previous research, the fundamental molecular characteristics underlying stress overshoot remain unknown. Here, we analyze the intrinsic molecular mechanisms behind the overshoot phenomenon using atomistic nonequilibrium molecular dynamics simulations of entangled linear polyethylene melts under shear flow. Through a detailed analysis of the transient rotational chain dynamics, we identify an intermolecular collision angular regime in the vicinity of the chain orientation angle θ ≈ 20° with respect to the flow direction. The shear stress overshoot occurs via strong intermolecular collisions between chains in the collision regime at θ = 15°-25°, corresponding to a peak strain of 2-4, which is an experimentally well-known value. The normal stress overshoot appears at approximately θ = 10°, at a corresponding peak strain roughly equivalent to twice that for the shear stress. We provide plausible answers to several basic questions regarding the stress overshoot, which may further help understand other nonlinear phenomena of polymeric systems.
The brittle-viscous-plastic evolution of shear bands in the South Armorican Shear Zone
Bukovská, Zita; Jeřábek, Petr; Morales, Luiz F. G.; Lexa, Ondrej; Milke, Ralf
2014-05-01
Shear bands are microscale shear zones that obliquely crosscut an existing anisotropy such as a foliation. The resulting S-C fabrics are characterized by angles lower than 45° and the C plane parallel to shear zone boundaries. The S-C fabrics typically occur in granitoids deformed at greenschist facies conditions in the vicinity of major shear zones. Despite their long recognition, mechanical reasons for localization of deformation into shear bands and their evolution is still poorly understood. In this work we focus on microscale characterization of the shear bands in the South Armorican Shear Zone, where the S-C fabrics were first recognized by Berthé et al. (1979). The initiation of shear bands in the right-lateral South Armorican Shear Zone is associated with the occurrence of microcracks crosscutting the recrystallized quartz aggregates that define the S fabric. In more advanced stages of shear band evolution, newly formed dominant K-feldspar, together with plagioclase, muscovite and chlorite occur in the microcracks, and the shear bands start to widen. K-feldspar replaces quartz by progressively bulging into the grain boundaries of recrystallized quartz grains, leading to disintegration of quartz aggregates and formation of fine-grained multiphase matrix mixture. The late stages of shear band development are marked by interconnection of fine-grained white mica into a band that crosscuts the original shear band matrix. In its extremity, the shear band widening may lead to the formation of ultramylonites. With the increasing proportion of shear band matrix from ~1% to ~12%, the angular relationship between S and C fabrics increases from ~30° to ~40°. The matrix phases within shear bands show differences in chemical composition related to distinct evolutionary stages of shear band formation. The chemical evolution is well documented in K-feldspar, where the albite component is highest in porphyroclasts within S fabric, lower in the newly formed grains within
Hu, Jiazhi; Meyers, Robin M; Dong, Junchao; Panchakshari, Rohit A; Alt, Frederick W; Frock, Richard L
2016-05-01
Unbiased, high-throughput assays for detecting and quantifying DNA double-stranded breaks (DSBs) across the genome in mammalian cells will facilitate basic studies of the mechanisms that generate and repair endogenous DSBs. They will also enable more applied studies, such as those to evaluate the on- and off-target activities of engineered nucleases. Here we describe a linear amplification-mediated high-throughput genome-wide sequencing (LAM-HTGTS) method for the detection of genome-wide 'prey' DSBs via their translocation in cultured mammalian cells to a fixed 'bait' DSB. Bait-prey junctions are cloned directly from isolated genomic DNA using LAM-PCR and unidirectionally ligated to bridge adapters; subsequent PCR steps amplify the single-stranded DNA junction library in preparation for Illumina Miseq paired-end sequencing. A custom bioinformatics pipeline identifies prey sequences that contribute to junctions and maps them across the genome. LAM-HTGTS differs from related approaches because it detects a wide range of broken end structures with nucleotide-level resolution. Familiarity with nucleic acid methods and next-generation sequencing analysis is necessary for library generation and data interpretation. LAM-HTGTS assays are sensitive, reproducible, relatively inexpensive, scalable and straightforward to implement with a turnaround time of <1 week.
International Nuclear Information System (INIS)
Steenbergh, P.H.
1979-01-01
The purpose of the investigations described is the determination of nucleotide sequences at the molecular ends of the linear adenovirus type 5 DNA. Knowledge of the primary structure at the termini of this DNA molecule is of particular interest in the study of the mechanism of replication of adenovirus DNA. The initiation- and termination sites of adenovirus DNA replication are located at the ends of the DNA molecule. (Auth.)
Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors.
Mosayebi, Majid; Louis, Ard A; Doye, Jonathan P K; Ouldridge, Thomas E
2015-12-22
The rupture of double-stranded DNA under stress is a key process in biophysics and nanotechnology. In this article, we consider the shear-induced rupture of short DNA duplexes, a system that has been given new importance by recently designed force sensors and nanotechnological devices. We argue that rupture must be understood as an activated process, where the duplex state is metastable and the strands will separate in a finite time that depends on the duplex length and the force applied. Thus, the critical shearing force required to rupture a duplex depends strongly on the time scale of observation. We use simple models of DNA to show that this approach naturally captures the observed dependence of the force required to rupture a duplex within a given time on duplex length. In particular, this critical force is zero for the shortest duplexes, before rising sharply and then plateauing in the long length limit. The prevailing approach, based on identifying when the presence of each additional base pair within the duplex is thermodynamically unfavorable rather than allowing for metastability, does not predict a time-scale-dependent critical force and does not naturally incorporate a critical force of zero for the shortest duplexes. We demonstrate that our findings have important consequences for the behavior of a new force-sensing nanodevice, which operates in a mixed mode that interpolates between shearing and unzipping. At a fixed time scale and duplex length, the critical force exhibits a sigmoidal dependence on the fraction of the duplex that is subject to shearing.
Direct observation of shear piezoelectricity in poly-l-lactic acid nanowires
Directory of Open Access Journals (Sweden)
Michael Smith
2017-07-01
Full Text Available Piezoelectric polymers are capable of interconverting mechanical and electrical energy, and are therefore candidate materials for biomedical applications such as sensors, actuators, and energy harvesters. In particular, nanowires of these materials are attractive as they can be unclamped, flexible and sensitive to small vibrations. Poly-l-lactic acid (PLLA nanowires have been investigated for their use in biological applications, but their piezoelectric properties have never been fully characterised, even though macroscopic films and fibres have been shown to exhibit shear piezoelectricity. This piezoelectric mode is particularly interesting for in vivo applications where shear forces are especially relevant, and is similar to what has been observed in natural materials such as bone and DNA. Here, using piezo-response force microscopy (PFM, we report the first direct observation of shear piezoelectricity in highly crystalline and oriented PLLA nanowires grown by a novel template-wetting method. Our results are validated using finite-element simulations and numerical analysis, which importantly and more generally allow for accurate interpretation of PFM signals in soft nanostructured materials. Our work opens up the possibility for the development of biocompatible and sustainable piezoelectric nanogenerators and sensors based on polymer nanowires.
Direct observation of shear piezoelectricity in poly-l-lactic acid nanowires
Smith, Michael; Calahorra, Yonatan; Jing, Qingshen; Kar-Narayan, Sohini
2017-07-01
Piezoelectric polymers are capable of interconverting mechanical and electrical energy, and are therefore candidate materials for biomedical applications such as sensors, actuators, and energy harvesters. In particular, nanowires of these materials are attractive as they can be unclamped, flexible and sensitive to small vibrations. Poly-l-lactic acid (PLLA) nanowires have been investigated for their use in biological applications, but their piezoelectric properties have never been fully characterised, even though macroscopic films and fibres have been shown to exhibit shear piezoelectricity. This piezoelectric mode is particularly interesting for in vivo applications where shear forces are especially relevant, and is similar to what has been observed in natural materials such as bone and DNA. Here, using piezo-response force microscopy (PFM), we report the first direct observation of shear piezoelectricity in highly crystalline and oriented PLLA nanowires grown by a novel template-wetting method. Our results are validated using finite-element simulations and numerical analysis, which importantly and more generally allow for accurate interpretation of PFM signals in soft nanostructured materials. Our work opens up the possibility for the development of biocompatible and sustainable piezoelectric nanogenerators and sensors based on polymer nanowires.
Directory of Open Access Journals (Sweden)
G. G. Didebulidze
2008-06-01
Full Text Available The formation of the mid-latitude sporadic E layers (E_{s} layers by an atmospheric vortical perturbation excited in a horizontal shear flow (horizontal wind with a horizontal linear shear is investigated. A three-dimensional atmospheric vortical perturbation (atmospheric shear waves, whose velocity vector is in the horizontal plane and has a vertical wavenumber k_{z}≠0, can provide a vertical shear of the horizontal wind. The shear waves influence the vertical transport of heavy metallic ions and their convergence into thin and dense horizontal layers. The proposed mechanism takes into account the dynamical influence of the shear wave velocity in the horizontal wind on the vertical drift velocity of the ions. It also can explain the multi-layer structure of E_{s} layers. The pattern of the multi-layer structure depends on the value of the shear-wave vertical wavelength, the ion-neutral collision frequency and the direction of the background horizontal wind. The modelling of formation of sporadic E layers with a single and a double peak is presented. Also, the importance of shear wave coupling with short-period atmospheric gravity waves (AGWs on the variations of sporadic E layer ion density is examined and discussed.
Shear Capacity of C-Shaped and L-Shaped Angle Shear Connectors.
Directory of Open Access Journals (Sweden)
Farzad Tahmasbi
Full Text Available This paper investigates the behaviour of C-shaped and L-shaped angle shear connectors embedded in solid concrete slabs. An effective finite element model is proposed to simulate the push out tests of these shear connectors that encompass nonlinear material behaviour, large displacement and damage plasticity. The finite element models are validated against test results. Parametric studies using this nonlinear model are performed to investigate the variations in concrete strength and connector dimensions. The finite element analyses also confirm the test results that increasing the length of shear connector increases their shear strength proportionately. It is observed that the maximum stress in L-shaped angle connectors takes place in the weld attachment to the beam, whereas in the C-shaped angle connectors, it is in the attached leg. The location of maximum concrete compressive damage is rendered in each case. Finally, a new equation for prediction of the shear capacity of C-shaped angle connectors is proposed.
Shear Capacity of C-Shaped and L-Shaped Angle Shear Connectors
Tahmasbi, Farzad; Maleki, Shervin; Shariati, Mahdi; Ramli Sulong, N. H.; Tahir, M. M.
2016-01-01
This paper investigates the behaviour of C-shaped and L-shaped angle shear connectors embedded in solid concrete slabs. An effective finite element model is proposed to simulate the push out tests of these shear connectors that encompass nonlinear material behaviour, large displacement and damage plasticity. The finite element models are validated against test results. Parametric studies using this nonlinear model are performed to investigate the variations in concrete strength and connector dimensions. The finite element analyses also confirm the test results that increasing the length of shear connector increases their shear strength proportionately. It is observed that the maximum stress in L-shaped angle connectors takes place in the weld attachment to the beam, whereas in the C-shaped angle connectors, it is in the attached leg. The location of maximum concrete compressive damage is rendered in each case. Finally, a new equation for prediction of the shear capacity of C-shaped angle connectors is proposed. PMID:27478894
Shear flow driven counter rotating vortices in an inhomogeneous dusty magnetoplasma
Masood, W.; Mirza, Arshad M.; Ijaz, Aisha; Haque, Q.
2014-02-01
The coupling of Shukla-Varma (SV) and convective cell modes is discussed in the presence of non-Boltzmannian electron response and parallel equilibrium shear flow. In the linear case, a new dispersion relation is derived and analyzed. It is found that the coupled SV and convective cell modes destabilize in the presence of electron shear flow. On the other hand, in the nonlinear regime, it is shown that Shukla-Varma mode driven counter rotating vortices can be formed for the system under consideration. It is found that these vortices move slowly by comparison with the ion acoustic or electron drift-wave driven counter rotating vortices. The relevance of the present investigation with regard to space plasmas is also pointed out.
Energy Technology Data Exchange (ETDEWEB)
Rösner, Harald, E-mail: rosner@uni-muenster.de [Institut für Materialphysik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 10, D-48149 Münster (Germany); Peterlechner, Martin [Institut für Materialphysik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 10, D-48149 Münster (Germany); Kübel, Christian [Karlsruhe Institute of Technology (KIT), Institute of Nanotechnology (INT), Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen (Germany); Karlsruhe Nano Micro Facility (KNMF), Karlsruhe Institute of Technology (KIT), D-76344 Eggenstein-Leopoldshafen (Germany); Schmidt, Vitalij [Institut für Materialphysik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 10, D-48149 Münster (Germany); Wilde, Gerhard [Institut für Materialphysik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 10, D-48149 Münster (Germany); Institute of Nanochemistry and Nanobiology, School of Environmental and Chemical Engineering, Shanghai University, Shanghai 200444 (China)
2014-07-01
Density changes between sheared zones and their surrounding amorphous matrix as a result of plastic deformation in a cold-rolled metallic glass (melt-spun Al{sub 88}Y{sub 7}Fe{sub 5}) were determined using high-angle annular dark-field (HAADF) detector intensities supplemented by electron-energy loss spectroscopy (EELS), energy-dispersive X-ray (EDX) and nano-beam diffraction analyses. Sheared zones or shear bands were observed as regions of bright or dark contrast arising from a higher or lower density relative to the matrix. Moreover, abrupt contrast changes from bright to dark and vice versa were found within individual shear bands. We associate the decrease in density mainly with an enhanced free volume in the shear bands and the increase in density with concomitant changes of the mass. This interpretation is further supported by changes in the zero loss and Plasmon signal originating from such sites. The limits of this new approach are discussed. - Highlights: • We describe a novel approach for measuring densities in shear bands of metallic glasses. • The linear relation of the dark-field intensity I/I{sub 0} and the mass thickness ρt was used. • Individual shear bands showed abrupt contrast changes from bright to dark and vice versa. • Density changes ranging from about −10% to +6% were found for such shear bands. • Mixtures of amorphous/medium range ordered domains were found within the shear bands.
Zevallos, E.; Hassanein, M.F.; Real Saladrigas, Esther; Mirambell Arrizabalaga, Enrique
2016-01-01
Because of public construction budgets were cut over the last few years, new bridge girders with corrugated webs to reduce the construction costs have become more widely studied and used. In spite that tapered bridge girders with corrugated webs (BGCWs) are used in modern bridges, their shear strength and behaviour rarely exists in literature. Based on available literature, the web of the linearly tapered BGCWs may be divided into three typologies with different structural response to shear f...
Plasticity Approach to Shear Design
DEFF Research Database (Denmark)
Hoang, Cao Linh; Nielsen, Mogens Peter
1998-01-01
The paper presents some plastic models for shear design of reinforced concrete beams. Distinction is made between two shear failure modes, namely web crushing and crack sliding. The first mentioned mode is met in beams with large shear reinforcement degrees. The mode of crack sliding is met in non......-shear reinforced beams as well as in lightly shear reinforced beams. For such beams the shear strength is determined by the recently developed crack sliding model. This model is based upon the hypothesis that cracks can be transformed into yield lines, which have lower sliding resistance than yield lines formed...... in uncracked concrete. Good agree between theory and tests has been found.Keywords: dsign, plasticity, reinforced concrete, reinforcement, shear, web crushing....
Turbulence suppression by E x B shear in JET optimized shear pulses
International Nuclear Information System (INIS)
Beer, M.A.; Budny, R.V.; Challis, C.D.; Conway, G.
2000-01-01
The authors calculate microinstability growth rates in JET optimized shear plasmas with a comprehensive gyrofluid model, including sheared E x B flows, trapped electrons, and all dominant ion species in realistic magnetic geometry. They find good correlation between E x B shear suppression of microinstabilities and both the formation and collapse of the internal transport barrier
Shear Strains, Strain Rates and Temperature Changes in Adiabatic Shear Bands
1980-05-01
X14A. It has been found that when bainitic and martensitic steels are sheared adiabatically, a layer of material within ths shear zone is altezed and...Sooiety for Metals, Metals Park, Ohio, 1978, pp. 148-0. 21 TABLE II SOLID-STATE TRANSFORMATIONS IN BAINITIC STEEL TRANSFORMATION TRANSFORMATION...shear, thermoplastic, plasticity, plastic deformation, armor, steel IL AnSRACT ( -=nba asoa.tm a naeoesM iN faity by bleak n bet/2972 Experiments
DEFF Research Database (Denmark)
Register, JC; Christiansen, Gunna; Griffith, J
1987-01-01
examined by electron microscopy: supertwisted double-stranded (ds) DNA and linear single-stranded (ss) DNA, linear dsDNA and circular ssDNA, and linear dsDNA and colinear ssDNA. Several major observations were: (i) with RecA protein bound to the DNA, plectonemic joints were ultrastructurally...
Shearing of saturated clays in rock joints at high confining pressures
International Nuclear Information System (INIS)
Wang, C.; Mao, N.
1979-01-01
Saturated clays are sheared between rock joints at various pore water pressures and at confining pressures up to 3 kb (300 Mpa). Sliding on these joints is stable. For a given clay, the shear stress required to initiate sliding increases linearly with the effective normal stress across the sliding surface, with a slope of 0.08 +- 0.01 for joints filled with saturated montmorillonite, 0.12 +- 0.01 with saturated chlorite, 0.15 +- 0.01 with saturated kaolinite, and 0.22 +- 0.02 with saturated silty illite. Thus at high confining pressures the shear stress required to initiate sliding on joints filled with saturated clays are very much smaller than that required to initiate sliding on clean rock joints or on joints filled with dry gouge materials. In the crust, saturation of gouge materials along active faults would greatly lower the frictional resistance to faulting and would stabilize fault movement. Different fault behaviors such as stable creep along some faults and intermittent but sudden slip along others may reflect in part different degrees of saturation of fault zones at depth
Conserved linear dynamics of single-molecule Brownian motion
Serag, Maged F.
2017-06-06
Macromolecular diffusion in homogeneous fluid at length scales greater than the size of the molecule is regarded as a random process. The mean-squared displacement (MSD) of molecules in this regime increases linearly with time. Here we show that non-random motion of DNA molecules in this regime that is undetectable by the MSD analysis can be quantified by characterizing the molecular motion relative to a latticed frame of reference. Our lattice occupancy analysis reveals unexpected sub-modes of motion of DNA that deviate from expected random motion in the linear, diffusive regime. We demonstrate that a subtle interplay between these sub-modes causes the overall diffusive motion of DNA to appear to conform to the linear regime. Our results show that apparently random motion of macromolecules could be governed by non-random dynamics that are detectable only by their relative motion. Our analytical approach should advance broad understanding of diffusion processes of fundamental relevance.
Conserved linear dynamics of single-molecule Brownian motion
Serag, Maged F.; Habuchi, Satoshi
2017-06-01
Macromolecular diffusion in homogeneous fluid at length scales greater than the size of the molecule is regarded as a random process. The mean-squared displacement (MSD) of molecules in this regime increases linearly with time. Here we show that non-random motion of DNA molecules in this regime that is undetectable by the MSD analysis can be quantified by characterizing the molecular motion relative to a latticed frame of reference. Our lattice occupancy analysis reveals unexpected sub-modes of motion of DNA that deviate from expected random motion in the linear, diffusive regime. We demonstrate that a subtle interplay between these sub-modes causes the overall diffusive motion of DNA to appear to conform to the linear regime. Our results show that apparently random motion of macromolecules could be governed by non-random dynamics that are detectable only by their relative motion. Our analytical approach should advance broad understanding of diffusion processes of fundamental relevance.
Conserved linear dynamics of single-molecule Brownian motion
Serag, Maged F.; Habuchi, Satoshi
2017-01-01
Macromolecular diffusion in homogeneous fluid at length scales greater than the size of the molecule is regarded as a random process. The mean-squared displacement (MSD) of molecules in this regime increases linearly with time. Here we show that non-random motion of DNA molecules in this regime that is undetectable by the MSD analysis can be quantified by characterizing the molecular motion relative to a latticed frame of reference. Our lattice occupancy analysis reveals unexpected sub-modes of motion of DNA that deviate from expected random motion in the linear, diffusive regime. We demonstrate that a subtle interplay between these sub-modes causes the overall diffusive motion of DNA to appear to conform to the linear regime. Our results show that apparently random motion of macromolecules could be governed by non-random dynamics that are detectable only by their relative motion. Our analytical approach should advance broad understanding of diffusion processes of fundamental relevance.
Tam, Byron; Bollu, Prashanti; Chaudhry, Kishore; Subramani, Karthikeyan
2017-10-01
The purpose of this study was to determine the influence of linear and rotational pre-cure bracket displacement during the bonding procedure on shear bond strength (SBS) of orthodontic brackets. Stainless steel orthodontic premolar brackets were bonded to the buccal surfaces of 50 human pre-molars with a conventional two-step bonding protocol. Extracted human pre-molars were divided into 5 groups (n=10/group). In the Control Group, the brackets were bonded with no pre-cure bracket displacement or rotation. The Rotation Group was bonded with 45 degrees of pre-cure rotation. The Displacement Group was bonded with 2mm pre-cure linear displacement. The Rotation-Displacement Group was bonded with pre-cure movements of 45º counter-clockwise rotation and 2mm displacement. The Slippage Group was bonded with 2mm each of mesial and distal pre-cure linear displacement. Photo-activation was carried out on the lateral sides of the bracket. Shear debonding force was measured, 24 hours after initial bonding, with an Instron universal testing machine using a knife-edged chisel. Data was analyzed using one-way ANOVA test. Adhesive Remnant Index (ARI) was scored under 15x magnification. The ARI data was analyzed using the Chi-square test ( p -value bracket displacements do not appear to effect the shear bond strength of orthodontic brackets. Key words: Shear bond strength, orthodontic bracket, displacement, rotation, adhesive remnant index, pre-cure movement.
Testing and modeling dowel and catenary action in rebars crossing shear joints in RC
DEFF Research Database (Denmark)
Sørensen, Jesper Harrild; Hoang, Linh Cao; Olesen, John Forbes
2017-01-01
presents a simple, second order plasticity model to describe the non-linear regime of the load-displacement relationship. In the model, kinematic relations and the normality condition of plastic theory are utilized to establish a unique link between the imposed shear displacement and combinations of moment...
On the stability of shear-Alfven vortices
International Nuclear Information System (INIS)
Jovanovic, D.; Horton, W.
1993-08-01
Linear stability of shear-Alfven vortices is studied analytically using the Lyapunov method. Instability is demonstrated for vortices belonging to the drift mode, which is a generalization of the standard Hasegawa-Mima vortex to the case of large parallel phase velocities. In the case of the convective-cell mode, short perpendicular-wavelength perturbations are stable for a broad class of vortices. Eventually, instability of convective-cell vortices may occur on the perpendicular scale comparable with the vortex size, but it is followed by a simultaneous excitation of coherent structures with better localization than the original vortex
International Nuclear Information System (INIS)
Khonik, Vitaly A.; Kobelev, N. P.
2008-01-01
It has been shown that first-order irreversible structural relaxation with distributed activation energies must lead to a linear decrease of the logarithm of Newtonian shear viscosity with the logarithm of heating rate upon linear heating of glass. Such a behavior is indeed observed in the experiments on metallic glasses. Structural relaxation-induced viscous flow leads to infra-low-frequency Maxwell viscoelastic internal friction, which is predicted to increase with the heating rate
Scaling of turbulence spectra measured in strong shear flow near the Earth’s surface
DEFF Research Database (Denmark)
Mikkelsen, Torben Krogh; Larsen, Søren Ejling; Ejsing Jørgensen, Hans
2017-01-01
Within the lowest kilometer of the Earth's atmosphere, in the so-called atmospheric boundary layer, winds are often gusty and turbulent. Nearest to the ground, the turbulence is predominately generated by mechanical wall-bounded wind shear, whereas at higher altitudes turbulent mixing of heat...... subrange with a distinct inverse-linear power law for turbulence in a strongly sheared high-Reynolds number wall-bounded flow, as is encountered in the lowest sheared part of the atmospheric boundary layer, also known as the eddy surface layer. This paper presents observations of spectra measured...... and moisture also play a role. The variance (square of the standard deviation) of the fluctuation around the mean wind speed is a measure of the kinetic energy content of the turbulence. This kinetic energy can be resolved into the spectral distributions, or spectra, as functions of eddy size, wavenumber...
Expressing the equation of state parameter in terms of the three dimensional cosmic shear
International Nuclear Information System (INIS)
Levy, Daniel; Brustein, Ram
2009-01-01
We study the functional dependence of the spin-weighted angular moments of the two-point correlation function of the three dimensional cosmic shear on the expansion history of the universe. We first express the redshift dependent total equation of state parameter in terms of the growing mode of the gauge invariant metric perturbation in the conformal-Newtonian gauge for the case of adiabatic perturbations. We then express the redshift dependent angular moments of the shear two-point correlation function as an integral in terms of the metric perturbation. We present the final explicit expression for the case of a Harrison-Zeldovich spectrum of primordial perturbations. Our analysis is restricted to the linear regime. We use our results to make a preliminary study of the required sensitivity that will allow cosmic shear observations to add significant information about the expansion history of the universe
Gusnaniar, Niar; Sjollema, Jelmer; Jong, Ed D; Woudstra, Willem; de Vries, Joop; Nuryastuti, Titik; van der Mei, Henny C; Busscher, Henk J
2017-11-01
In real-life situations, bacteria are often transmitted from biofilms growing on donor surfaces to receiver ones. Bacterial transmission is more complex than adhesion, involving bacterial detachment from donor and subsequent adhesion to receiver surfaces. Here, we describe a new device to study shear-induced bacterial transmission from a (stainless steel) pipe to a (silicone rubber) tube and compare transmission of EPS-producing and non-EPS-producing staphylococci. Transmission of an entire biofilm from the donor to the receiver tube did not occur, indicative of cohesive failure in the biofilm rather than of adhesive failure at the donor-biofilm interface. Biofilm was gradually transmitted over an increasing length of receiver tube, occurring mostly to the first 50 cm of the receiver tube. Under high-shearing velocity, transmission of non-EPS-producing bacteria to the second half decreased non-linearly, likely due to rapid thinning of the lowly lubricious biofilm. Oppositely, transmission of EPS-producing strains to the second tube half was not affected by higher shearing velocity due to the high lubricity and stress relaxation of the EPS-rich biofilms, ensuring continued contact with the receiver. The non-linear decrease of ongoing bacterial transmission under high-shearing velocity is new and of relevance in for instance, high-speed food slicers and food packaging. © 2017 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.
Uniqueness theorems in linear elasticity
Knops, Robin John
1971-01-01
The classical result for uniqueness in elasticity theory is due to Kirchhoff. It states that the standard mixed boundary value problem for a homogeneous isotropic linear elastic material in equilibrium and occupying a bounded three-dimensional region of space possesses at most one solution in the classical sense, provided the Lame and shear moduli, A and J1 respectively, obey the inequalities (3 A + 2 J1) > 0 and J1>O. In linear elastodynamics the analogous result, due to Neumann, is that the initial-mixed boundary value problem possesses at most one solution provided the elastic moduli satisfy the same set of inequalities as in Kirchhoffs theorem. Most standard textbooks on the linear theory of elasticity mention only these two classical criteria for uniqueness and neglect altogether the abundant literature which has appeared since the original publications of Kirchhoff. To remedy this deficiency it seems appropriate to attempt a coherent description ofthe various contributions made to the study of uniquenes...
Shear jamming: where does it come from and how is it affected by particle properties?
Wang, Dong
Granular systems have been shown to be able to behave like solids, under shear, even when their densities are below the critical packing fraction for frictionless isotropic jamming. To understand such a phenomena, called shear jamming, the questions we address here is: how does shear bring a system from a unjammed state to a jammed state and how do particle properties, such as inter-particle friction and particle shape, affect shear jamming? Since Z can be used to distinguish jammed states from unjammed ones (Z = 3 is the isotropic jamming point for 2 D frictional disks), it is vital to understand how shear increases Z. In the first part of this talk, we propose a set of three particles in contact, denoted as a trimer, as the basic unit to microscopically characterize the deformation of the system. Trimers, stabilized by inter-grain friction, are then expected to bend in response to shear to make extra contacts to regain stability. By defining a projection operator of the opening angle of the trimer to the compression direction in the shear, O, we see a systematically linear decrease of this quantity with respect to shear strain, demonstrating the bending of trimers as expected. In the second part of this talk, we look into the effect of particle properties on shear jamming. Photoelastic disks either wrapped with Teflon to reduce friction or with fine teeth on the edge to increase friction are used to study the effect of friction. In addition, disks are replaced with ellipses to introduce anisotropy into the particle shape. Shear jamming is observed for all the cases. For the disk system, the lowest packing fraction that can reach a shear jammed state increases with friction. For the ellipse system, shear brings the system to a more ordered state and particles tend to align to a certain angle relative to the principal directions of shear, regardless of packing fraction. Support by NSF DMR1206351, NASA NNX15AD38G, the W. M. Keck Foundation and a Triangle MRSEC
Blood extracellular DNA after irradiation
International Nuclear Information System (INIS)
Vladimirov, V.G.; Tishchenko, L.I.; Surkova, E.A.; Vasil'eva, I.N.
1993-01-01
It has been shown that blood extracellular DNA of irradiated rats largely consists of the low-molecular DNA and its oligomers. Molecular masses of oligomers are multiple to molecular mass of monomer fragment with nucleosome size. The low-molecular DNA has linear form. The average content of GC-pairs in low-molecular DNA is higher than in total rat's DNA (48.5% against 41.5%). The low-molecular DNA is a part of complex containing RNA, acidic proteins and lipids. It is assumed that the formation of low-molecular DNA is a result of Ca/Mg - dependent nuclear endonuclease action
Elimination Voltammetry with Linear Scan as a New Detection Method for DNA Sensors
Directory of Open Access Journals (Sweden)
Rene Kizek
2005-11-01
Full Text Available The paper describes successful coupling of adsorptive transfer stripping (AdTS andelimination voltammetry with linear scan (EVLS for the resolution of reduction signals of cytosine (Cand adenine (A residues in hetero-oligodeoxynucleotides (ODNs. Short ODNs (9-mers and 20-merswere adsorbed from a small volume on a hanging mercury drop electrode (HMDE. After washing ofthe ODN-modified electrode by water and its transferring to an electrochemical cell, voltammetric curves were measured. The AdTS EVLS was able to determine of C/A ratio of ODNs through theelimination function conserving the diffusion current component and eliminating kinetic and chargingcurrent components. This function, which provides the elimination signal in a peak-counterpeak form,increased the current sensitivity for A and C resolution, and for the recognition of bases sequences inODN chains. Optimal conditions of elimination experiments such as pH, time of adsorption, and scanrate were found. The combination of EVLS with AdTS procedure can be considered as a newdetection method in a DNA sensor.
Visco-instability of shear viscoelastic collisional dusty plasma systems
Mahdavi-Gharavi, M.; Hajisharifi, K.; Mehidan, H.
2018-04-01
In this paper, the stability of Newtonian and non-Newtonian viscoelastic collisional shear-velocity dusty plasmas is studied, using the framework of a generalized hydrodynamic (GH) model. Motivated by Banerjee et al.'s work (Banerjee et al., New J. Phys., vol. 12 (12), 2010, p. 123031), employing linear perturbation theory as well as the local approximation method in the inhomogeneous direction, the dispersion relations of the Fourier modes are obtained for Newtonian and non-Newtonian dusty plasma systems in the presence of a dust-neutral friction term. The analysis of the obtained dispersion relation in the non-Newtonian case shows that the inhomogeneous viscosity force depending on the velocity shear profile can be the genesis of a free energy source which leads the shear system to be unstable. Study of the dust-neutral friction effect on the instability of the considered systems using numerical analysis of the dispersion relation in the Newtonian case demonstrates that the maximum growth rate decreases considerably by increasing the collision frequency in the hydrodynamic regime, while this reduction can be neglected in the kinetic regime. Results show a more significant stabilization role of the dust-neutral friction term in the non-Newtonian cases, through decreasing the maximum growth rate at any fixed wavenumber and construction of the instable wavenumber region. The results of the present investigation will greatly contribute to study of the time evolution of viscoelastic laboratory environments with externally applied shear; where in these experiments the dust-neutral friction process can play a considerable role.
Energy Technology Data Exchange (ETDEWEB)
Choi, Se Bin; Lee, Joon Sang [Dept. of Mechanical Engineering, Yonsei Unversity, Seoul (Korea, Republic of)
2015-08-15
We simulate an emulsion system under simple shear rates to analyze its rheological characteristics using the lattice Boltzmann method (LBM). We calculate the relative viscosity of an emulsion under a simple shear flow along with changes in temperature, shear rate, and surfactant concentration. The relative viscosity of emulsions decreased with an increase in temperature. We observed the shear-thinning phenomena, which is responsible for the inverse proportion between the shear rate and viscosity. An increase in the interfacial tension caused a decrease in the relative viscosity of the decane-in-water emulsion because the increased deformation caused by the decreased interfacial tension significantly influenced the wall shear stress.
Radiation damage of DNA. Model for direct ionization of DNA
International Nuclear Information System (INIS)
Kobayashi, Kazuo; Tagawa, Seiichi
2004-01-01
Current aspects of radiation damage of DNA, particularly induced by the direct effect of radiation, and author's method of pulse radiolysis are described in relation to behavior of ions formed by radiation and active principles to induce the strand break. In irradiation of DNA solution in water, the direct effect of radiation is derived from ionization of DNA itself and indirect one, from the reaction between DNA and radicals generated from water molecules and the former direct one has been scarcely investigated due to difficulty of experimental approach. Radicals generated in sugar moiety of DNA are shown important in the strand break by recent studies on crystalline DNA irradiated by X-ray, DNA solution by electron and photon beams, hydrated DNA by γ-ray and by high linear energy transfer (LET) ion. Author's pulse radiolysis studies have revealed behaviors of guanine and adenine radical cations in dynamics of DNA oxidation. Since reactions described are the model, the experimental approach is thought necessary for elucidation of the actually occurring DNA damage in living cells. (N.I.)
Programmable motion of DNA origami mechanisms.
Marras, Alexander E; Zhou, Lifeng; Su, Hai-Jun; Castro, Carlos E
2015-01-20
DNA origami enables the precise fabrication of nanoscale geometries. We demonstrate an approach to engineer complex and reversible motion of nanoscale DNA origami machine elements. We first design, fabricate, and characterize the mechanical behavior of flexible DNA origami rotational and linear joints that integrate stiff double-stranded DNA components and flexible single-stranded DNA components to constrain motion along a single degree of freedom and demonstrate the ability to tune the flexibility and range of motion. Multiple joints with simple 1D motion were then integrated into higher order mechanisms. One mechanism is a crank-slider that couples rotational and linear motion, and the other is a Bennett linkage that moves between a compacted bundle and an expanded frame configuration with a constrained 3D motion path. Finally, we demonstrate distributed actuation of the linkage using DNA input strands to achieve reversible conformational changes of the entire structure on ∼ minute timescales. Our results demonstrate programmable motion of 2D and 3D DNA origami mechanisms constructed following a macroscopic machine design approach.
Programmable motion of DNA origami mechanisms
Marras, Alexander E.; Zhou, Lifeng; Su, Hai-Jun; Castro, Carlos E.
2015-01-01
DNA origami enables the precise fabrication of nanoscale geometries. We demonstrate an approach to engineer complex and reversible motion of nanoscale DNA origami machine elements. We first design, fabricate, and characterize the mechanical behavior of flexible DNA origami rotational and linear joints that integrate stiff double-stranded DNA components and flexible single-stranded DNA components to constrain motion along a single degree of freedom and demonstrate the ability to tune the flexibility and range of motion. Multiple joints with simple 1D motion were then integrated into higher order mechanisms. One mechanism is a crank–slider that couples rotational and linear motion, and the other is a Bennett linkage that moves between a compacted bundle and an expanded frame configuration with a constrained 3D motion path. Finally, we demonstrate distributed actuation of the linkage using DNA input strands to achieve reversible conformational changes of the entire structure on ∼minute timescales. Our results demonstrate programmable motion of 2D and 3D DNA origami mechanisms constructed following a macroscopic machine design approach. PMID:25561550
Vâgberg, Daniel; Olsson, Peter; Teitel, S.
2017-05-01
We report on numerical simulations of simple models of athermal, bidisperse, soft-core, massive disks in two dimensions, as a function of packing fraction ϕ , inelasticity of collisions as measured by a parameter Q , and applied uniform shear strain rate γ ˙. Our particles have contact interactions consisting of normally directed elastic repulsion and viscous dissipation, as well as tangentially directed viscous dissipation, but no interparticle Coulombic friction. Mapping the phase diagram in the (ϕ ,Q ) plane for small γ ˙, we find a sharp first-order rheological phase transition from a region with Bagnoldian rheology to a region with Newtonian rheology, and show that the system is always Newtonian at jamming. We consider the rotational motion of particles and demonstrate the crucial importance that the coupling between rotational and translational degrees of freedom has on the phase structure at small Q (strongly inelastic collisions). At small Q , we show that, upon increasing γ ˙, the sharp Bagnoldian-to-Newtonian transition becomes a coexistence region of finite width in the (ϕ ,γ ˙) plane, with coexisting Bagnoldian and Newtonian shear bands. Crossing this coexistence region by increasing γ ˙ at fixed ϕ , we find that discontinuous shear thickening can result if γ ˙ is varied too rapidly for the system to relax to the shear-banded steady state corresponding to the instantaneous value of γ ˙.
Deformation localization at the tips of shear fractures: An analytical approach
Misra, Santanu
2011-04-01
Mechanical heterogeneities are important features in rocks which trigger deformation localization in brittle, ductile or brittle-ductile modes during deformation. In a recent study Misra et al. (2009) have investigated these different processes of deformation localization at the tips of pre-existing planar shear fractures. The authors identified four mechanisms of deformation, ranging from brittle to ductile, operating at the crack tips. Mechanism A: brittle deformation is the dominant process that forms a pair of long tensile fractures at the two crack tips. Mechanism B: nature of deformation is mixed where the tensile fractures grow to a finite length with incipient plastic deformation at the tips. Mechanism C: mixed mode deformation characterized by dominating macro-scale shear bands, and short, opened-out tensile fissures. Mechanism D: localization of plastic bands in the form of a pair of shear bands at each tip without any discernible brittle fracturing. The transition of the mechanisms is a function of orientation ( α) of the crack with respect to the bulk compression direction and the finite length ( l) of the crack. The aim of this study is to present a theoretical analysis to account for the variability of deformation localization in the vicinity of pre-existing shear cracks considering an elastic-plastic rheological model. The analysis calculates the principal tensile stress ( σ1) and the second stress invariant ( I2) of the stress field at the fracture tip to explain the transition from Mechanism A (tensile fracturing) to Mechanism D (ductile strain). The results show that σ1 at the fracture tip increases non-linearly with increasing α and Ar (aspect ratio of the shear crack), and assumes a large value when α > 50 o, promoting tensile fractures. On the other hand, I2 is a maximum at α < 45°, resulting in nucleation of ductile shear bands.
Avalanche weak layer shear fracture parameters from the cohesive crack model
McClung, David
2014-05-01
Dry slab avalanches release by mode II shear fracture within thin weak layers under cohesive snow slabs. The important fracture parameters include: nominal shear strength, mode II fracture toughness and mode II fracture energy. Alpine snow is not an elastic material unless the rate of deformation is very high. For natural avalanche release, it would not be possible that the fracture parameters can be considered as from classical fracture mechanics from an elastic framework. The strong rate dependence of alpine snow implies that it is a quasi-brittle material (Bažant et al., 2003) with an important size effect on nominal shear strength. Further, the rate of deformation for release of an avalanche is unknown, so it is not possible to calculate the fracture parameters for avalanche release from any model which requires the effective elastic modulus. The cohesive crack model does not require the modulus to be known to estimate the fracture energy. In this paper, the cohesive crack model was used to calculate the mode II fracture energy as a function of a brittleness number and nominal shear strength values calculated from slab avalanche fracture line data (60 with natural triggers; 191 with a mix of triggers). The brittleness number models the ratio of the approximate peak value of shear strength to nominal shear strength. A high brittleness number (> 10) represents large size relative to fracture process zone (FPZ) size and the implications of LEFM (Linear Elastic Fracture Mechanics). A low brittleness number (e.g. 0.1) represents small sample size and primarily plastic response. An intermediate value (e.g. 5) implies non-linear fracture mechanics with intermediate relative size. The calculations also implied effective values for the modulus and the critical shear fracture toughness as functions of the brittleness number. The results showed that the effective mode II fracture energy may vary by two orders of magnitude for alpine snow with median values ranging from 0
Energy Technology Data Exchange (ETDEWEB)
Setyawan, Paryanto Dwi, E-mail: paryanto-ds@yahoo.com; Sugiman,; Saputra, Yudhi [Department of Mechanical Engineering, Faculty of Engineering, University of Mataram, Mataram, West Nusa Tenggara (Indonesia)
2016-03-29
The paper presents the compressive and the short beam shear strength of a sandwich composite with opened cell foam made of bamboo fiber as the core and plywood as the skins. The core thickness was varied from 10 mm to 40 mm keeping the volume fraction of fiber constant. Several test s were carried out including the core density, flatwise compressive and the short beam shear testing in three point bending. The results show that the density of bamboo opened cell foam is comparable with commercial plastic foam, such as polyurethane foam. The compressive strength tends to increase linearly with increasing the core thickness. The short beam shear failure load of the sandwich composite increases with the increase of core thickness, however on the contrary, the short beam shear strength which tends to sharply decrease from the thickness of 10 mm to 30 mm and then becomes flat.
Biomechanics of P-selectin PSGL-1 bonds: Shear threshold and integrin-independent cell adhesion
Energy Technology Data Exchange (ETDEWEB)
Xiao, Zhihua; Goldsmith, Harry L.; MacIntosh, Fiona A.; Shankaran, Harish; Neelamegham, Sriram
2006-03-01
Platelet-leukocyte adhesion may contribute to thrombosis and inflammation. We examined the heterotypic interaction between unactivated neutrophils and either thrombin receptor activating peptide (TRAP) stimulated platelets or P-selectin bearing beads (Ps-beads) in suspension. Cone-plate viscometers were used to apply controlled shear rates from 14-3000/s. Platelet-neutrophil and bead-neutrophil adhesion analysis was performed using both flow cytometry and high-speed videomicroscopy. We observed that while blocking antibodies against either P-selectin or P-selectin glycoprotein ligand-1 (PSGL-1) alone inhibited platelet-neutrophil adhesion by ~60% at 140/s, these reagents completely blocked adhesion at 3000/s. Anti-Mac-1 alone did not alter platelet-neutrophil adhesion rates at any shear rate, though in synergy with selectin antagonists it abrogated cell binding. Unstimulated neutrophils avidly bound Ps-beads and activated platelets in an integrin-independent manner, suggesting that purely selectin-dependent cell adhesion is possible. In support of this, antagonists against P-selectin or PSGL-1 dissociated previously formed platelet-neutrophil and Ps-bead neutrophil aggregates under shear in a variety of experimental systems, including in assays performed with whole blood. In studies where medium viscosity and shear rate were varied, a subtle shear threshold for P-selectin PSGL-1 binding was also noted at shear rates<100/s and at force loading rates of ~300pN/sec. Results are discussed in light of biophysical computations that characterize the collision between unequal size particles in linear shear flow. Overall, our studies reveal an integrin-independent regime for cell adhesion that may be physiologically relevant.
Kim, Sang-Hyo; Kim, Kun-Soo; Lee, Do-Hoon; Park, Jun-Seung; Han, Oneil
2017-11-22
Shear connectors are used in steel beam-concrete slabs of composite frame and bridge structures to transfer shear force according to design loads. The existing Y-type perfobond rib shear connectors are designed for girder slabs of composite bridges. Therefore, the rib and transverse rebars of the conventional Y-type perfobond rib shear connectors are extremely large for the composite frames of building structures. Thus, this paper proposes stubby Y-type perfobond rib shear connectors, redefining the existing connectors, for composite frames of building structures; these were used to perform push-out tests. These shear connectors have relatively small ribs compared to the conventional Y-type perfobond rib shear connectors. To confirm the shear resistance of these stubby shear connectors, we performed an experiment by using transverse rebars D13 and D16. The results indicate that these shear connectors have suitable shear strength and ductility for application in composite frame structures. The shear strengths obtained using D13 and D16 were not significantly different. However, the ductility of the shear connectors with D16 was 45.1% higher than that of the shear connectors with D13.
Electrical conductivity and shear viscosity of quark gluon plasma in a quasiparticle model
International Nuclear Information System (INIS)
Srivastava, P.K.; Mohanty, B.
2014-01-01
Relativistic heavy-ion collisions (HIC) have reported the formation of a strongly coupled quark gluon plasma (sQGP). To study the properties of this sQGP is the main focus nowadays. Among these the shear viscosity (η) and electrical conductivity (σ el ) could reflect the transport properties of the medium. By studying the shear viscosity or more specifically shear viscosity to entropy density ratio (η/s), one can understand the nature of interactions among the constituents of the produced medium, it gives a measure of the fluidity. Electrical conductivity represents the linear response of the system to an applied external electric field. The basic question one could ask is that whether the matter created at heavy ion collision experiment is an electrical conductor or an insulator. Recent lattice QCD as well as phenomenological studies have shown that these transport quantities show some kind of minimum in its variation with respect to temperature near the temperature corresponding to the transition from hadronic phase to quark-gluon phase
Synthesis, Characterization and DNA Cleavage of Copper(II ...
African Journals Online (AJOL)
Purpose: To study deoxyribonucleic acid (DNA) shearing capability of copper(II) complex of dithiothreitol (DTT) and to fevaluate its potential application in cancer therapy. Methods: A parrot green complex was synthesized by grinding copper acetate monohydrate and DTT in 1:2 molar ratio in a mortar until no fumes of acetic ...
Comparison of direct shear and simple shear responses of municipal solid waste in USA
Fei, Xunchang; Zekkos, Dimitrios
2017-01-01
Although large-size simple shear (SS) testing of municipal solid waste (MSW) may arguably provide a more realistic estimate of the shear strength (τ ) of MSW than the most commonly used direct shear (DS) testing, a systematic comparison between
Adenovirus type 5 DNA-protein complexes from formaldehyde cross-linked cells early after infection
International Nuclear Information System (INIS)
Spector, David J.; Johnson, Jeffrey S.; Baird, Nicholas L.; Engel, Daniel A.
2003-01-01
We report here the properties of viral DNA-protein complexes that purify with cellular chromatin following formaldehyde cross-linking of intact cells early after infection. The cross-linked viral DNA fractionated into shear-sensitive (S) and shear- resistant (R) components that were separable by sedimentation, which allowed independent characterization. The R component had the density and sedimentation properties expected for DNA-protein complexes and contained intact viral DNA. It accounted for about 50% of the viral DNA recovered at 1.5 h after infection but less than 20% by 4.5 h. The proportion of R component was independent of multiplicity of infection, even at less than one particle per cell. Viral hexon and protein VII, but not protein VI, were detected in the fractions containing the R component. These properties are consistent with those of partially uncoated virions associated with the nuclear envelope. A substantial proportion of the S component viral DNA had the same density as cellular chromatin. Protein VII was the most abundant viral protein present in gradient fractions that contained the S component. Complexes containing USF transcription factor cross-linked to the adenovirus major late promoter were detected by viral chromatin immunoprecipitation of the fractions containing S component. The S component probably contained uncoated nuclear viral DNA that assembles into early viral transcription complexes
Semiconductor laser shearing interferometer
International Nuclear Information System (INIS)
Ming Hai; Li Ming; Chen Nong; Xie Jiaping
1988-03-01
The application of semiconductor laser on grating shearing interferometry is studied experimentally in the present paper. The method measuring the coherence of semiconductor laser beam by ion etching double frequency grating is proposed. The experimental result of lens aberration with semiconductor laser shearing interferometer is given. Talbot shearing interferometry of semiconductor laser is also described. (author). 2 refs, 9 figs
Dagan, Yuval; Ghoniem, Ahmed
2017-11-01
Recent experimental observations show that the dynamic response of a reactive flow is strongly impacted by the fuel chemistry. In order to gain insight into some of the underlying mechanisms we formulate a new linear stability model that incorporates the impact of finite rate chemistry on the hydrodynamic stability of shear flows. Contrary to previous studies which typically assume that the velocity field is independent of the kinetic rates, the velocity field in our study is coupled with the temperature field. Using this formulation, we reproduce previous results, e.g., most unstable global modes, obtained for non-reacting shear flow. Moreover, we show that these modes are significantly altered in frequency and gain by the presence of a reaction region within the shear layer. This qualitatively agrees with results of our recent experimental and numerical studies, which show that the flame surface location relative to the shear layer influences the stability characteristics in combustion tunnels. This study suggests a physical explanation for the observed impact of finite rate chemistry on shear flow stability.
Linear and non-linear autoregressive models for short-term wind speed forecasting
International Nuclear Information System (INIS)
Lydia, M.; Suresh Kumar, S.; Immanuel Selvakumar, A.; Edwin Prem Kumar, G.
2016-01-01
Highlights: • Models for wind speed prediction at 10-min intervals up to 1 h built on time-series wind speed data. • Four different multivariate models for wind speed built based on exogenous variables. • Non-linear models built using three data mining algorithms outperform the linear models. • Autoregressive models based on wind direction perform better than other models. - Abstract: Wind speed forecasting aids in estimating the energy produced from wind farms. The soaring energy demands of the world and minimal availability of conventional energy sources have significantly increased the role of non-conventional sources of energy like solar, wind, etc. Development of models for wind speed forecasting with higher reliability and greater accuracy is the need of the hour. In this paper, models for predicting wind speed at 10-min intervals up to 1 h have been built based on linear and non-linear autoregressive moving average models with and without external variables. The autoregressive moving average models based on wind direction and annual trends have been built using data obtained from Sotavento Galicia Plc. and autoregressive moving average models based on wind direction, wind shear and temperature have been built on data obtained from Centre for Wind Energy Technology, Chennai, India. While the parameters of the linear models are obtained using the Gauss–Newton algorithm, the non-linear autoregressive models are developed using three different data mining algorithms. The accuracy of the models has been measured using three performance metrics namely, the Mean Absolute Error, Root Mean Squared Error and Mean Absolute Percentage Error.
Dynamic mortar finite element method for modeling of shear rupture on frictional rough surfaces
Tal, Yuval; Hager, Bradford H.
2017-09-01
This paper presents a mortar-based finite element formulation for modeling the dynamics of shear rupture on rough interfaces governed by slip-weakening and rate and state (RS) friction laws, focusing on the dynamics of earthquakes. The method utilizes the dual Lagrange multipliers and the primal-dual active set strategy concepts, together with a consistent discretization and linearization of the contact forces and constraints, and the friction laws to obtain a semi-smooth Newton method. The discretization of the RS friction law involves a procedure to condense out the state variables, thus eliminating the addition of another set of unknowns into the system. Several numerical examples of shear rupture on frictional rough interfaces demonstrate the efficiency of the method and examine the effects of the different time discretization schemes on the convergence, energy conservation, and the time evolution of shear traction and slip rate.
Halo shapes, initial shear field, and cosmic web
International Nuclear Information System (INIS)
Rossi, G
2014-01-01
The ellipsoidal collapse model, combined with the excursion set theory, allows one to estimate the shapes of dark matter halos as seen in high-resolution numerical simulations. The same theoretical framework predicts a quasi-universal behaviour for the conditional axis ratio distributions at later times, set by initial conditions and unaltered by non-linear evolution. The formalism for halo shapes is also useful in making the connection with the initial shear field of the cosmic web, which plays a crucial role in the formation of large-scale structures. The author has briefly discussed the basic aspects of the modelling, as well as the implications of a new formula for the constrained eigenvalues of the initial shear field, given the fact that positions are peaks or dips in the corresponding density field – and not random locations. This formula leads to a new generalized excursion set algorithm for peaks in Gaussian random fields. The results highlighted, here, are relevant for a number of applications, especially for weak lensing studies and for devising algorithms to find and classify structures in the cosmic web
Gyrokinetic analysis of ion temperature gradient modes in the presence of sheared flows
International Nuclear Information System (INIS)
Artun, M.; Tang, W.M.
1992-01-01
The linearized gyrokinetic equation governing electrostatic microinstabilities in the presence of sheared equilibrium flow in both the z and y directions has been systematically derived for a sheared slab geometry, where in the large aspect ratio limit z and y directions correspond to the toroidal and poloidal directions respectively. In the familiar long perpendicular wavelength regime (κ perpendicular ρi > 1), the analysis leads to a comprehensive kinetic differential eigenmode equation which is solved numerically. The numerical results have been successfully cross-checked against analytic estimates in the fluid limit. For typical conditions, the Ion Temperature Gradient (ηi) modes are found to be stabilized for y-direction flows with a velocity shear scale comparable to that of the ion temperature gradient and velocities of a few percent of the sound speed. Sheared flows in the z-direction taken along are usually destabilizing, with the effect being independent of the sign of the flow. However, when both types are simultaneously considered, it is found that in the presence of shared z-direction flow, sheared y-direction flow can be either stabilizing or destabilizing depending on the relative sign of these flows. However, for sufficiently large values of υ' y the mode is completely stabilized regardless of the sign of υ' z υ' y . The importance of a proper kinetic treatment of this problem is supported by comparisons with fluid estimates. In particular, when such effects are favorable, significantly smaller values of sheared y-direction flow are required for stability than fluid estimates would indicate
International Nuclear Information System (INIS)
Diao, Y; Hinson, K; Sun, Y; Arsuaga, J
2015-01-01
Kinetoplast DNA (kDNA) is the mitochondrial of DNA of disease causing organisms such as Trypanosoma Brucei (T. Brucei) and Trypanosoma Cruzi (T. Cruzi). In most organisms, KDNA is made of thousands of small circular DNA molecules that are highly condensed and topologically linked forming a gigantic planar network. In our previous work we have developed mathematical and computational models to test the confinement hypothesis, that is that the formation of kDNA minicircle networks is a product of the high DNA condensation achieved in the mitochondrion of these organisms. In these studies we studied three parameters that characterize the growth of the network topology upon confinement: the critical percolation density, the mean saturation density and the mean valence (i.e. the number of mini circles topologically linked to any chosen minicircle). Experimental results on insect-infecting organisms showed that the mean valence is equal to three, forming a structure similar to those found in medieval chain-mails. These same studies hypothesized that this value of the mean valence was driven by the DNA excluded volume. Here we extend our previous work on kDNA by characterizing the effects of DNA excluded volume on the three descriptive parameters. Using computer simulations of polymer swelling we found that (1) in agreement with previous studies the linking probability of two minicircles does not decrease linearly with the distance between the two minicircles, (2) the mean valence grows linearly with the density of minicircles and decreases with the thickness of the excluded volume, (3) the critical percolation and mean saturation densities grow linearly with the thickness of the excluded volume. Our results therefore suggest that the swelling of the DNA molecule, due to electrostatic interactions, has relatively mild implications on the overall topology of the network. Our results also validate our topological descriptors since they appear to reflect the changes in the
Diao, Y.; Hinson, K.; Sun, Y.; Arsuaga, J.
2015-10-01
Kinetoplast DNA (kDNA) is the mitochondrial of DNA of disease causing organisms such as Trypanosoma Brucei (T. Brucei) and Trypanosoma Cruzi (T. Cruzi). In most organisms, KDNA is made of thousands of small circular DNA molecules that are highly condensed and topologically linked forming a gigantic planar network. In our previous work we have developed mathematical and computational models to test the confinement hypothesis, that is that the formation of kDNA minicircle networks is a product of the high DNA condensation achieved in the mitochondrion of these organisms. In these studies we studied three parameters that characterize the growth of the network topology upon confinement: the critical percolation density, the mean saturation density and the mean valence (i.e. the number of mini circles topologically linked to any chosen minicircle). Experimental results on insect-infecting organisms showed that the mean valence is equal to three, forming a structure similar to those found in medieval chain-mails. These same studies hypothesized that this value of the mean valence was driven by the DNA excluded volume. Here we extend our previous work on kDNA by characterizing the effects of DNA excluded volume on the three descriptive parameters. Using computer simulations of polymer swelling we found that (1) in agreement with previous studies the linking probability of two minicircles does not decrease linearly with the distance between the two minicircles, (2) the mean valence grows linearly with the density of minicircles and decreases with the thickness of the excluded volume, (3) the critical percolation and mean saturation densities grow linearly with the thickness of the excluded volume. Our results therefore suggest that the swelling of the DNA molecule, due to electrostatic interactions, has relatively mild implications on the overall topology of the network. Our results also validate our topological descriptors since they appear to reflect the changes in the
Comparison of direct shear and simple shear responses of municipal solid waste in USA
Fei, Xunchang
2017-10-25
Although large-size simple shear (SS) testing of municipal solid waste (MSW) may arguably provide a more realistic estimate of the shear strength (τ ) of MSW than the most commonly used direct shear (DS) testing, a systematic comparison between the shear responses of MSW obtained from the two testing methods is lacking. In this study, a large-size shear device was used to test identical MSW specimens sampled in USA in DS and SS. Eight DS tests and 11 SS tests were conducted at vertical effective stresses of 50–500 kPa. The stress–displacement response of MSW in SS testing was hyperbolic and a maximum shear stress was reached, whereas a maximum shear stress was not reached in most DS tests. The τ, effective friction angle (ϕ ′) and cohesion (c ′) of MSW were obtained from DS and SS tests by using a displacement failure criterion of 40 mm. τ in SS testing was found to be equal to or lower than τ in DS testing with ratios of τ between 73 and 101%. SS testing resulted in higher ϕ ′ but lower c ′ than DS testing. The shear strength parameters were lower than those obtained in previous studies from DS tests at 55 mm displacement.
Energy Technology Data Exchange (ETDEWEB)
Saouma, Victor E.; Hariri-Ardebili, Mohammad Amin [Department of Civil Engineering, University of Colorado, Boulder, CO 80305 (United States); Le Pape, Yann, E-mail: lepapeym@ornl.gov [Oak Ridge National Laboratory, One Bethel Valley Road, Oak Ridge, TN 37831 (United States); Balaji, Rajagopalan [Department of Civil Engineering, University of Colorado, Boulder, CO 80305 (United States)
2016-12-15
Highlights: • Alkali–silica reaction (ASR) affects reinforced structures shear strength. • Statistical analysis indicates large scattering of post-ASR strength losses/gains. • Competitive structural and materials mechanisms affect the residual shear strength. - Abstract: The residual structural shear resistance of concrete members without shear reinforcement and subject to alkali–aggregate reaction (ASR) is investigated by finite element analysis. A parametric numerical study of 648 analyses considering various structural members’ geometries, boundary conditions, ASR-induced losses of materials properties, ASR expansions and reinforcement ratios is conducted. As a result of competitive mechanisms (e.g., ASR-induced prestressing caused by the longitudinal reinforcement) and loss of concrete materials properties, important scatter in terms of gain or loss of shear strength is observed: about 50% of the studied configurations lead to a degradation of structural performance. The range of variation in terms of post-ASR shear resistance is extremely scattered, in particular, when ASR results in out-of-plane expansion only. Influencing factors are derived by two methods: (i) visual inspection of boxplots and probability distributions, and (ii) information criteria within multiple-linear regression analysis.
Linearized gyro-kinetic equation
International Nuclear Information System (INIS)
Catto, P.J.; Tsang, K.T.
1976-01-01
An ordering of the linearized Fokker-Planck equation is performed in which gyroradius corrections are retained to lowest order and the radial dependence appropriate for sheared magnetic fields is treated without resorting to a WKB technique. This description is shown to be necessary to obtain the proper radial dependence when the product of the poloidal wavenumber and the gyroradius is large (k rho much greater than 1). A like particle collision operator valid for arbitrary k rho also has been derived. In addition, neoclassical, drift, finite β (plasma pressure/magnetic pressure), and unperturbed toroidal electric field modifications are treated
Amininasab, S.; Sadighi-Bonabi, R.; Khodadadi Azadboni, F.
2018-02-01
Shear stress effect has been often neglected in calculation of the Weibel instability growth rate in laser-plasma interactions. In the present work, the role of the shear stress in the Weibel instability growth rate in the dense plasma with density gradient is explored. By increasing the density gradient, the shear stress threshold is increasing and the range of the propagation angles of growing modes is limited. Therefore, by increasing steps of the density gradient plasma near the relativistic electron beam-emitting region, the Weibel instability occurs at a higher stress flow. Calculations show that the minimum value of the stress rate threshold for linear polarization is greater than that of circular polarization. The Wiebel instability growth rate for linear polarization is 18.3 times circular polarization. One sees that for increasing stress and density gradient effects, there are smaller maximal growth rates for the range of the propagation angles of growing modes /π 2 propagation angles of growing modes /π 2 < θ m i n < π and /3 π 2 < θ m i n < 2 π in circular polarized plasma.
Ellens, D.J.; Sussenbach, J.S.; Jansz, H.S.
1974-01-01
Replicating Ad5 DNA was isolated from nuclei of infected KB cells and studied by electron microscopy. Branched as well as unbranched linear intermediates were observed containing extended regions of single-stranded DNA. The relationship between the branched and unbranched structures was studied
Directory of Open Access Journals (Sweden)
Ammar N. HANOON
2014-12-01
Full Text Available Self-compacting concrete (SCC is a new generation of high-performance concrete, known for its excellent deformability and high resistance to segregation and bleeding. Nonetheless, SCC may be incapable of resisting shear because the shear resistance mechanisms of this concrete are uncertain, especially the aggregate interlock mechanism. This uncertainty is attributed to the fact that SCC contains a smaller amount of coarse aggregates than normal concrete (NC does. This study focuses on the shear strength of self-compacting reinforced concrete (RC beams with and without shear reinforcement. A total of 16 RC beam specimens was manufactured and tested in terms of shear span-to-depth ratio and flexural and shear reinforcement ratio. The test results were compared with those of the shear design equations developed by ACI, BS, CAN and NZ codes. Results show that an increase in web reinforcement enhanced cracking strength and ultimate load. Shear-tension failure was the control failure in all tested beams.
International Nuclear Information System (INIS)
Derks, Didi; Wisman, Hans; Blaaderen, Alfons van; Imhof, Arnout
2004-01-01
We report on novel possibilities for studying colloidal suspensions in a steady shear field in real space. Fluorescence confocal microscopy is combined with the use of a counter-rotating cone-plate shear cell. This allows imaging of individual particles in the bulk of a sheared suspension in a stationary plane. Moreover, this plane of zero velocity can be moved in the velocity gradient direction while keeping the shear rate constant. The colloidal system under study consists of rhodamine labelled PMMA spheres in a nearly density and refractive index matched mixture of cyclohexylbromide and cis-decalin. We show measured flow profiles in both the fluid and the crystalline phase and find indications for shear banding in the case of a sheared crystal. Furthermore, we show that, thanks to the counter-rotating principle of the cone-plate shear cell, a layer of particles in the bulk of a sheared crystalline suspension can be imaged for a prolonged time, with the result that their positions can be tracked
Emergence of coherent localized structures in shear deformations of temperature dependent fluids
Katsaounis, Theodoros
2016-11-25
Shear localization occurs in various instances of material instability in solid mechanics and is typically associated with Hadamard-instability for an underlying model. While Hadamard instability indicates the catastrophic growth of oscillations around a mean state, it does not by itself explain the formation of coherent structures typically observed in localization. The latter is a nonlinear effect and its analysis is the main objective of this article. We consider a model that captures the main mechanisms observed in high strain-rate deformation of metals, and describes shear motions of temperature dependent non-Newtonian fluids. For a special dependence of the viscosity on the temperature, we carry out a linearized stability analysis around a base state of uniform shearing solutions, and quantitatively assess the effects of the various mechanisms affecting the problem: thermal softening, momentum diffusion and thermal diffusion. Then, we turn to the nonlinear model, and construct localized states - in the form of similarity solutions - that emerge as coherent structures in the localization process. This justifies a scenario for localization that is proposed on the basis of asymptotic analysis in \\\\cite{KT}.
Large strain deformation behavior of polymeric gels in shear- and cavitation rheology
Hashemnejad, Seyed Meysam; Kundu, Santanu
Polymeric gels are used in many applications including in biomedical and in food industries. Investigation of mechanical responses of swollen polymer gels and linking that to the polymer chain dynamics are of significant interest. Here, large strain deformation behavior of two different gel systems and with different network architecture will be presented. We consider biologically relevant polysaccharide hydrogels, formed through ionic and covalent crosslinking, and physically associating triblock copolymer gels in a midblock selective solvent. Gels with similar low-strain shear modulus display distinctly different non-linear rheological behavior in large strain shear deformation. Both these gels display strain-stiffening behavior in shear-deformation prior to macroscopic fracture of the network, however, only the alginate gels display negative normal stress. The cavitation rheology data show that the critical pressure for cavitation is higher for alginate gels than that observed for triblock gels. These distinctly different large-strain deformation behavior has been related to the gel network structure, as alginate chains are much stiffer than the triblock polymer chains.
Emergence of coherent localized structures in shear deformations of temperature dependent fluids
Katsaounis, Theodoros; Olivier, Julien; Tzavaras, Athanasios
2016-01-01
Shear localization occurs in various instances of material instability in solid mechanics and is typically associated with Hadamard-instability for an underlying model. While Hadamard instability indicates the catastrophic growth of oscillations around a mean state, it does not by itself explain the formation of coherent structures typically observed in localization. The latter is a nonlinear effect and its analysis is the main objective of this article. We consider a model that captures the main mechanisms observed in high strain-rate deformation of metals, and describes shear motions of temperature dependent non-Newtonian fluids. For a special dependence of the viscosity on the temperature, we carry out a linearized stability analysis around a base state of uniform shearing solutions, and quantitatively assess the effects of the various mechanisms affecting the problem: thermal softening, momentum diffusion and thermal diffusion. Then, we turn to the nonlinear model, and construct localized states - in the form of similarity solutions - that emerge as coherent structures in the localization process. This justifies a scenario for localization that is proposed on the basis of asymptotic analysis in \\cite{KT}.
International Nuclear Information System (INIS)
Girrens, S.P.; Farrar, C.R.
1991-07-01
A safety concern for the proposed Special Nuclear Materials Laboratory (SNML) facility at the Los Alamos National Laboratory was air leakage from the facility if it were to experience a design basis earthquake event. To address this concern, a study was initiated to estimate air leakage, driven by wind-generated pressure gradients, from a seismically damaged concrete structure. This report describes a prototype experiment developed and performed to measure the air permeability in a reinforced concrete shear wall, both before and after simulated seismic loading. A shear wall test structure was fabricated with standard 4000-psi concrete mix. Static load-cycle testing was used to simulate earthquake loading. Permeability measurements were made by pressurizing one side of the shear wall above atmospheric conditions and recording the transient pressure decay. As long as the structure exhibited linear load displacement response, no variation in the air permeability was detected. However, experimental results indicate that the air permeability in the shear wall increased by a factor of 40 after the wall had been damaged (cracked). 17 figs., 8 tabs
Constraining primordial non-Gaussianity with cosmological weak lensing: shear and flexion
International Nuclear Information System (INIS)
Fedeli, C.; Bartelmann, M.; Moscardini, L.
2012-01-01
, improves the shear constraints by ∼ 10% when added. However on such small scales the highly non-linear clustering of matter, the impact of baryonic physics, and the non-Gaussian part of the covariance matrix make any error estimation uncertain. By considering lower, and possibly more realistic, values of the flexion intrinsic shape noise results in flexion constraining power being a factor of ∼ 2 better than that of shear, and the bounds on σ 8 and f NL being improved by a factor of ∼ 3 upon their combination
Bechert, D. W.
1982-01-01
The generation of instability waves in free shear layers is investigated. The model assumes an infinitesimally thin shear layer shed from a semi-infinite plate which is exposed to sound excitation. The acoustical shear layer excitation by a source further away from the plate edge in the downstream direction is very weak while upstream from the plate edge the excitation is relatively efficient. A special solution is given for the source at the plate edge. The theory is then extended to two streams on both sides of the shear layer having different velocities and densities. Furthermore, the excitation of a shear layer in a channel is calculated. A reference quantity is found for the magnitude of the excited instability waves. For a comparison with measurements, numerical computations of the velocity field outside the shear layer were carried out.
Size reduction of high- and low-moisture corn stalks by linear knife grid system
Energy Technology Data Exchange (ETDEWEB)
Igathinathane, C. [Agricultural and Biological Engineering Department, 130 Creelman Street, Mississippi State University, Mississippi State, Mississippi 39762 (United States); Womac, A.R. [Department of Biosystems Engineering and Soil Science, 2506 E. J. Chapman Drive, The University of Tennessee, Knoxville, Tennessee 37996 (United States); Sokhansanj, S. [Oak Ridge National Laboratory, Environmental Sciences Division, Oak Ridge, P. O. Box 2008, Tennessee 37831 (United States); Narayan, S. [First American Scientific Company, 100 Park Royal South West Vancouver, British Columbia, V7T 1A2 (Canada)
2009-04-15
High- and low-moisture corn stalks were tested using a linear knife grid size reduction device developed for first-stage size reduction. The device was used in conjunction with a universal test machine that quantified shearing stress and energy characteristics for forcing a bed of corn stalks through a grid of sharp knives. No published engineering performance data for corn stover with similar devices are available to optimize performance; however, commercial knife grid systems exist for forage size reduction. From the force-displacement data, mean and maximum ultimate shear stresses, cumulative and peak mass-based cutting energies for corn stalks, and mean new surface area-based cutting energies were determined from 4-5 refill runs at two moisture contents (78.8% and 11.3% wet basis), three knife grid spacings (25.4, 50.8, and 101.6 mm), and three bed depths (50.8, 101.6, and 152.4 mm). In general, the results indicated that peak failure load, ultimate shear stress, and cutting energy values varied directly with bed depth and inversely with knife grid spacing. Mean separation analysis established that high- and low-moisture conditions and bed depths {>=} 101.6 mm did not differ significantly (P < 0.05) for ultimate stress and cutting energy values, but knife grid spacing were significantly different. Linear knife grid cutting energy requirements for both moisture conditions of corn stalks were much smaller than reported cutting energy requirements. Ultimate shear stress and cutting energy results of this research should aid the engineering design of commercial scale linear knife gird size reduction equipment for various biomass feedstocks. (author)
DEFF Research Database (Denmark)
Lazarov, Boyan Stefanov; Ditlevsen, Ove Dalager
2003-01-01
The object of study is a stationary Gaussian white noise excited MDOF linear elastic, ideal plastic, linearly damped, statically determinate oscillator with several potential elements of ideal plastic yielding. Specifically the study is exemplified for a plane multistory shear frame with rigid...... traverses where all the connecting columns except the columns in one or more of the bottom floors have finite symmetrical yield limits. The white noise excitation acts on the mass of the first floor making the movement of the elastic bottom floors simulate a ground motion that interacts with the structure...
DEFF Research Database (Denmark)
Lazarov, Boyan Stefanov; Ditlevsen, Ove Dalager
2004-01-01
The object of study is a stationary Gaussian white noise excited multi-degree-of-freedom (MDOF) linear elastic, ideal plastic, linearly damped, statically determinate oscillator with several potential elements of ideal plastic yielding. Specifically the study is exemplified for a plane multistory...... shear frame with rigid traverses where all the connecting columns except the columns in one or more of the bottom floors have finite symmetrical yield limits. The white noise excitation acts on the mass of the first floor making the movement of the elastic bottom floors simulate a ground motion...
Shear strength of non-shear reinforced concrete elements
DEFF Research Database (Denmark)
Hoang, Cao linh
1997-01-01
is based upon the hypothesis that cracks can be transformed into yield lines, which have lower sliding resistance than yield lines formed in uncracked concrete.Proposals have been made on how the derived standard solutions may be applied to more complicated cases, such as continuous beams, beams......The report deals with the shear strength of statically indeterminate reinforced concrete beams without shear reinforcement. Solutions for a number of beams with different load and support conditions have been derived by means of the crack sliding model developed by Jin- Ping Zhang.This model...
Experiments on sheet metal shearing
Gustafsson, Emil
2013-01-01
Within the sheet metal industry, different shear cutting technologies are commonly used in several processing steps, e.g. in cut to length lines, slitting lines, end cropping etc. Shearing has speed and cost advantages over competing cutting methods like laser and plasma cutting, but involves large forces on the equipment and large strains in the sheet material.Numerical models to predict forces and sheared edge geometry for different sheet metal grades and different shear parameter set-ups a...
Experimental observation of shear thickening oscillation
DEFF Research Database (Denmark)
Nagahiro, Shin-ichiro; Nakanishi, Hiizu; Mitarai, Namiko
2013-01-01
We report experimental observations of the shear thickening oscillation, i.e. the spontaneous macroscopic oscillation in the shear flow of severe shear thickening fluid. Using a density-matched starch-water mixture, in the cylindrical shear flow of a few centimeters flow width, we observed...
Shear strength in corner region of reinforced concrete duct type structures to be embedded in soil
International Nuclear Information System (INIS)
Aoyagi, Y.; Endo, T.
1993-01-01
Reinforced concrete ducts for accommodating emergency cooling water pipes are generally embedded in soil. The structures is classified as one of the most important structures in terms of earthquake resistant design. During a strong earthquake it is subjected to shear deformations in concerted movement with surrounding soil. The comer regions of the duct should be designed against shear with moment combined. However, the complicated stress conditions in the region render the design more intricate in comparison with the case of simple determinate RC beam type structures. With the above situation in mind an experimental study was conducted, in which prototype as well as one half scale models representing the stress conditions in the region of interest were loaded and brought to failure in shear. The cross section of the prototype test model without shear reinforcements was 60 (height) x 30cm (width), and the tensile reinforcement ratio was 2.58%. The following results were obtained within the limit of the experimental study. (1) The shear capacity predicted by Japanese Design Code for linear RC members over-estimated the experimental ones with a considerably large safety margin of 4.4-5.0. (2) An improved design procedure to be applied to the specific structure was proposed, which gave a reasonable safety factor against shear failure of 1.7-2.0. (3) Combined smeared and discrete cracking model was utilized to simulate the shear failure mechanism, which could realistically pursue experimental behaviors. (author)
Shear behaviour of reinforced phyllite concrete beams
International Nuclear Information System (INIS)
Adom-Asamoah, Mark; Owusu Afrifa, Russell
2013-01-01
Highlights: ► Phyllite concrete beams often exhibited shear with anchorage bond failure. ► Different shear design provisions for reinforced phyllite beams are compared. ► Predicted shear capacity of phyllite beams must be modified by a reduction factor. -- Abstract: The shear behaviour of concrete beams made from phyllite aggregates subjected to monotonic and cyclic loading is reported. First diagonal shear crack load of beams with and without shear reinforcement was between 42–58% and 42–92% of the failure loads respectively. The phyllite concrete beams without shear links had lower post-diagonal cracking shear resistance compared to corresponding phyllite beams with shear links. As a result of hysteretic energy dissipation, limited cyclic loading affected the stiffness, strength and deformation of the phyllite beams with shear reinforcement. Generally, beams with and without shear reinforcement showed anchorage bond failure in addition to the shear failure due to high stress concentration near the supports. The ACI, BS and EC codes are conservative for the prediction of phyllite concrete beams without shear reinforcement but they all overestimate the shear strength of phyllite concrete beams with shear reinforcement. It is recommended that the predicted shear capacity of phyllite beams reinforced with steel stirrups be modified by a reduction factor of 0.7 in order to specify a high enough safety factor on their ultimate strength. It is also recommended that susceptibility of phyllite concrete beams to undergo anchorage bond failure is averted in design by the provision of greater anchorage lengths than usually permitted.
Wall shear stress from a rotating cylinder in cross flow using the electrochemical technique
International Nuclear Information System (INIS)
Labraga, L.; Bourabaa, N.; Berkah, T.
2002-01-01
The wall shear rate from a rotating cylinder in a uniform flow was measured with flush-mounted electrochemical mass transfer probes. The experiments were performed using two rectangular electrodes in a sandwich arrangement. Initially, the frequency response of that probe was numerically studied using an inverse mass transfer method in order to restore the whole wall shear stress in the time domain starting from the measured transfer coefficients given by the split probe. The experiments were performed in the range of velocity ratios 0 4, points of zero shear stress on the rotating cylinder vanish, which is in fact consistent with the previous arguments that the cylinder is surrounded by a set of closed streamlines. This experimental study shows that, when their dynamic behaviour is known, the electrochemical probes are able to sense complex fine structures not observed up to now by previous analytical, numerical or experimental methods, even when non-linear effects are not negligible. (orig.)
Fowler, Stephanie M; Schmidt, Heinar; van de Ven, Remy; Wynn, Peter; Hopkins, David L
2014-12-01
A Raman spectroscopic hand held device was used to predict shear force (SF) of 80 fresh lamb m. longissimus lumborum (LL) at 1 and 5days post mortem (PM). Traditional predictors of SF including sarcomere length (SL), particle size (PS), cooking loss (CL), percentage myofibrillar breaks and pH were also measured. SF values were regressed against Raman spectra using partial least squares regression and against the traditional predictors using linear regression. The best prediction of shear force values used spectra at 1day PM to predict shear force at 1day which gave a root mean square error of prediction (RMSEP) of 13.6 (Null=14.0) and the R(2) between observed and cross validated predicted values was 0.06 (R(2)cv). Overall, for fresh LL, the predictability SF, by either the Raman hand held probe or traditional predictors was low. Copyright © 2014 Elsevier Ltd. All rights reserved.
Liu, Peng; Sun, Jianning; Shen, Lidu
2016-10-01
The entrainment flux ratio A e and the inversion layer (IL) thickness are two key parameters in a mixed layer model. A e is defined as the ratio of the entrainment heat flux at the mixed layer top to the surface heat flux. The IL is the layer between the mixed layer and the free atmosphere. In this study, a parameterization of A e is derived from the TKE budget in the firstorder model for a well-developed CBL under the condition of linearly sheared geostrophic velocity with a zero value at the surface. It is also appropriate for a CBL under the condition of geostrophic velocity remaining constant with height. LESs are conducted under the above two conditions to determine the coefficients in the parameterization scheme. Results suggest that about 43% of the shear-produced TKE in the IL is available for entrainment, while the shear-produced TKE in the mixed layer and surface layer have little effect on entrainment. Based on this scheme, a new scale of convective turbulence velocity is proposed and applied to parameterize the IL thickness. The LES outputs for the CBLs under the condition of linearly sheared geostrophic velocity with a non-zero surface value are used to verify the performance of the parameterization scheme. It is found that the parameterized A e and IL thickness agree well with the LES outputs.
a Predictive Model of Permeability for Fractal-Based Rough Rock Fractures during Shear
Huang, Na; Jiang, Yujing; Liu, Richeng; Li, Bo; Zhang, Zhenyu
This study investigates the roles of fracture roughness, normal stress and shear displacement on the fluid flow characteristics through three-dimensional (3D) self-affine fractal rock fractures, whose surfaces are generated using the modified successive random additions (SRA) algorithm. A series of numerical shear-flow tests under different normal stresses were conducted on rough rock fractures to calculate the evolutions of fracture aperture and permeability. The results show that the rough surfaces of fractal-based fractures can be described using the scaling parameter Hurst exponent (H), in which H = 3 - Df, where Df is the fractal dimension of 3D single fractures. The joint roughness coefficient (JRC) distribution of fracture profiles follows a Gauss function with a negative linear relationship between H and average JRC. The frequency curves of aperture distributions change from sharp to flat with increasing shear displacement, indicating a more anisotropic and heterogeneous flow pattern. Both the mean aperture and permeability of fracture increase with the increment of surface roughness and decrement of normal stress. At the beginning of shear, the permeability increases remarkably and then gradually becomes steady. A predictive model of permeability using the mean mechanical aperture is proposed and the validity is verified by comparisons with the experimental results reported in literature. The proposed model provides a simple method to approximate permeability of fractal-based rough rock fractures during shear using fracture aperture distribution that can be easily obtained from digitized fracture surface information.
Critical bed shear stress and threshold of motion of maerl biogenic gravel
Joshi, Siddhi; Duffy, Garret Patrick; Brown, Colin
2017-07-01
A determination of the critical bed shear stress of maerl is a prerequisite for quantifying its mobility, rate of erosion and deposition in conservation management. The critical bed shear stress for incipient motion has been determined for the first time for samples from biogenic free-living maerl beds in three contrasting environments (open marine, intertidal and beach) in Galway Bay, west of Ireland. The bed shear stress was determined using two methods, Law of the Wall and Turbulent Kinetic Energy, in a rotating annular flume and in a linear flume. The velocity profile of flowing water above a bed of natural maerl grains was measured in four runs of progressively increasing flow velocity until the flow exceeded the critical shear stress of grains on the bed. The critical Shields parameter and the mobility number are estimated and compared with the equivalent curves for natural quartz sand. The critical Shields parameters for the maerl particles from all three environments fall below the Shields curve. Along with a previously reported correlation between maerl grain shape and settling velocity, these results suggest that the highly irregular shapes also allow maerl grains to be mobilised more easily than quartz grains with the same sieve diameter. The intertidal beds with the roughest particles exhibit the greatest critical shear stress because the particle thalli interlock and resist entrainment. In samples with a high percentage of maerl and low percentage of siliciclastic sand, the lower density, lower settling velocity and lower critical bed shear stress of maerl results in its preferential transport over the siliciclastic sediment. At velocities ∼10 cm s-1 higher than the threshold velocity of grain motion, rarely-documented subaqueous maerl dunes formed in the annular flume.
Absolute/convective secondary instabilities and the role of confinement in free shear layers
Arratia, Cristóbal; Mowlavi, Saviz; Gallaire, François
2018-05-01
We study the linear spatiotemporal stability of an infinite row of equal point vortices under symmetric confinement between parallel walls. These rows of vortices serve to model the secondary instability leading to the merging of consecutive (Kelvin-Helmholtz) vortices in free shear layers, allowing us to study how confinement limits the growth of shear layers through vortex pairings. Using a geometric construction akin to a Legendre transform on the dispersion relation, we compute the growth rate of the instability in different reference frames as a function of the frame velocity with respect to the vortices. This approach is verified and complemented with numerical computations of the linear impulse response, fully characterizing the absolute/convective nature of the instability. Similar to results by Healey on the primary instability of parallel tanh profiles [J. Fluid Mech. 623, 241 (2009), 10.1017/S0022112008005284], we observe a range of confinement in which absolute instability is promoted. For a parallel shear layer with prescribed confinement and mixing length, the threshold for absolute/convective instability of the secondary pairing instability depends on the separation distance between consecutive vortices, which is physically determined by the wavelength selected by the previous (primary or pairing) instability. In the presence of counterflow and moderate to weak confinement, small (large) wavelength of the vortex row leads to absolute (convective) instability. While absolute secondary instabilities in spatially developing flows have been previously related to an abrupt transition to a complex behavior, this secondary pairing instability regenerates the flow with an increased wavelength, eventually leading to a convectively unstable row of vortices. We argue that since the primary instability remains active for large wavelengths, a spatially developing shear layer can directly saturate on the wavelength of such a convectively unstable row, by
To determine the slow shearing rate for consolidation drained shear box tests
Jamalludin, Damanhuri; Ahmad, Azura; Nordin, Mohd Mustaqim Mohd; Hashim, Mohamad Zain; Ibrahim, Anas; Ahmad, Fauziah
2017-08-01
Slope failures always occur in Malaysia especially during the rainy seasons. They cause damage to properties and fatalities. In this study, a total of 24 one dimensional consolidation tests were carried out on soil samples taken from 16 slope failures in Penang Island and in Baling, Kedah. The slope failures in Penang Island are within the granitic residual soil while in Baling, Kedah they are situated within the sedimentary residual soil. Most of the disturbed soil samples were taken at 100mm depth from the existing soil surface while some soil samples were also taken at 400, 700 and 1000mm depths from the existing soil surface. They were immediately placed in 2 layers of plastic bag to prevent moisture loss. Field bulk density tests were also carried out at all the locations where soil samples were taken. The field bulk density results were later used to re-compact the soil samples for the consolidation tests. The objective of the research is to determine the slow shearing rate to be used in consolidated drained shear box for residual soils taken from slope failures so that the effective shear strength parameters can be determined. One dimensional consolidation tests were used to determine the slow shearing rate. The slow shearing rate found in this study to be used in the consolidated drained shear box tests especially for Northern Malaysian residual soils was 0.286mm/minute.
Directory of Open Access Journals (Sweden)
Zongqi Zhang
2016-07-01
Full Text Available Background/Aims: Smooth muscle cells may dedifferentiate into the synthetic phenotype and promote atherosclerosis. Here, we explored the role of myoendothelial gap junctions in phenotypic switching of human coronary artery smooth muscle cells (HCASMCs co-cultured with human coronary artery endothelial cells (HCAECs exposed to shear stress. Methods: HCASMCs and HCAECs were seeded on opposite sides of Transwell inserts, and HCAECs were exposed to laminar shear stress of 12 dyn/cm2 or 5 dyn/cm2. The myoendothelial gap junctions were evaluated by using a multi-photon microscope. Results: In co-culture with HCAECs, HCASMCs exhibited a contractile phenotype, and maintained the expression of differentiation markers MHC and H1-calponin. HCASMCs and HCAECs formed functional intercellular junctions, as evidenced by colocalization of connexin(Cx40 and Cx43 on cellular projections inside the Transwell membrane and biocytin transfer from HCAECs to HCASMCs. Cx40 siRNA and 18-α-GA attenuated protein expression of MHC and H1-calponin in HCASMCs. Shear stress of 5 dyn/cm2 increased Cx43 and decreased Cx40 expression in HCAECs, and partly inhibited biocytin transfer from HCAECs to HCASMCs, which could be completely blocked by Cx43 siRNA or restored by Cx40 DNA transfected into HCAECs. The exposure of HCAECs to shear stress of 5 dyn/cm2 promoted HCASMC phenotypic switching, manifested by morphological changes, decrease in MHC and H1-calponin expression, and increase in platelet-derived growth factor (PDGF-BB release, which was partly rescued by Cx43 siRNA or Cx40 DNA or PDGF receptor signaling inhibitor. Conclusions: The exposure of HCAECs to shear stress of 5 dyn/cm2 caused the dysfunction of Cx40/Cx43 heterotypic myoendothelial gap junctions, which may be replaced by homotypic Cx43/Cx43 channels, and induced HCASMC transition to the synthetic phenotype associated with the activation of PDGF receptor signaling, which may contribute to shear stress
Phosphate vibrations as reporters of DNA hydration
Corcelli, Steven
The asymmetric phosphate stretch vibrational frequency is extraordinarily sensitive to its local solvent environment. Using density functional theory calculations on the model compound dimethyl phosphate, the asymmetric phosphate stretch vibrational frequency was found to shift linearly with the magnitude of an electric field along the symmetry axis of the PO2 moiety (i.e. the asymmetric phosphate stretch is an excellent linear vibrational Stark effect probe). With this linear relationship established, asymmetric phosphate stretch vibrational frequencies were computed during the course of a molecular dynamics simulation of fully hydrated DNA. Moreover, contributions to shifts in the frequencies from subpopulations of water molecules (e.g. backbone, minor groove, major groove, etc.) were calculated to reveal how phosphate vibrations report the onset of DNA hydration in experiments that vary the relative humidity of non-condensing (dry) DNA samples.
Development of a structural model for the nonlinear shear deformation behavior of a seismic isolator
International Nuclear Information System (INIS)
Lee, Jae Han; Koo, Gyeong Hoi; Yoo, Bong
2002-02-01
The seismic excitation test results of an isolated test structure for artificial time history excitation are summarized for structure models of the isolated structure and isolation bearing. To simulate the response characteristic of isolated structure, shear hysteresis curves of isolators are analyzed. A simple analysis model is developed representing the actual dynamic behaviors of the test model, and the seismic responses using the simple model of the isolated structure and structure models, which are developed such as linear and bilinear models for isolators, are performed and compared with those of the seismic tests. The developed bilinear model is well applicable only to large shear strain area of LLRB
Elasto-plastic response of multi-story shear wall structures
International Nuclear Information System (INIS)
Mizutani, M.; Yamazaki, F.
1987-01-01
A Monte Carlo simulation study is carried out. The relationship between the elastoplastic and linear response for multi-DOF systems is developed based on the results of the simulation study. Several 6-story shear wall structures are considered as structural models which represent typical nuclear power plant buildings. A bilinear force-displacement relationship is assumed for each story. A number of artificial earthquakes based on the Kanai-Tajimi power spectrum and trapezoidal envelope function are used as the input ground motion. The least square method is introduced for the purpose of evaluating the median relationship between the ductility factor and linear response from the simulated data and also evaluating the deviation from this median relationship. This relationship derived for the 6-story buildings is compared with the currently used energy absorption factor and the simulation results for Zion auxiliary building model. (orig./HP)
Determination of Shear Properties in the Upper Seafloor Using Seismo-acoustic Interface Waves
Energy Technology Data Exchange (ETDEWEB)
Frivik, Svein Arne
1998-12-31
This thesis develops methods for recording and analysis of seismo-acoustic interface waves for determination of shear wave velocity as a function of depth and includes this in standard refraction seismic surveying. It investigates different techniques for estimation of dispersion characteristics of the interface waves and demonstrates that multi sensor spectral estimation techniques improve the dispersion estimates. The dispersion estimate of the fundamental interface wave mode is used as input to an object function for a model based linearized inversion. The inversion scheme provides an estimate of the shear wave velocity as a function of depth. Three field surveys were performed. Data were acquired with a standard bottom deployed refraction seismic hydrophone array containing 24 or 48 receivers, with a receiver spacing of 2.5 m. Explosive charges were used as sources. The recording time was increased from 0.5 to 8 s, compared to standard refraction seismic surveys. Shear wave velocity and shear modulus estimates were obtained from all the sites. At one of the sites, geotechnically obtained shear wave parameters were available, and a comparison between the two techniques were performed. the result of the comparison is promising and shows the potential of the technique. Although the result of applying the processing scheme to all three data sets is promising, it appears that survey parameters, like source-array spacing, receiver spacing and type of source might have been optimized for better performance. Based on this limitation, a new processing scheme and a new array configuration is proposed for surveys which integrates the recording and processing of both compressional waves and shear waves. 89 refs., 65 refs., 19 tabs.
International Nuclear Information System (INIS)
Cao Jianping; Majima, H.; Yamaguchi, C.
2000-01-01
Objective: To study the induction of DNA double-strand breaks (DSBs) in human osteosarcoma cells irradiated by X-ray, the DNA DSBs repair process and the tumour cell radiosensitivity. Methods: Two cell lines of human osteosarcoma, Rho0 and 143. B were used. Initial DNA damage of DSBs by X-ray irradiation was measured using clamped homogeneous electrical field (CHEF) electrophoresis. Results: X-ray-induced DNA DSBs of human osteosarcoma cells after CHEF-electrophoresis increased linearly with the irradiation dose between 0 and 50 Gy. The repair of DNA DSBs in human osteosarcoma cells increased with the post-irradiation incubation time. In contrast to 14.3B cell line at the same dose point, much more DNA DSBs were induced in Rho0 cell line after X-ray irradiation. Conclusion: CHEF pulsed-field gel electrophoresis (PEGE) is a sensitive method for the determination of radiation-induced DNA DSBs in high molecular weight DNA of human osteosarcoma cells. Radiation-induced DNA DSBs of osteosarcoma increase with the dose in a linear manner. After incubation, both Rho0 cell line and 143. B cell line can repair the DNA DSBs. Between two cell lines of human osteosarcoma, Rho0 and 143.B, Rho0 cell line is more sensitive to ionizing radiation than 143.B line
Graham, Rodney
2017-04-01
We are here, of course, because 1967 saw the publication of John Ramsay's famous book. Two years later a memorable field trip from Imperial College to the Outer Hebrides saw John on a bleak headland on the coast of North Uist where a relatively undeformed metadolerite within Lewisian (Precambrian) gneisses contained ductile shear zones with metamorphic fabrics in amphibolite facies. One particular outcrop was very special - a shear zone cutting otherwise completely isotropic, undeformed metadolerite, with an incremental foliation starting to develop at 45° to the deformation zone, and increasing in intensity as it approached the shear direction. Here was proof of the process of simple shear under ductile metamorphic conditions - the principles of simple shear outlined in John Ramsay's 1967 book clearly visible in nature, and verified by Ramsay's mathematical proofs in the eventual paper (Ramsay and Graham, 1970). Later work on the Lewisian on the mainland of Scotland, in South Harris, in Africa, and elsewhere applied Ramsay's simple shear principles more liberally, more imprecisely and on larger scale than at Caisteal Odair, but in retrospect it documented what seems now to be the generality of mid and lower crustal deformation. Deep seismic reflection data show us that on passive margins hyper-stretched continental crust (whether or not cloaked by Seaward Dipping Reflectors) seems to have collapsed onto the mantle. Crustal faults mostly sole out at or above the mantle - so the Moho is a detachment- an 'outer marginal detachment', if you like, and, of course, it must be a ductile shear. On non-volcanic margins this shear zone forms the first formed ocean floor before true sea floor spreading gets going to create real oceanic crust. Gianreto Manatschal, Marcel Lemoine and others realised that the serpentinites described in parts of the Alps are exposed remnants of this ductile shear zone. Associated ophicalcite breccias tell of sea floor exposure, while high
Rapid and efficient method to extract metagenomic DNA from estuarine sediments.
Shamim, Kashif; Sharma, Jaya; Dubey, Santosh Kumar
2017-07-01
Metagenomic DNA from sediments of selective estuaries of Goa, India was extracted using a simple, fast, efficient and environment friendly method. The recovery of pure metagenomic DNA from our method was significantly high as compared to other well-known methods since the concentration of recovered metagenomic DNA ranged from 1185.1 to 4579.7 µg/g of sediment. The purity of metagenomic DNA was also considerably high as the ratio of absorbance at 260 and 280 nm ranged from 1.88 to 1.94. Therefore, the recovered metagenomic DNA was directly used to perform various molecular biology experiments viz. restriction digestion, PCR amplification, cloning and metagenomic library construction. This clearly proved that our protocol for metagenomic DNA extraction using silica gel efficiently removed the contaminants and prevented shearing of the metagenomic DNA. Thus, this modified method can be used to recover pure metagenomic DNA from various estuarine sediments in a rapid, efficient and eco-friendly manner.
Energy Technology Data Exchange (ETDEWEB)
Huang, Chunfa, E-mail: chunfa.huang@case.edu [Louis Stokes Cleveland Veteran Affairs Medical Center, Case Western Reserve University (United States); Department of Medicine, Case Western Reserve University (United States); Rammelkamp Center for Research and Education, MetroHealth System Campus, Cleveland, OH 44106 (United States); Bruggeman, Leslie A. [Department of Medicine, Case Western Reserve University (United States); Rammelkamp Center for Research and Education, MetroHealth System Campus, Cleveland, OH 44106 (United States); Hydo, Lindsey M. [Louis Stokes Cleveland Veteran Affairs Medical Center, Case Western Reserve University (United States); Miller, R. Tyler [Louis Stokes Cleveland Veteran Affairs Medical Center, Case Western Reserve University (United States); Department of Medicine, Case Western Reserve University (United States); Rammelkamp Center for Research and Education, MetroHealth System Campus, Cleveland, OH 44106 (United States)
2012-06-10
The glomerular capillary wall, composed of endothelial cells, the glomerular basement membrane and the podocytes, is continually subjected to hemodynamic force arising from tractional stress due to blood pressure and shear stress due to blood flow. Exposure of glomeruli to abnormal hemodynamic force such as hyperfiltration is associated with glomerular injury and progressive renal disease, and the conversion of mechanical stimuli to chemical signals in the regulation of the process is poorly understood in podocytes. By examining DNA fragmentation, apoptotic nuclear changes and cytochrome c release, we found that shear stress induced cell apoptosis in cultured podocytes. Meanwhile, podocytes exposed to shear stress also stimulated c-Src phosphorylation, phospholipase D (PLD) activation and mammalian target of rapamycin (mTOR) signaling. Using the antibodies against c-Src, PLD{sub 1}, and PLD{sub 2} to perform reciprocal co-immunoprecipitations and in vitro PLD activity assay, our data indicated that c-Src interacted with and activated PLD{sub 1} but not PLD{sub 2}. The inhibition of shear stress-induced c-Src phosphorylation by PP{sub 2} (a specific inhibitor of c-Src kinase) resulted in reduced PLD activity. Phosphatidic acid, produced by shear stress-induced PLD activation, stimulated mTOR signaling, and caused podocyte hypertrophy and apoptosis.
Inflationary perturbations in anisotropic, shear-free universes
International Nuclear Information System (INIS)
Pereira, Thiago S.; Carneiro, Saulo; Marugan, Guillermo A. Mena
2012-01-01
In this work, the linear and gauge-invariant theory of cosmological perturbations in a class of anisotropic and shear-free spacetimes is developed. After constructing an explicit set of complete eigenfunctions in terms of which perturbations can be expanded, we identify the effective degrees of freedom during a generic slow-roll inflationary phase. These correspond to the anisotropic equivalent of the standard Mukhanov-Sasaki variables. The associated equations of motion present a remarkable resemblance to those found in perturbed Friedmann-Robertson-Walker spacetimes with curvature, apart from the spectrum of the Laplacian, which exhibits the characteristic frequencies of the underlying geometry. In particular, it is found that the perturbations cannot develop arbitrarily large super-Hubble modes
A Piezoelectric Shear Stress Sensor
Kim, Taeyang; Saini, Aditya; Kim, Jinwook; Gopalarathnam, Ashok; Zhu, Yong; Palmieri, Frank L.; Wohl, Christopher J.; Jiang, Xiaoning
2016-01-01
In this paper, a piezoelectric sensor with a floating element was developed for shear stress measurement. The piezoelectric sensor was designed to detect the pure shear stress suppressing effects of normal stress generated from the vortex lift-up by applying opposite poling vectors to the: piezoelectric elements. The sensor was first calibrated in the lab by applying shear forces and it showed high sensitivity to shear stress (=91.3 +/- 2.1 pC/Pa) due to the high piezoelectric coefficients of PMN-33%PT (d31=-1330 pC/N). The sensor also showed almost no sensitivity to normal stress (less than 1.2 pC/Pa) because of the electromechanical symmetry of the device. The usable frequency range of the sensor is 0-800 Hz. Keywords: Piezoelectric sensor, shear stress, floating element, electromechanical symmetry
Giarola, Diana; Capuani, Domenico; Bigoni, Davide
2018-03-01
A shear band of finite length, formed inside a ductile material at a certain stage of a continued homogeneous strain, provides a dynamic perturbation to an incident wave field, which strongly influences the dynamics of the material and affects its path to failure. The investigation of this perturbation is presented for a ductile metal, with reference to the incremental mechanics of a material obeying the J2-deformation theory of plasticity (a special form of prestressed, elastic, anisotropic, and incompressible solid). The treatment originates from the derivation of integral representations relating the incremental mechanical fields at every point of the medium to the incremental displacement jump across the shear band faces, generated by an impinging wave. The boundary integral equations (under the plane strain assumption) are numerically approached through a collocation technique, which keeps into account the singularity at the shear band tips and permits the analysis of an incident wave impinging a shear band. It is shown that the presence of the shear band induces a resonance, visible in the incremental displacement field and in the stress intensity factor at the shear band tips, which promotes shear band growth. Moreover, the waves scattered by the shear band are shown to generate a fine texture of vibrations, parallel to the shear band line and propagating at a long distance from it, but leaving a sort of conical shadow zone, which emanates from the tips of the shear band.
Simulations of Granular Particles Under Cyclic Shear
Royer, John; Chaikin, Paul
2012-02-01
We perform molecular dynamics (MD) simulations of spherical grains subjected to cyclic, quasi-static shear in a 3D parallelepiped shear cell. This virtual shear cell is constructed out of rough, bumpy walls in order to minimize wall-induced ordering and has an open top surface to allow the packing to readily dilate or compact. Using a standard routine for MD simulations of frictional grains, we simulate over 1000 shear cycles, measuring grain displacements, the local packing density and changes in the contact network. Varying the shear amplitude and the friction coefficient between grains, we map out a phase diagram for the different types of behavior exhibited by these sheared grains. With low friction and high enough shear, the grains can spontaneously order into densely packed crystals. With low shear and increasing friction the packing remains disordered, yet the grains arrange themselves into configurations which exhibit limit cycles where all grains return to the same position after each full shear cycle. At higher shear and friction there is a transition to a diffusive state, where grains continue rearrange and move throughout the shear cell.
Linear sweep polarographic determination of nucleic acids using acridine orange as a bioprobe
Directory of Open Access Journals (Sweden)
WEI SUN
2007-11-01
Full Text Available The interaction of acridine orange (AO with double-stranded (ds DNA in aqueous solution was investigated by linear sweep polarography (LSP on a dropping mercury working electrode (DME. In pH 2.5 Britton–Robinson (B–R buffer solution, AO had a sensitive linear sweep polarographic reductive peak at –0.89 V (vs. SCE, which could be greatly inhibited by the addition of dsDNA, with a positive shift of the peak potential. Based on the decrease of the reductive peak current, a new quantitative electrochemical determination method for dsDNA was developed with a linear range of 2.0−20.0 mg l-1 and the linear regression equation: ΔIp” (nA = 111.90 C (mg l-1+125.32 (n = 9, γ = 0.997. The influences of commonly co-existing substances, such as metal ions, amino acid, etc., on the determination were also investigated. The method is sensitive, rapid and simple with good selectivity. The new proposed method was further applied to the detection of RNA and three synthetic samples containing dsDNA with satisfactory results. The binding number and the equilibrium constant between dsDNA and AO were calculated by an electrochemical method.
Specificity of DNA import into isolated mitochondria from plants and mammals
Directory of Open Access Journals (Sweden)
Koulintchenko M. V.
2014-01-01
Full Text Available Aim. Investigation of different features of DNA import into plant and human mitochondria, for a better understanding of mitochondrial genetics and generation of biotechnological tools. Methods. DNA up-take experiments with isolated plant mitochondria, using as substrates various sequences associated or not with the specific terminal inverted repeats (TIRs present at each end of the plant mitochondrial linear plasmids. Results. It was established that the DNA import efficiency has a non-linear dependence on DNA size. It was shown that import into plant mitochondria of DNA molecules of «medium» sizes, i. e. between 4 and 7 kb, barely has any sequence specificity: neither TIRs from the 11.6 kb Brassica plasmid, nor TIRs from the Zea mays S-plasmids influenced DNA import into Solanum tuberosum mitochondria. Conclusions. The data obtained support the hypothesis about species-specific import mechanism operating under the mitochondrial linear plasmids transfer into plant mitochondria.
Constraining primordial non-Gaussianity with cosmological weak lensing: shear and flexion
Energy Technology Data Exchange (ETDEWEB)
Fedeli, C. [Department of Astronomy, University of Florida, 211 Bryant Space Science Center, Gainesville, FL 32611-2055 (United States); Bartelmann, M. [Zentrum für Astronomie, Universität Heidelberg, Albert-Überle-Straße 2, 69120 Heidelberg (Germany); Moscardini, L., E-mail: cosimo.fedeli@astro.ufl.edu, E-mail: bartelmann@uni-heidelberg.de, E-mail: lauro.moscardini@unibo.it [Dipartimento di Astronomia, Università di Bologna, Via Ranzani 1, 40127 Bologna (Italy)
2012-10-01
being still subdominant, improves the shear constraints by ∼ 10% when added. However on such small scales the highly non-linear clustering of matter, the impact of baryonic physics, and the non-Gaussian part of the covariance matrix make any error estimation uncertain. By considering lower, and possibly more realistic, values of the flexion intrinsic shape noise results in flexion constraining power being a factor of ∼ 2 better than that of shear, and the bounds on σ{sub 8} and f{sub NL} being improved by a factor of ∼ 3 upon their combination.
Goff, R. W.
1978-01-01
The studies considered the major meteorological factors producing wind shear, methods to define and classify wind shear in terms significant from an aircraft perturbation standpoint, the significance of sensor location and scan geometry on the detection and measurement of wind shear, and the tradeoffs involved in sensor performance such as range/velocity resolution, update frequency and data averaging interval.
Hansen, J S; Daivis, Peter J; Todd, B D
2009-10-01
In this paper we present equilibrium molecular-dynamics results for the shear, rotational, and spin viscosities for fluids composed of linear molecules. The density dependence of the shear viscosity follows a stretched exponential function, whereas the rotational viscosity and the spin viscosities show approximately power-law dependencies. The frequency-dependent shear and spin viscosities are also studied. It is found that viscoelastic behavior is first manifested in the shear viscosity and that the real part of the spin viscosities features a maximum for nonzero frequency. The calculated transport coefficients are used together with the extended Navier-Stokes equations to investigate the effect of the coupling between the intrinsic angular momentum and linear momentum for highly confined fluids. Both steady and oscillatory flows are studied. It is shown, for example, that the fluid flow rate for Poiseuille flow is reduced by up to 10% in a 2 nm channel for a buta-triene fluid at density 236 kg m(-3) and temperature 306 K. The coupling effect may, therefore, become very important for nanofluidic applications.
Shear flow effect on ion temperature gradient vortices in plasmas with sheared magnetic field
DEFF Research Database (Denmark)
Chakrabarti, N.; Juul Rasmussen, J.
1999-01-01
The effect of velocity shear on ion temperature gradient (ITG) driven vortices in a nonuniform plasma in a curved, sheared magnetic field is investigated. In absence of parallel ion dynamics, vortex solutions for the ITG mode are studied analytically. It is shown that under certain conditions...... and ultimately lead to a dominating monopolar form. The effects of magnetic shear indicate it may destroy these structures. (C) 1999 American Institute of Physics....
Friction of Shear-Fracture Zones
Riikilä, T. I.; Pylväinen, J. I.; Åström, J.
2017-12-01
A shear fracture of brittle solids under compression undergoes a substantial evolution from the initial microcracking to a fully formed powder-filled shear zone. Experiments covering the entire process are relatively easy to conduct, but they are very difficult to investigate in detail. Numerically, the large strain limit has remained a challenge. An efficient simulation model and a custom-made experimental device are employed to test to what extent a shear fracture alone is sufficient to drive material to spontaneous self-lubrication. A "weak shear zone" is an important concept in geology, and a large number of explanations, specific for tectonic conditions, have been proposed. We demonstrate here that weak shear zones are far more general, and that their emergence only demands that a microscopic, i.e., fragment-scale, stress relaxation mechanism develops during the fracture process.
Amador, Carolina; Urban, Matthew W; Chen, Shigao; Greenleaf, James F
2012-03-07
Elasticity imaging methods have been used to study tissue mechanical properties and have demonstrated that tissue elasticity changes with disease state. In current shear wave elasticity imaging methods typically only shear wave speed is measured and rheological models, e.g. Kelvin-Voigt, Maxwell and Standard Linear Solid, are used to solve for tissue mechanical properties such as the shear viscoelastic complex modulus. This paper presents a method to quantify viscoelastic material properties in a model-independent way by estimating the complex shear elastic modulus over a wide frequency range using time-dependent creep response induced by acoustic radiation force. This radiation force induced creep method uses a conversion formula that is the analytic solution of a constitutive equation. The proposed method in combination with shearwave dispersion ultrasound vibrometry is used to measure the complex modulus so that knowledge of the applied radiation force magnitude is not necessary. The conversion formula is shown to be sensitive to sampling frequency and the first reliable measure in time according to numerical simulations using the Kelvin-Voigt model creep strain and compliance. Representative model-free shear complex moduli from homogeneous tissue mimicking phantoms and one excised swine kidney were obtained. This work proposes a novel model-free ultrasound-based elasticity method that does not require a rheological model with associated fitting requirements.
Optical processing of holographic lateral shear interferograms recorded by displacing an object
International Nuclear Information System (INIS)
Lyalikov, A M
2008-01-01
A new approach is considered which is used in holographic lateral shear interferometry and allows the combination of the displacement of a phase object under study during the recording of holographic interferograms with the optical processing of displaced and optically conjugate holographic interferograms. Depending on the method of optical processing of such a pair of holographic interferograms, several aberration-free interference patterns are observed, which reflect with different sensitivities variations in the light wave phase caused by the phase object. Due to the lateral shear, which is equal to or exceeds the linear size of the object, the interference patterns of the object are identical to interference patterns obtained in a two-beam, reference-wave interferometer. The possibility of using this method to control optical inhomogeneities in active crystals in solid-state lasers is studied experimentally. (interferometry)
Psoralens cleave pBR322 DNA under ultraviolet radiation
International Nuclear Information System (INIS)
Kagan, J.; Xinsheng Chen; Wang, T.P.
1992-01-01
Supercoiled (SC) pBR322 was used to probe the recent claim that 5-geranoxylpsoralen (5-GOP) did not photoreact with DNA. Contrary to expectations, 5-GOP was found to damage DNA in the presence of UV-A through two competing pathways; (a) single strand breaks, identified by the conversion of supercoiled into open circular and linear DNA, and (b) cross-linking, revealed by the fluence-dependent decrease in the extent of denaturation of the double stranded supercoiled DNA to single stranded circular DNA. In addition, a fluence-dependent modification reduced the ability of the restriction enzyme EcoR I to linearize the photosensitized DNA, and alkali-labile lesions were generated. Psoralen, 5-methoxypsoralen, and 8-methoxypsoralen, which are well-known to undergo cycloaddition to DNA, had a more pronounced effect on supercoiled DNA. Single strand breaks occurred more readily than with 5-GOP, and the surviving SC form remaining had reduced electrophoretic mobility in agarose gels. In all cases, the DNA damage was more prominent when oxygen was absent. (author)
Development and production of Lab-on-Chip systems for DNA mapping
DEFF Research Database (Denmark)
Østergaard, Peter Friis
as low as 1:200. The developed polymer systems are tested by conducting two different experiments on DNA. Since such experiments are highly sensitive, efforts have been taken in order to lower the autofluorescence of the devices, resulting in a decrease of the background signal to roughly half...... several nanochannels can be placed parallel to each other, a large number of DNA molecules can be investigated. In the second experiment, mapping is performed on human DNA in nanoslit devices. A fluorescent profile is created by heating the sample up to a temperature, where the DNA is partially denatured....... The fluorescent dye will diffuse away from the denatured regions, and by analysing these black areas, the DNA molecule can be identified and potential mutations can be found. In the nanoslits, the DNA is stretched out via a shear flow, resulting in a stretching of more than 95% of the contour length meaning...
Stability of unstably stratified shear flow between parallel plates
Energy Technology Data Exchange (ETDEWEB)
Fujimura, Kaoru; Kelly, R E
1987-09-01
The linear stability of unstably stratified shear flows between two horizontal parallel plates was investigated. Eigenvalue problems were solved numerically by making use of the expansion method in Chebyshev polynomials, and the critical Rayleigh numbers were obtained accurately in the Reynolds number range of (0.01, 100). It was found that the critical Rayleigh number increases with an increase of the Reynolds number. The result strongly supports previous stability analyses except for the analysis by Makino and Ishikawa (J. Jpn. Soc. Fluid Mech. 4 (1985) 148 - 158) in which a decrease of the critical Rayleigh number was obtained.
Stability of unstably stratified shear flow between parallel plates
International Nuclear Information System (INIS)
Fujimura, Kaoru; Kelly, R.E.
1987-01-01
The linear stability of unstably stratified shear flows between two horizontal parallel plates was investigated. Eigenvalue problems were solved numerically by making use of the expansion method in Chebyshev polynomials, and the critical Rayleigh numbers were obtained accurately in the Reynolds number range of [0.01, 100]. It was found that the critical Rayleigh number increases with an increase of the Reynolds number. The result strongly supports previous stability analyses except for the analysis by Makino and Ishikawa [J. Jpn. Soc. Fluid Mech. 4 (1985) 148 - 158] in which a decrease of the critical Rayleigh number was obtained. (author)
Directory of Open Access Journals (Sweden)
Nima Babanouri
2013-12-01
Full Text Available Three-dimensional surface geometry of rock discontinuities and its evolution with shearing are of great importance in understanding the deformability and hydro-mechanical behavior of rock masses. In the present research, surfaces of three natural rock fractures were digitized and studied before and after the direct shear test. The variography analysis of the surfaces indicated a strong non-linear trend in the data. Therefore, the spatial variability of rock fracture surfaces was decomposed to one deterministic component characterized by a base polynomial function, and one stochastic component described by the variogram of residuals. By using an image-processing technique, 343 damaged zones with different sizes, shapes, initial roughness characteristics, local stress fields, and asperity strength values were spatially located and clustered. In order to characterize the overall spatial structure of the degraded zones, the concept of ‘pseudo-zonal variogram’ was introduced. The results showed that the spatial continuity at the damage locations increased due to asperity degradation. The increase in the variogram range was anisotropic and tended to be higher in the shear direction; thus, the direction of maximum continuity rotated towards the shear direction. Finally, the regression-kriging method was used to reconstruct the morphology of the intact surfaces and degraded areas. The cross-validation error of interpolation for the damaged zones was found smaller than that obtained for the intact surface.
Effective diffusion in time-periodic linear planar flow
International Nuclear Information System (INIS)
Indeikina, A.; Chang, H.
1993-01-01
It is shown that when a point source of solute is inserted into a time-periodic, unbounded linear planar flow, the large-time, time-average transport of the solute can be described by classical anisotropic diffusion with constant effective diffusion tensors. For a given vorticity and forcing period, elongational flow is shown to be the most dispersive followed by simple shear and rotational flow. Large-time diffusivity along the major axis of the time-average concentration ellipse, whose alignment is predicted from the theory, is shown to increase with vorticity for all flows and decrease with increasing forcing frequency for elongational flow and simple shear. For the interesting case of rotational flow, there exist discrete resonant frequencies where the time-average major diffusivity reaches local maxima equal to the time-average steady flow case with zero forcing frequency
Influence of time off feed on broiler viscera weight, diameter, and shear.
Buhr, R J; Northcutt, J K; Lyon, C E; Rowland, G N
1998-05-01
The influence of time off feed on broiler viscera weight, intestinal diameter, and shear was studied by subjecting market-age male broilers (42, 44, or 48 d) to incremental feed withdrawal periods (0, 6, 12, 18, or 24 h). Body weight was determined prior to feed withdrawal and at the time of processing. After slaughter, scalding, and defeathering, the abdominal cavity was opened. Diameter and shear of the proventriculus-ventriculus junction, jejunum, and ileum segments were measured, as were gallbladder length and width. Thoracic and abdominal viscera, liver, and ventriculus weights were determined, and liver surface color was measured. Percentage body weight loss increased with longer feed withdrawal periods, as viscera, liver, and ventriculus weights decreased. Gallbladder length increased with time off feed, whereas its width did not change. Diameter of the proventriculus-ventriculus junction, jejunum, and ileum decreased with longer feed withdrawal periods. Shear values for the proventriculus-ventriculus junction, jejunum, and ileum were not influenced by time off feed. Positive correlations (P 0.4) between viscera weight and intestinal diameter were detected. Correlations between all measured parameters and shear values were not significant. Liver color measurements indicated that longer feed withdrawal periods resulted in significant linear decreases in L* (lightness), +a* (redness), and +b* (yellowness). Longer feed withdrawal periods decreased viscera weight and intestinal diameter, which would lower the potential for cutting the intestine during automated evisceration. However, the resulting greater gallbladder length (5 mm) would increase the possibility of bile contamination during evisceration.
Radicals of DNA and DNA nucleotides generated by ionising radiation
International Nuclear Information System (INIS)
Przybytniak, G.
2004-01-01
A first stage of cell processes leading to DNA damage of initiated by radical reactions. In a model system such transformations were generated by ionising radiation which involves production of electron loss and electron gain centers of the substrate and radical formation. Using cryogenic ESR spectroscopy it was found that the DNA nucleotides, which convert to radical anions upon electron capture undergo the separation of unpaired spin and charge due to protonation. Circular and linear dichroism studies enabled to conclude that iron ions(III) induce strong changes in the DNA helical structure indicating their coordination with nitrogen bases. The repair of DNA radicals produced via radiolytic oxidation, i.e. the guanine radical cation and the allyl type radical of thymine, is possible at elevated temperatures due to the involvement of sulphydryl groups. The influence of the thiol charge is then limited
IMAGE ANALYSIS FOR MODELLING SHEAR BEHAVIOUR
Directory of Open Access Journals (Sweden)
Philippe Lopez
2011-05-01
Full Text Available Through laboratory research performed over the past ten years, many of the critical links between fracture characteristics and hydromechanical and mechanical behaviour have been made for individual fractures. One of the remaining challenges at the laboratory scale is to directly link fracture morphology of shear behaviour with changes in stress and shear direction. A series of laboratory experiments were performed on cement mortar replicas of a granite sample with a natural fracture perpendicular to the axis of the core. Results show that there is a strong relationship between the fracture's geometry and its mechanical behaviour under shear stress and the resulting damage. Image analysis, geostatistical, stereological and directional data techniques are applied in combination to experimental data. The results highlight the role of geometric characteristics of the fracture surfaces (surface roughness, size, shape, locations and orientations of asperities to be damaged in shear behaviour. A notable improvement in shear understanding is that shear behaviour is controlled by the apparent dip in the shear direction of elementary facets forming the fracture.
Moore, Johnathan; Crandall, Dustin; Gill, Magdalena; Brown, Sarah; Tennant, Bryan
2018-04-01
Fluid flow in the subsurface is not well understood in the context of "impermeable" geologic media. This is especially true of formations that have undergone significant stress fluctuations due to injection or withdrawal of fluids that alters the localized pressure regime. When the pressure regime is altered, these formations, which are often already fractured, move via shear to reduce the imbalance in the stress state. While this process is known to happen, the evolution of these fractures and their effects on fluid transport are still relatively unknown. Numerous simulation and several experimental studies have been performed that characterize the relationship between shearing and permeability in fractures; while many of these studies utilize measurements of fluid flow or the starting and ending geometries of the fracture to characterize shear, they do not characterize the intermediate stages during shear. We present an experimental apparatus based on slight modifications to a commonly available Hassler core holder that allows for shearing of rocks, while measuring the hydraulic and mechanical changes to geomaterials during intermediate steps. The core holder modification employs the use of semi-circular end caps and structural supports for the confining membrane that allow for free movement of the sheared material while preventing membrane collapse. By integrating this modified core holder with a computed tomography scanner, we show a new methodology for understanding the interdependent behavior between fracture structure and flow properties during intermediate steps in shearing. We include a case study of this device function which is shown here through shearing of a fractured shale core and simultaneous observation of the mechanical changes and evolution of the hydraulic properties during shearing.
Namani, R.; Feng, Y.; Okamoto, R. J.; Jesuraj, N.; Sakiyama-Elbert, S. E.; Genin, G. M.; Bayly, P. V.
2012-01-01
The mechanical characterization of soft anisotropic materials is a fundamental challenge because of difficulties in applying mechanical loads to soft matter and the need to combine information from multiple tests. A method to characterize the linear elastic properties of transversely isotropic soft materials is proposed, based on the combination of dynamic shear testing (DST) and asymmetric indentation. The procedure was demonstrated by characterizing a nearly incompressible transversely isot...
Mean wall-shear stress measurements using the micro-pillar shear-stress sensor MPS3
International Nuclear Information System (INIS)
Große, S; Schröder, W
2008-01-01
A new sensor to measure the mean turbulent wall-shear stress in turbulent flows is described. The wall-shear stress sensor MPS 3 has been tested in a well-defined fully developed turbulent pipe flow at Reynolds numbers Re b based on the bulk velocity U b and the pipe diameter D in the range of Re b = 10 000–20 000. The results demonstrate a convincing agreement of the mean wall-shear stress obtained with the new sensor technique with analytical and experimental results from the literature. The sensor device consists of a flexible micro-pillar that extends from the wall into the viscous sublayer. Bending due to the exerting fluid forces, the pillar-tip deflection serves as a measure for the local wall-shear stress. The sensor concept, calibration techniques, the achievable accuracy and error estimates, the fields of application and the sensor limits will be discussed. Furthermore, a first estimate of the pillar dynamic response will be derived showing the potential of the sensor to also measure the turbulent fluctuating wall-shear stress
A viscoplastic shear-zone model for episodic slow slip events in oceanic subduction zones
Yin, A.; Meng, L.
2016-12-01
on the thickness, viscosity, and dynamic yield strength of the shear zone. Our model predicts a linear increase in slip with time during the landward motion and an exponential decrease in slip magnitude during the trenchward motion.
López-Barrón, Carlos R; Gurnon, A Kate; Eberle, Aaron P R; Porcar, Lionel; Wagner, Norman J
2014-04-01
We present direct measurements of the evolution of the segmental-level microstructure of a stable shear-banding polymerlike micelle solution during flow startup and cessation in the plane of flow. These measurements provide a definitive, quantitative microstructural understanding of the stages observed during flow startup: an initial elastic response with limited alignment that yields with a large stress overshoot to a homogeneous flow with associated micellar alignment that persists for approximately three relaxation times. This transient is followed by a shear (kink) band formation with a flow-aligned low-viscosity band that exhibits shear-induced concentration fluctuations and coexists with a nearly isotropic band of homogenous, highly viscoelastic micellar solution. Stable, steady banding flow is achieved only after approximately two reptation times. Flow cessation from this shear-banded state is also found to be nontrivial, exhibiting an initial fast relaxation with only minor structural relaxation, followed by a slower relaxation of the aligned micellar fluid with the equilibrium fluid's characteristic relaxation time. These measurements resolve a controversy in the literature surrounding the mechanism of shear banding in entangled wormlike micelles and, by means of comparison to existing literature, provide further insights into the mechanisms driving shear-banding instabilities in related systems. The methods and instrumentation described should find broad use in exploring complex fluid rheology and testing microstructure-based constitutive equations.
Vertical Slot Convection: A linear study
International Nuclear Information System (INIS)
McAllister, A.; Steinolfson, R.; Tajima, T.
1992-11-01
The linear stability properties of fluid convection in a vertical slot were studied. We use a Fourier-Chebychev decomposition was used to set up the linear eigenvalue problems for the Vertical Slot Convection and Benard problems. The eigenvalues, neutral stability curves, and critical point values of the Grashof number, G, and the wavenumber were determined. Plots of the real and imaginary parts of the eigenvalues as functions of G and α are given for a wide range of the Prandtl number, Pr, and special note is made of the complex mode that becomes linearly unstable above Pr ∼ 12.5. A discussion comparing different special cases facilitates the physical understanding of the VSC equations, especially the interaction of the shear-flow and buoyancy induced physics. Making use of the real and imaginary eigenvalues and the phase properties of the eigenmodes, the eigenmodes were characterized. One finds that the mode structure becomes progressively simpler with increasing Pr, with the greatest complexity in the mid ranges where the terms in the heat equation are of roughly the same size
Inductive shearing of drilling pipe
Ludtka, Gerard M.; Wilgen, John; Kisner, Roger; Mcintyre, Timothy
2016-04-19
Induction shearing may be used to cut a drillpipe at an undersea well. Electromagnetic rings may be built into a blow-out preventer (BOP) at the seafloor. The electromagnetic rings create a magnetic field through the drillpipe and may transfer sufficient energy to change the state of the metal drillpipe to shear the drillpipe. After shearing the drillpipe, the drillpipe may be sealed to prevent further leakage of well contents.
Friction welding; Magnesium; Finite element; Shear test.
Directory of Open Access Journals (Sweden)
Leonardo Contri Campanelli
2013-06-01
Full Text Available Friction spot welding (FSpW is one of the most recently developed solid state joining technologies. In this work, based on former publications, a computer aided draft and engineering resource is used to model a FSpW joint on AZ31 magnesium alloy sheets and subsequently submit the assembly to a typical shear test loading, using a linear elastic model, in order to conceive mechanical tests results. Finite element analysis shows that the plastic flow is concentrated on the welded zone periphery where yield strength is reached. It is supposed that “through the weld” and “circumferential pull-out” variants should be the main failure behaviors, although mechanical testing may provide other types of fracture due to metallurgical features.
Tripathi, B. B.; Espíndola, D.; Pinton, G. F.
2017-11-01
The recent discovery of shear shock wave generation and propagation in the porcine brain suggests that this new shock phenomenology may be responsible for a broad range of traumatic injuries. Blast-induced head movement can indirectly lead to shear wave generation in the brain, which could be a primary mechanism for injury. Shear shock waves amplify the local acceleration deep in the brain by up to a factor of 8.5, which may tear and damage neurons. Currently, there are numerical methods that can model compressional shock waves, such as comparatively well-studied blast waves, but there are no numerical full-wave solvers that can simulate nonlinear shear shock waves in soft solids. Unlike simplified representations, e.g., retarded time, full-wave representations describe fundamental physical behavior such as reflection and heterogeneities. Here we present a piecewise parabolic method-based solver for one-dimensional linearly polarized nonlinear shear wave in a homogeneous medium and with empirical frequency-dependent attenuation. This method has the advantage of being higher order and more directly extendable to multiple dimensions and heterogeneous media. The proposed numerical scheme is validated analytically and experimentally and compared to other shock capturing methods. A Riemann step-shock problem is used to characterize the numerical dissipation. This dissipation is then tuned to be negligible with respect to the physical attenuation by choosing an appropriate grid spacing. The numerical results are compared to ultrasound-based experiments that measure planar polarized shear shock wave propagation in a tissue-mimicking gelatin phantom. Good agreement is found between numerical results and experiment across a 40 mm propagation distance. We anticipate that the proposed method will be a starting point for the development of a two- and three-dimensional full-wave code for the propagation of nonlinear shear waves in heterogeneous media.
Rosado-Mendez, Ivan M.; Carlson, Lindsey C.; Woo, Kaitlin M.; Santoso, Andrew P.; Guerrero, Quinton W.; Palmeri, Mark L.; Feltovich, Helen; Hall, Timothy J.
2018-04-01
Abnormal parturition, e.g. pre- or post-term birth, is associated with maternal and neonatal morbidity and increased economic burden. This could potentially be prevented by accurate detection of abnormal softening of the uterine cervix. Shear wave elasticity imaging (SWEI) techniques that quantify tissue softness, such as shear wave speed (SWS) measurement, are promising for evaluation of the cervix. Still, interpretation of results can be complicated by biological variability (i.e. spatial variations of cervix stiffness, parity), as well as by experimental factors (i.e. type of transducer, posture during scanning). Here we investigated the ability of SWEI to detect cervical softening, as well as sources of SWS variability that can affect this task, in the pregnant and nonpregnant Rhesus macaque. Specifically, we evaluated SWS differences when imaging the cervix transabdominally with a typical linear array abdominal transducer, and transrectally with a prototype intracavitary linear array transducer. Linear mixed effects (LME) models were used to model SWS as a function of menstrual cycle day (in nonpregnant animals) and gestational age (in pregnant animals). Other variables included parity, shear wave direction, and cervix side (anterior versus posterior). In the nonpregnant cervix, the LME model indicated that SWS increased by 2% (95% confidence interval 0–3%) per day, starting eight days before menstruation. During pregnancy, SWS significantly decreased at a rate of 6% (95% CI 5–7%) per week (intracavitary approach) and 3% (95% CI 2–4%) per week (transabdominal approach), and interactions between the scanning approach and other fixed effects were also significant. These results suggest that, while absolute SWS values are influenced by factors such as scanning approach and SWEI implementation, these sources of variability do not compromise the sensitivity of SWEI to cervical softening. Our results also highlight the importance of standardizing SWEI
Non-homogeneous flow profiles in sheared bacterial suspensions
Samanta, Devranjan; Cheng, Xiang
Bacterial suspensions under shear exhibit interesting rheological behaviors including the remarkable ``superfluidic'' state with vanishing viscosity at low shear rates. Theoretical studies have shown that such ``superfluidic'' state is linked with non-homogeneous shear flows, which are induced by coupling between nematic order of active fluids and hydrodynamics of shear flows. However, although bulk rheology of bacterial suspensions has been experimentally studied, shear profiles within bacterial suspensions have not been explored so far. Here, we experimentally investigate the flow behaviors of E. coli suspensions under planar oscillatory shear. Using confocal microscopy and PIV, we measure velocity profiles across gap between two shear plates. We find that with increasing shear rates, high-concentration bacterial suspensions exhibit an array of non-homogeneous flow behaviors like yield-stress flows and shear banding. We show that these non-homogeneous flows are due to collective motion of bacterial suspensions. The phase diagram of sheared bacterial suspensions is systematically mapped as functions of shear rates an bacterial concentrations. Our experiments provide new insights into rheology of bacterial suspensions and shed light on shear induced dynamics of active fluids. Chemical Engineering and Material Science department.
Yong, Huadong; Zhao, Meng; Jing, Ze; Zhou, Youhe
2014-09-01
In this paper, the electromagnetic response and shielding behaviour of superconductor-ferromagnetic bilayer structure are studied. The magnetomechanical coupling in ferromagnetic materials is also considered. Based on the linear piezomagnetic coupling model and anti-plane shear deformation, the current density and magnetic field in superconducting strip are obtained firstly. The effect of shear stress on the magnetization of strip is discussed. Then, we consider the magnetic cloak for superconductor-ferromagnetic bilayer structure. The magnetic permeability of ferromagnetic material is obtained for perfect cloaking in uniform magnetic field with magnetomechanical coupling in ferromagnet. The simulation results show that the electromagnetic response in superconductors will change by applying the stress only to the ferromagnetic material. In addition, the performance of invisibility of structure for non-uniform field will be affected by mechanical stress. It may provide a method to achieve tunability of superconducting properties with mechanical loadings.
DNA probe for strain typing of Cryptococcus neoformans.
Varma, A; Kwon-Chung, K J
1992-01-01
A 7-kb linear plasmid, harbored by a URA5 transformant, hybridized to all the chromosomes of Cryptococcus neoformans separated by contour-clamped homogeneous electric field electrophoresis. Its linear maintenance was determined to have been facilitated by the presence of telomere-like sequences at its free ends. Hybridization of this plasmid to AccI-digested genomic DNAs of 26 C. neoformans strains generated 21 unique DNA fingerprints. The DNA fingerprints of isolates within the same serotype...
Ye, W; Bel-Brunon, A; Catheline, S; Combescure, A; Rochette, M
2018-01-01
In this study, visco-hyperelastic Landau's model, which is widely used in acoustical physic field, is introduced into a finite element formulation. It is designed to model the nonlinear behaviour of finite amplitude shear waves in soft solids, typically, in biological tissues. This law is used in finite element models based on elastography, experiments reported in Jacob et al, the simulations results show a good agreement with the experimental study: It is observed in both that a plane shear wave generates only odd harmonics and a nonplane wave generates both odd and even harmonics in the spectral domain. In the second part, a parametric study is performed to analyse the influence of different factors on the generation of odd harmonics of plane wave. A quantitative relation is fitted between the odd harmonic amplitudes and the non-linear elastic parameter of Landau's model, which provides a practical guideline to identify the non-linearity of homogeneous tissues using elastography experiment. Copyright © 2017 John Wiley & Sons, Ltd.
Lacouture, Jean-Christoph; Johnson, Paul A; Cohen-Tenoudji, Frederic
2003-03-01
The monitoring of both linear and nonlinear elastic properties of a high performance concrete during curing is presented by application of compressional and shear waves. To follow the linear elastic behavior, both compressional and shear waves are used in wide band pulse echo mode. Through the value of the complex reflection coefficient between the cell material (Lucite) and the concrete within the cell, the elastic moduli are calculated. Simultaneously, the transmission of a continuous compressional sine wave at progressively increasing drive levels permits us to calculate the nonlinear properties by extracting the harmonics amplitudes of the signal. Information regarding the chemical evolution of the concrete based upon the reaction of hydration of cement is obtained by monitoring the temperature inside the sample. These different types of measurements are linked together to interpret the critical behavior.
Horvath, P.; Latham, G. V.; Nakamura, Y.; Dorman, H. J.
1980-01-01
The horizontal-to-vertical amplitude ratios of the long-period seismograms are reexamined to determine the shear wave velocity distributions at the Apollo 12, 14, 15, and 16 lunar landing sites. Average spectral ratios, computed from a number of impact signals, were compared with spectral ratios calculated for the fundamental mode Rayleigh waves in media consisting of homogeneous, isotropic, horizontal layers. The shear velocities of the best fitting models at the different sites resemble each other and differ from the average for all sites by not more than 20% except for the bottom layer at station 14. The shear velocities increase from 40 m/s at the surface to about 400 m/s at depths between 95 and 160 m at the various sites. Within this depth range the velocity-depth functions are well represented by two piecewise linear segments, although the presence of first-order discontinuities cannot be ruled out.
Study of shear thickening behavior in colloidal suspensions
Directory of Open Access Journals (Sweden)
N Maleki Jirsaraee
2015-01-01
Full Text Available We studied the shear thickening behavior of the nano silica suspension (silica nanoparticles 12 nm in size suspended in ethylene glycol under steady shear. The critical shear rate for transition into shear thickening phase was determined at different concentrations and temperatures. The effect of temperature and concentration was studied on the shear thickening behavior. In silica suspension, it was observed that all the samples had a transition into shear thickening phase and also by increasing the temperature, critical shear rate increased and viscosity decreased. Our observations showed that movement in silica suspension was Brownian and temperature could cause a delay in transition into shear thickening phase. Yet, we observed that increasing the concentration would decrease critical shear rate and increase viscosity. Increasing temperature increased Brownian forces and increasing concentration increased hydrodynamic forces, confirming the contrast between these two forces for transition into shear thickening phase for the suspensions containing nano particles
Monitoring the lesion formation during histotripsy treatment using shear wave imaging
Arnal, Bastien; Lee, Wei-Ning; Pernot, Mathieu; Fink, Mathias; Tanter, Mickael
2012-11-01
Monitoring the lesion formation induced by histotripsy has mainly relied on the quantitative change in backscatter intensity using ultrasound B-mode imaging. However, how the mechanical properties of the histotripsy-treated tissue region alter during the procedure is yet to be fully investigated. We thus proposed here to monitor such a therapeutic process based on shear modulus estimated by shear wave imaging (SWI). In the therapeutic procedure, a single-element piezo-composite focused transducer (Imasonic, Besançon, France) with a center frequency of 660 kHz, a focal length of 45 mm, and an fnumber of 1 was driven by a function generator (AFG 3101, Tektronix, Beaverton, OR) and a gated RF power amplifier (GA-2500A, RITEC Inc., USA) to generate ultrasound histotripsy pulses. Histotripsy pulses were delivered for 20 seconds and then followed by a 30-second pause and a rapid monitoring step. Such a treatment and monitoring scheme was repeated for 10 mins. Both the reference measurement and monitoring were realized by SWI, where plane shear waves were generated by an 8 MHz linear array probe connected to a prototype ultrasound scanner, and acquired at a frame rate of 10000 Hz. Shear modulus was estimated and mapped in 2D through a time-of-flight algorithm. Gelatin (8%)-agar (2%) phantoms and ex-vivo porcine liver samples were tested. Regions of interests (ROI's) of 2 mm-by-2 mm in both untreated and treated regions were selected to compute the contrast-to-noise ratio (CNR). In all three scenarios where different PD's and PRF's were implemented, during the first 100 seconds of the treatment, 50% decrease in the shear modulus within the histotripsy-targeted zone was already observed, and the CNR of the shear modulus increased by 18 dB. In contrast, the backscatter intensity began to reduce and the corresponding CNR was found to increase by 6 dB only after 120 seconds of treatment. The results demonstrated that SWI can map quantitatively the change of mechanical
Control of a three-dimensional turbulent shear layer by means of oblique vortices
Jürgens, Werner; Kaltenbach, Hans-Jakob
2018-04-01
The effect of local forcing on the separated, three-dimensional shear layer downstream of a backward-facing step is investigated by means of large-eddy simulation for a Reynolds number based on the step height of 10,700. The step edge is either oriented normal to the approaching turbulent boundary layer or swept at an angle of 40°. Oblique vortices with different orientation and spacing are generated by wavelike suction and blowing of fluid through an edge parallel slot. The vortices exhibit a complex three-dimensional structure, but they can be characterized by a wavevector in a horizontal section plane. In order to determine the step-normal component of the wavevector, a method is developed based on phase averages. The dependence of the wavevector on the forcing parameters can be described in terms of a dispersion relation, the structure of which indicates that the disturbances are mainly convected through the fluid. The introduced vortices reduce the size of the recirculation region by up to 38%. In both the planar and the swept case, the most efficient of the studied forcings consists of vortices which propagate in a direction that deviates by more than 50° from the step normal. These vortices exhibit a spacing in the order of 2.5 step heights. The upstream shift of the reattachment line can be explained by increased mixing and momentum transport inside the shear layer which is reflected in high levels of the Reynolds shear stress -ρ \\overline{u'v'}. The position of the maximum of the coherent shear stress is found to depend linearly on the wavelength, similar to two-dimensional free shear layers.
Onset of shear thinning in glassy liquids: Shear-induced small reduction of effective density.
Furukawa, Akira
2017-01-01
We propose a simple mechanism for describing the onset of shear thinning in a high-density glassy liquid. In a shear flow, along the compression axis, the overlap between neighboring particles is more enhanced than that at equilibrium, meaning that the "effective" size is reduced along this axis. On the other hand, along the extension axis perpendicular to the compression axis, the average structural configurations are stretched, but it does not indicate the expansion of the "effective" size itself. This asymmetric shear flow effect for particles results in a small reduction of the "effective" density. Because, in glass-forming liquids, the structural relaxation time τ_{α} strongly depends on the density ρ, even a very small reduction of the effective density should lead to a significant decrease of the relaxation time under shear flow. We predict that the crossover shear rate from Newtonian to non-Newtonian flow behaviors is given by γ[over ̇]_{c}=[ρ(∂τ_{α}/∂ρ)]^{-1}, which can be much smaller than 1/τ_{α} near the glass transition point. It is shown that this prediction is consistent with the results of molecular dynamics simulations.
Effect of Boundary Condition on the Shear Behaviour of Rock Joints in the Direct Shear Test
Bahaaddini, M.
2017-05-01
The common method for determination of the mechanical properties of the rock joints is the direct shear test. This paper aims to study the effect of boundary condition on the results of direct shear tests. Experimental studies undertaken in this research showed that the peak shear strength is mostly overestimated. This problem is more pronounced for steep asperities and under high normal stresses. Investigation of the failure mode of these samples showed that tensile cracks are generated at the boundary of sample close to the specimen holders and propagated inside the intact materials. In order to discover the reason of observed failure mechanism in experiments, the direct shear test was simulated using PFC2D. Results of numerical models showed that the gap zone size between the upper and lower specimen holders has a significant effect on the shear mechanism. For the high gap size, stresses concentrate at the vicinity of the tips of specimen holders and result in generation and propagation of tensile cracks inside the intact material. However, by reducing the gap size, stresses are concentrated on asperities, and damage of specimen at its boundary is not observed. Results of this paper show that understanding the shear mechanism of rock joints is an essential step prior to interpreting the results of direct shear tests.
Ratio of bulk to shear viscosity in a quasigluon plasma: from weak to strong coupling
Bluhm, M; Redlich, K
2012-01-01
The ratio of bulk to shear viscosity is expected to exhibit a different behaviour in weakly and in strongly coupled systems. This can be expressed by the dependence of the ratio on the squared sound velocity. In the high temperature QCD plasma at small running coupling, the viscosity ratio is uniquely determined by a quadratic dependence on the conformality measure, whereas in certain strongly coupled and nearly conformal theories this dependence is linear. Employing an effective kinetic theory of quasiparticle excitations with medium-modified dispersion relation, we analyze the ratio of bulk to shear viscosity of the gluon plasma. We show that in this approach the viscosity ratio comprises both dependencies found by means of weak coupling perturbative and strong coupling holographic techniques.
Dilatancy of Shear Transformations in a Colloidal Glass
Lu, Y. Z.; Jiang, M. Q.; Lu, X.; Qin, Z. X.; Huang, Y. J.; Shen, J.
2018-01-01
Shear transformations, as fundamental rearrangement events operating in local regions, hold the key of plastic flow of amorphous solids. Despite their importance, the dynamic features of shear transformations are far from clear, which is the focus of the present study. Here, we use a colloidal glass under shear as the prototype to directly observe the shear-transformation events in real space. By tracing the colloidal-particle rearrangements, we quantitatively determine two basic properties of shear transformations: local shear strain and dilatation (or free volume). It is revealed that the local free volume undergoes a significantly temporary increase prior to shear transformations, eventually leading to a jump of local shear strain. We clearly demonstrate that shear transformations have no memory of the initial free volume of local regions. Instead, their emergence strongly depends on the dilatancy ability of these local regions, i.e., the dynamic creation of free volume. More specifically, the particles processing the high dilatancy ability directly participate in subsequent shear transformations. These results experimentally enrich Argon's statement about the dilatancy nature of shear transformations and also shed insight into the structural origin of amorphous plasticity.
Rheometry-PIV of shear-thickening wormlike micelles.
Marín-Santibañez, Benjamín M; Pérez-Gonzalez, José; de Vargas, Lourdes; Rodríguez-Gonzalez, Francisco; Huelsz, Guadalupe
2006-04-25
The shear-thickening behavior of an equimolar semidilute aqueous solution of 40 mM/L cetylpyridinium chloride and sodium salicylate was studied in this work by using a combined method of rheometry and particle image velocimetry (PIV). Experiments were conducted at 27.5 degrees C with Couette, vane-bob, and capillary rheometers in order to explore a wide shear stress range as well as the effect of boundary conditions and time of flow on the creation and destruction of shear-induced structures (SIS). The use of the combined method of capillary rheometry with PIV allowed the detection of fast spatial and temporal variations in the flow kinematics, which are related to the shear-thickening behavior and the dynamics of the SIS but are not distinguished by pure rheometrical measurements. A rich-in-details flow curve was found for this solution, which includes five different regimes. Namely, at very low shear rates a Newtonian behavior was found, followed by a shear thinning one in the second regime. In the third, shear banding was observed, which served as a precursor of the SIS and shear-thickening. The fourth and fifth regimes in the flow curve were separated by a spurtlike behavior, and they clearly evidenced the existence of shear-thickening accompanied by stick-slip oscillations at the wall of the rheometer, which subsequently produced variations in the shear rate under shear stress controlled flow. Such a stick-slip phenomenon prevailed up to the highest shear stresses used in this work and was reflected in asymmetric velocity profiles with spatial and temporal variations linked to the dynamics of creation and breakage of the SIS. The presence of apparent slip at the wall of the rheometer provides an energy release mechanism which leads to breakage of the SIS, followed by their further reformation during the stick part of the cycles. In addition, PIV measurements allowed the detection of apparent slip at the wall, as well as mechanical failures in the bulk of the
DEFF Research Database (Denmark)
Lazarov, Boyan Stefanov; Ditlevsen, Ove
2005-01-01
The object of study is a stationary Gaussian white noise excited plane multistory shear frame with a large number of rigid traverses. All the traverse-connecting columns have finite symmetrical yield limits except the columns in one or more of the bottom floors. The columns behave linearly elasti...
Effect of shear strain on the deflection of a clamped magnetostrictive film-substrate system
International Nuclear Information System (INIS)
Ming Zhenghui; Ming Li; Bo Zou; Xia Luo
2011-01-01
The effect of in-plane shear strain of a clamped bimorph on the deflection produced by magnetization of the film is investigated. The deflection is found by minimizing the Gibbs free energy with respect to four parameters, strains and curvatures along x and y directions at the interface, by assuming that the curvature in the y direction varies as a function of aspect ratio w/l along x. A set of standard linear equations of four parameters are obtained and the deflection is expressed in terms of the four parameters by solving the equations using Cramer rules. The inconsistencies pointed out by previous authors are also reviewed. For actuators made of thick and short clamped film-substrate system, the in-plane shear deformation should not be omitted. The present calculation model can give a relatively simple and accurate prediction of deflection for thick and short specimens of aspect ratio w/l<10, which supports the results obtained by finite element modeling. - Highlights: → We model the deflection of a thick magnetostrictive film-substrate cantilever plate. → Total stress along z from magnetic field is not zero without external force. → Effect of in-plane shear strain in calculating deflection examined. → Analytical solution of deflection obtained by assuming a curvature function. → Shear strain for short cantilever film-substrate plate considered.
DNA confinement in nanochannels: physics and biological applications
DEFF Research Database (Denmark)
Reisner, Walter; Pedersen, Jonas Nyvold; Austin, Robert H
2012-01-01
in nanochannels, creating a linear unscrolling of the genome along the channel for analysis. We will first review the fundamental physics of DNA nanochannel confinement—including the effect of varying ionic strength—and then discuss recent applications of these systems to genomic mapping. Apart from the intense...... direct assessment of the genome in its native state). In this review, we will discuss how the information contained in genomic-length single DNA molecules can be accessed via physical confinement in nanochannels. Due to self-avoidance interactions, DNA molecules will stretch out when confined...... biological interest in extracting linear sequence information from elongated DNA molecules, from a physics view these systems are fascinating as they enable probing of single-molecule conformation in environments with dimensions that intersect key physical length-scales in the 1 nm to 100μm range. (Some...
Behavior of Tilted Angle Shear Connectors
Khorramian, Koosha; Maleki, Shervin; Shariati, Mahdi; Ramli Sulong, N. H.
2015-01-01
According to recent researches, angle shear connectors are appropriate to transfer longitudinal shear forces across the steel-concrete interface. Angle steel profile has been used in different positions as L-shaped or C-shaped shear connectors. The application of angle shear connectors in tilted positions is of interest in this study. This study investigates the behaviour of tilted-shaped angle shear connectors under monotonic loading using experimental push out tests. Eight push-out specimens are tested to investigate the effects of different angle parameters on the ultimate load capacity of connectors. Two different tilted angles of 112.5 and 135 degrees between the angle leg and steel beam are considered. In addition, angle sizes and lengths are varied. Two different failure modes were observed consisting of concrete crushing-splitting and connector fracture. By increasing the size of connector, the maximum load increased for most cases. In general, the 135 degrees tilted angle shear connectors have a higher strength and stiffness than the 112.5 degrees type. PMID:26642193
Behavior of Tilted Angle Shear Connectors.
Directory of Open Access Journals (Sweden)
Koosha Khorramian
Full Text Available According to recent researches, angle shear connectors are appropriate to transfer longitudinal shear forces across the steel-concrete interface. Angle steel profile has been used in different positions as L-shaped or C-shaped shear connectors. The application of angle shear connectors in tilted positions is of interest in this study. This study investigates the behaviour of tilted-shaped angle shear connectors under monotonic loading using experimental push out tests. Eight push-out specimens are tested to investigate the effects of different angle parameters on the ultimate load capacity of connectors. Two different tilted angles of 112.5 and 135 degrees between the angle leg and steel beam are considered. In addition, angle sizes and lengths are varied. Two different failure modes were observed consisting of concrete crushing-splitting and connector fracture. By increasing the size of connector, the maximum load increased for most cases. In general, the 135 degrees tilted angle shear connectors have a higher strength and stiffness than the 112.5 degrees type.
Shear stress from hot-film sensors in unsteady gas flow
International Nuclear Information System (INIS)
Cole, K.D.
1991-01-01
In this paper a data analysis procedure is proposed for obtaining unsteady wall shear stress from flush-mounted hot-film anemometer measurements. The method is based on a two-dimensional heat transfer model of the unsteady heat transfer in both the hot-film sensor and in the gas flow. The sensor thermal properties are found from preliminary calibration experiments at zero flow. Numerical experiments are used to demonstrate the data analysis method using simulated sensor signals that are corrupted with noise. The numerical experiments show that noise in the data propagates into the results so that data smoothing may be important in analyzing experimental data. Because the data analysis procedure is linear, a linear digital filter is constructed that could be used for processing large amounts of experimental data. However, further refinements will be needed before the method can be applied to experimental data
Xu, Chet C; Chan, Roger W; Sun, Han; Zhan, Xiaowei
2017-11-01
A mixed-effects model approach was introduced in this study for the statistical analysis of rheological data of vocal fold tissues, in order to account for the data correlation caused by multiple measurements of each tissue sample across the test frequency range. Such data correlation had often been overlooked in previous studies in the past decades. The viscoelastic shear properties of the vocal fold lamina propria of two commonly used laryngeal research animal species (i.e. rabbit, porcine) were measured by a linear, controlled-strain simple-shear rheometer. Along with published canine and human rheological data, the vocal fold viscoelastic shear moduli of these animal species were compared to those of human over a frequency range of 1-250Hz using the mixed-effects models. Our results indicated that tissues of the rabbit, canine and porcine vocal fold lamina propria were significantly stiffer and more viscous than those of human. Mixed-effects models were shown to be able to more accurately analyze rheological data generated from repeated measurements. Copyright © 2017 Elsevier Ltd. All rights reserved.
Self-sustained collisional drift-wave turbulence in a sheared magnetic field
International Nuclear Information System (INIS)
Scott, B.D.
1990-01-01
Although collisional drift waves in a sheared slab configuration are linearly damped, it is found that the corresponding turbulence is self-sustaining if initialized at nonlinear amplitude. The influence of the free-energy source represented by the temperature and density gradients on the turbulent system involving bidirectional spectral energy transfer is responsible for this change of regime. Several important features of tokamak edge fluctuations are reproduced by these single-rational-surface nonlinear dynamics. As a result, drift-wave turbulence must still be considered as an underlying dynamic of anomalous transport in tokamak edges
Kelemen, P. B.; Hirth, G.
2004-12-01
Localized ductile shear zones with widths of cm to m are observed in exposures of Earth's shallow mantle (e.g., Kelemen & Dick JGR 95; Vissers et al. Tectonophys 95) and dredged from oceanic fracture zones (e.g., Jaroslow et al. Tectonophys 96). These are mylonitic (grain size 10 to 100 microns) and record mineral cooling temperatures from 1100 to 600 C. Pseudotachylites in a mantle shear zone show that shear heating temperatures can exceed the mantle solidus (e.g., Obata & Karato Tectonophys 95). Simple shear, recrystallization, and grain boundary sliding all decrease the spacing between pyroxenes, so olivine grain growth at lower stress is inhibited; thus, once formed, these shear zones do not "heal" on geological time scales. Reasoning that grain-size sensitive creep will be localized within these shear zones, rather than host rocks (grain size 1 to 10 mm), and inspired by the work of Whitehead & Gans (GJRAS 74), we thought these might undergo repeated shear heating instabilities. In this view, as elastic stress increases, the shear zone weakens via shear heating; rapid deformation of the weak shear zone releases most stored elastic stress; lower stress and strain rate coupled with diffusion of heat into host rocks leads to cooling and strengthening, after which the cycle repeats. We constructed a simple numerical model incorporating olivine flow laws for dislocation creep, diffusion creep, grain boundary sliding, and low T plasticity. We assumed that viscous deformation remains localized in shear zones, surrounded by host rocks undergoing elastic deformation. We fixed the velocity along one side of an elastic half space, and calculated stress due to elastic strain. This stress drives viscous deformation in a shear zone of specified width. Shear heating and thermal diffusion control temperature evolution in the shear zone and host rocks. A maximum of 1400 C (where substantial melting of peridotite would occur) is imposed. Grain size evolves during dislocation
International Nuclear Information System (INIS)
Hoover, W.G.; Evans, D.J.; Hickman, R.B.; Ladd, A.J.C.; Ashurst, W.T.; Moran, B.
1980-01-01
A new Hamiltonian method for deformation simulations is related to the Green-Kubo fluctuation theory through perturbation theory and linear-response theory. Numerical results for the bulk and shear viscosity coefficients are compared to corresponding Green-Kubo calculations. Both viscosity coefficients depend similarly on frequency, in a way consistent with enhanced ''long-time tails.''
International Nuclear Information System (INIS)
Burrell, K.H.
1996-11-01
One of the scientific success stories of fusion research over the past decade is the development of the ExB shear stabilization model to explain the formation of transport barriers in magnetic confinement devices. This model was originally developed to explain the transport barrier formed at the plasma edge in tokamaks after the L (low) to H (high) transition. This concept has the universality needed to explain the edge transport barriers seen in limiter and divertor tokamaks, stellarators, and mirror machines. More recently, this model has been applied to explain the further confinement improvement from H (high)-mode to VH (very high)-mode seen in some tokamaks, where the edge transport barrier becomes wider. Most recently, this paradigm has been applied to the core transport barriers formed in plasmas with negative or low magnetic shear in the plasma core. These examples of confinement improvement are of considerable physical interest; it is not often that a system self-organizes to a higher energy state with reduced turbulence and transport when an additional source of free energy is applied to it. The transport decrease that is associated with ExB velocity shear effects also has significant practical consequences for fusion research. The fundamental physics involved in transport reduction is the effect of ExB shear on the growth, radial extent and phase correlation of turbulent eddies in the plasma. The same fundamental transport reduction process can be operational in various portions of the plasma because there are a number ways to change the radial electric field Er. An important theme in this area is the synergistic effect of ExB velocity shear and magnetic shear. Although the ExB velocity shear appears to have an effect on broader classes of microturbulence, magnetic shear can mitigate some potentially harmful effects of ExB velocity shear and facilitate turbulence stabilization
Low-rise shear wall failure modes
International Nuclear Information System (INIS)
Farrar, C.R.; Hashimoto, P.S.; Reed, J.W.
1991-01-01
A summary of the data that are available concerning the structural response of low-rise shear walls is presented. This data will be used to address two failure modes associated with the shear wall structures. First, data concerning the seismic capacity of the shear walls with emphasis on excessive deformations that can cause equipment failure are examined. Second, data concerning the dynamic properties of shear walls (stiffness and damping) that are necessary to compute the seismic inputs to attached equipment are summarized. This case addresses the failure of equipment when the structure remains functional. 23 refs
Chirality-specific lift forces of helix under shear flows: Helix perpendicular to shear plane.
Zhang, Qi-Yi
2017-02-01
Chiral objects in shear flow experience a chirality-specific lift force. Shear flows past helices in a low Reynolds number regime were studied using slender-body theory. The chirality-specific lift forces in the vorticity direction experienced by helices are dominated by a set of helix geometry parameters: helix radius, pitch length, number of turns, and helix phase angle. Its analytical formula is given. The chirality-specific forces are the physical reasons for the chiral separation of helices in shear flow. Our results are well supported by the latest experimental observations. © 2016 Wiley Periodicals, Inc.
Modeling combined tension-shear failure of ductile materials
International Nuclear Information System (INIS)
Partom, Y
2014-01-01
Failure of ductile materials is usually expressed in terms of effective plastic strain. Ductile materials can fail by two different failure modes, shear failure and tensile failure. Under dynamic loading shear failure has to do with shear localization and formation of adiabatic shear bands. In these bands plastic strain rate is very high, dissipative heating is extensive, and shear strength is lost. Shear localization starts at a certain value of effective plastic strain, when thermal softening overcomes strain hardening. Shear failure is therefore represented in terms of effective plastic strain. On the other hand, tensile failure comes about by void growth under tension. For voids in a tension field there is a threshold state of the remote field for which voids grow spontaneously (cavitation), and the material there fails. Cavitation depends on the remote field stress components and on the flow stress. In this way failure in tension is related to shear strength and to failure in shear. Here we first evaluate the cavitation threshold for different remote field situations, using 2D numerical simulations with a hydro code. We then use the results to compute examples of rate dependent tension-shear failure of a ductile material.
International Nuclear Information System (INIS)
Kurita, Hirofumi; Yasuda, Hachiro; Takashima, Kazunori; Katsura, Shinji; Mizuno, Akira
2009-01-01
We carried out an individual DNA manipulation using an optical trapping for a microbead. This manipulation system is based on a fluorescent microscopy equipped with an IR laser. Both ends of linear DNA molecule were labeled with a biotin and a thiol group, respectively. Then the biotinylated end was attached to a microbead, and the other was immobilized on a thiol-linkable glass surface. We controlled the form of an individual DNA molecule by moving the focal point of IR laser, which trapped the microbead. In addition, we applied single-molecule approach to analyze DNA hydrolysis. We also used microchannel for single-molecule observation of DNA hydrolysis. The shortening of DNA in length caused by enzymatic hydrolysis was observed in real-time. The single-molecule DNA manipulation should contribute to elucidate detailed mechanisms of DNA-protein interactions
Role of E x B Shear and Magnetic Shear in the Formation of Transport Barriers in DIII-D
International Nuclear Information System (INIS)
Burrell, K.H.
2005-01-01
Development of the E x B shear stabilization model to explain the formation of transport barriers in magnetic confinement devices is a major achievement of fusion research. This concept has the universality needed to explain the H-mode edge transport barriers seen in limiter and divertor tokamaks, stellarators, and mirror machines; the broader edge transport barrier seen in VH-mode plasmas; and the core transport barriers formed in tokamaks with low or negative magnetic shear. These examples of confinement improvement are of considerable physical interest; it is not often that a system self-organizes to reduce transport when an additional source of free energy is applied to it. The transport decrease associated with E x B velocity shear is also of great practical benefit to fusion research. The fundamental physics involved in transport reduction is the effect of E x B shear on the growth, radial extent, and phase correlation of turbulent eddies in the plasma. The same basic transport reduction process can be operational in various portions of the plasma because there are a number of ways to change the radial electric field E r . An important theme in this area is the synergistic effect of E x B velocity shear and magnetic shear. Although the E x B velocity shear appears to have an effect on broader classes of microturbulence, magnetic shear can mitigate some potentially harmful effects of E x B velocity shear and facilitate turbulence stabilization. The experimental results on DIII-D and other devices are generally consistent with the basic theoretical models
A dual role of extracellular DNA during biofilm formation of Neisseria meningitidis
DEFF Research Database (Denmark)
Lappann, M.; Claus, H.; van Alen, T.
2010-01-01
formation, whereas biofilm formation of cc with low point prevalence (ST-8 cc and ST-11 cc) was eDNA-independent. For initial biofilm formation, a ST-32 cc type strain, but not a ST-11 type strain, utilized eDNA. The release of eDNA was mediated by lytic transglycosylase and cytoplasmic N......-acetylmuramyl-l-alanine amidase genes. In late biofilms, outer membrane phospholipase A-dependent autolysis, which was observed in most cc, but not in ST-8 and ST-11 strains, was required for shear force resistance of microcolonies. Taken together, N. meningitidis evolved two different biofilm formation strategies, an e....... On the contrary, spreaders (ST-11 and ST-8 cc) are unable to use eDNA for biofilm formation and might compensate for poor colonization properties by high transmission rates....
van der Ende, A.; Langeveld, S. A.; Teertstra, R.; van Arkel, G. A.; Weisbeek, P. J.
1981-01-01
Incubation of phi X174 replication form I DNA with the A* protein of phi X174 in the presence of MN2+ results in the formation of three different types of DNA molecules: open circular form DNA (RFII), linear form DNA (RFIII) and the relaxed covalently closed form DNA (RFIV). The RFII and RFIII DNAs
Crosswind Shear Gradient Affect on Wake Vortices
Proctor, Fred H.; Ahmad, Nashat N.
2011-01-01
Parametric simulations with a Large Eddy Simulation (LES) model are used to explore the influence of crosswind shear on aircraft wake vortices. Previous studies based on field measurements, laboratory experiments, as well as LES, have shown that the vertical gradient of crosswind shear, i.e. the second vertical derivative of the environmental crosswind, can influence wake vortex transport. The presence of nonlinear vertical shear of the crosswind velocity can reduce the descent rate, causing a wake vortex pair to tilt and change in its lateral separation. The LES parametric studies confirm that the vertical gradient of crosswind shear does influence vortex trajectories. The parametric results also show that vortex decay from the effects of shear are complex since the crosswind shear, along with the vertical gradient of crosswind shear, can affect whether the lateral separation between wake vortices is increased or decreased. If the separation is decreased, the vortex linking time is decreased, and a more rapid decay of wake vortex circulation occurs. If the separation is increased, the time to link is increased, and at least one of the vortices of the vortex pair may have a longer life time than in the case without shear. In some cases, the wake vortices may never link.
Sheared-root inocula of vesicular-arbuscular mycorrhizal fungi.
Sylvia, D M; Jarstfer, A G
1992-01-01
For efficient handling, vesicular-arbuscular mycorrhizal fungi should be processed into small and uniform inocula; however, processing can reduce the inoculum density. In this article we describe the preparation and use of sheared-root inocula of Glomus spp. in which inoculum densities were increased during processing. Our objectives were to determine inoculum viability and density after shearing and to ascertain if the sheared inocula could be pelletized or used with a gel carrier. Root samples were harvested from aeroponic cultures, blotted dry, cut into 1-cm lengths, and sheared in a food processor for up to 80 s. After shearing, the inoculum was washed over sieves, and the propagule density in each fraction was determined. Sheared inocula were also encapsulated in carrageenan or used in a gel carrier. Shearing aeroponically produced root inocula reduced particle size. Propagule density increased with decreasing size fraction down to a size of 63 mum, after which propagule density decreased. The weighted-average propagule density of the inoculum was 135,380 propagules g (dry weight) of sheared root material. Sheared roots were encapsulated successfully in carrageenan, and the gel served as an effective carrier. Aeroponic root inoculum was stored dry at 4 degrees C for 23 months without significant reduction in propagule density; however, this material was not appropriate for shearing. Moist roots, useful for shearing, began to lose propagule density after 1 month of storage. Shearing proved to be an excellent method to prepare viable root inocula of small and uniform size, allowing for more efficient and effective use of limited inoculum supplies.
Imaging Shear Strength Along Subduction Faults
Bletery, Quentin; Thomas, Amanda M.; Rempel, Alan W.; Hardebeck, Jeanne L.
2017-11-01
Subduction faults accumulate stress during long periods of time and release this stress suddenly, during earthquakes, when it reaches a threshold. This threshold, the shear strength, controls the occurrence and magnitude of earthquakes. We consider a 3-D model to derive an analytical expression for how the shear strength depends on the fault geometry, the convergence obliquity, frictional properties, and the stress field orientation. We then use estimates of these different parameters in Japan to infer the distribution of shear strength along a subduction fault. We show that the 2011 Mw9.0 Tohoku earthquake ruptured a fault portion characterized by unusually small variations in static shear strength. This observation is consistent with the hypothesis that large earthquakes preferentially rupture regions with relatively homogeneous shear strength. With increasing constraints on the different parameters at play, our approach could, in the future, help identify favorable locations for large earthquakes.
Imaging shear strength along subduction faults
Bletery, Quentin; Thomas, Amanda M.; Rempel, Alan W.; Hardebeck, Jeanne L.
2017-01-01
Subduction faults accumulate stress during long periods of time and release this stress suddenly, during earthquakes, when it reaches a threshold. This threshold, the shear strength, controls the occurrence and magnitude of earthquakes. We consider a 3-D model to derive an analytical expression for how the shear strength depends on the fault geometry, the convergence obliquity, frictional properties, and the stress field orientation. We then use estimates of these different parameters in Japan to infer the distribution of shear strength along a subduction fault. We show that the 2011 Mw9.0 Tohoku earthquake ruptured a fault portion characterized by unusually small variations in static shear strength. This observation is consistent with the hypothesis that large earthquakes preferentially rupture regions with relatively homogeneous shear strength. With increasing constraints on the different parameters at play, our approach could, in the future, help identify favorable locations for large earthquakes.
Surface waves on currents with arbitrary vertical shear
Smeltzer, Benjamin K.; Ellingsen, Simen Å.
2017-04-01
We study dispersion properties of linear surface gravity waves propagating in an arbitrary direction atop a current profile of depth-varying magnitude using a piecewise linear approximation and develop a robust numerical framework for practical calculation. The method has been much used in the past for the case of waves propagating along the same axis as the background current, and we herein extend and apply it to problems with an arbitrary angle between the wave propagation and current directions. Being valid for all wavelengths without loss of accuracy, the scheme is particularly well suited to solve problems involving a broad range of wave vectors, such as ship waves and Cauchy-Poisson initial value problems. We examine the group and phase velocities over different wavelength regimes and current profiles, highlighting characteristics due to the depth-variable vorticity. We show an example application to ship waves on an arbitrary current profile and demonstrate qualitative differences in the wake patterns between concave down and concave up profiles when compared to a constant shear profile with equal depth-averaged vorticity. We also discuss the nature of additional solutions to the dispersion relation when using the piecewise-linear model. These are vorticity waves, drifting vortical structures which are artifacts of the piecewise model. They are absent for a smooth profile and are spurious in the present context.
Linear ubiquitin chain induces apoptosis and inhibits tumor growth.
Qin, Zhoushuai; Jiang, Wandong; Wang, Guifen; Sun, Ying; Xiao, Wei
2018-01-01
Ubiquitination of proliferating cell nuclear antigen (PCNA) plays an important role in DNA damage response. Ectopic expression of PCNA fused at either terminus with ubiquitin (Ub) lacking two C-terminal glycine residues induces translesion DNA synthesis which resembles synthesis mediated by PCNA monoubiquitination. PCNA fused with Ub containing the C-terminal Gly residues at the C-terminus can be further polyubiquitinated in a Gly-dependent manner, which inhibits cell proliferation and induces ATR-dependent replication checkpoint. In this study, we surprisingly found that PCNA fused to a head-to-tail linear Ub chain induces apoptosis in a Ub chain length-dependent manner. Further investigation revealed that the apoptotic effect is actually induced by the linear Ub chain independently from PCNA, as the Ub chain fused to GFP or an epitope tag still efficiently induces apoptosis. It is revealed that the artificial linear Ub chain differs from endogenously encoded linear Ub chains in that its Ubs contain a Ub-G76S substitution, making the Ub chain resistant to cleavage by deubiquitination enzymes. We demonstrated in this study that ectopic expression of the artificial Ub chain alone in cultured human cancer cells is sufficient to inhibit tumor growth in a xenograft mouse model, making the linear Ub chain a putative anti-cancer agent.
DNA damage induced by radionuclide internal irradiation
International Nuclear Information System (INIS)
Cui Fengmei; Zhao Jingyong; Hong Chengjiao; Lao Qinhua; Wang Liuyi; Yang Shuqin
2004-01-01
Objective: To study the DNA damage of peripheral blood mononuclear cell (PBMC) in rats exposed to radionuclide internal irradiation. Methods: The radionuclides were injected into the rats and single cell get electrophoresis (SCGE) was performed to detect the length of DNA migration in the rat PBMC. Results: DNA migration in the rat PBMC increased with accumulative dose or dose-rate. It showed good relationship of dose vs. response and of dose-rate vs. response, both relationship could be described as linear models. Conclusion: Radionuclide internal irradiation could cause DNA damage in rat PBMC. (authors)
An extended sequence specificity for UV-induced DNA damage.
Chung, Long H; Murray, Vincent
2018-01-01
The sequence specificity of UV-induced DNA damage was determined with a higher precision and accuracy than previously reported. UV light induces two major damage adducts: cyclobutane pyrimidine dimers (CPDs) and pyrimidine(6-4)pyrimidone photoproducts (6-4PPs). Employing capillary electrophoresis with laser-induced fluorescence and taking advantages of the distinct properties of the CPDs and 6-4PPs, we studied the sequence specificity of UV-induced DNA damage in a purified DNA sequence using two approaches: end-labelling and a polymerase stop/linear amplification assay. A mitochondrial DNA sequence that contained a random nucleotide composition was employed as the target DNA sequence. With previous methodology, the UV sequence specificity was determined at a dinucleotide or trinucleotide level; however, in this paper, we have extended the UV sequence specificity to a hexanucleotide level. With the end-labelling technique (for 6-4PPs), the consensus sequence was found to be 5'-GCTC*AC (where C* is the breakage site); while with the linear amplification procedure, it was 5'-TCTT*AC. With end-labelling, the dinucleotide frequency of occurrence was highest for 5'-TC*, 5'-TT* and 5'-CC*; whereas it was 5'-TT* for linear amplification. The influence of neighbouring nucleotides on the degree of UV-induced DNA damage was also examined. The core sequences consisted of pyrimidine nucleotides 5'-CTC* and 5'-CTT* while an A at position "1" and C at position "2" enhanced UV-induced DNA damage. Crown Copyright © 2017. Published by Elsevier B.V. All rights reserved.
Magnetoelastic shear wave propagation in pre-stressed anisotropic media under gravity
Kumari, Nirmala; Chattopadhyay, Amares; Singh, Abhishek K.; Sahu, Sanjeev A.
2017-03-01
The present study investigates the propagation of shear wave (horizontally polarized) in two initially stressed heterogeneous anisotropic (magnetoelastic transversely isotropic) layers in the crust overlying a transversely isotropic gravitating semi-infinite medium. Heterogeneities in both the anisotropic layers are caused due to exponential variation (case-I) and linear variation (case-II) in the elastic constants with respect to the space variable pointing positively downwards. The dispersion relations have been established in closed form using Whittaker's asymptotic expansion and were found to be in the well-agreement to the classical Love wave equations. The substantial effects of magnetoelastic coupling parameters, heterogeneity parameters, horizontal compressive initial stresses, Biot's gravity parameter, and wave number on the phase velocity of shear waves have been computed and depicted by means of a graph. As a special case, dispersion equations have been deduced when the two layers and half-space are isotropic and homogeneous. The comparative study for both cases of heterogeneity of the layers has been performed and also depicted by means of graphical illustrations.
Lewis, P K; Babiker, S A
1983-01-01
Electrical stimulation decreased the shear force and increased the cooking loss in seven paired lamb Longissimus dorsi (LD) muscles. This treatment did not have any effect on the within-sample variation. Cooking in 55°, 65° and 75°C water baths for 90 min caused a linear increase in the cooking loss and shear force. There was no stimulation-cooking temperature interaction observed. Cooking temperature also had no effect on the within-sample variation. A possible explanation as to why electrical stimulation did not affect the within-sample variation is given. Copyright © 1983. Published by Elsevier Ltd.
International Nuclear Information System (INIS)
Rao, H.M.; Ghaffari, B.; Yuan, W.; Jordon, J.B.; Badarinarayan, H.
2016-01-01
The microstructure and lap-shear behaviors of friction stir linear welded wrought Al alloy AA6022-T4 to cast Mg alloy AM60B joints were examined. A process window was developed to initially identify the potential process conditions. Multitudes of welds were produced by varying the tool rotation rate and tool traverse speed. Welds produced at 1500 revolutions per minute (rpm) tool rotation rate and either 50 mm/min or 75 mm/min tool traverse speed displayed the highest quasi-static failure load of ~3.3 kN per 30 mm wide lap-shear specimens. Analysis of cross sections of untested coupons indicated that the welds made at these optimum welding parameters had negligible microvoids and displayed a favorable weld geometry for the cold lap and hook features at the faying surface, compared to welds produced using other process parameters. Cross sections of the tested coupons indicated that the dominant crack initiated on the advancing side and progressed through the weld nugget, which consists of intermetallic compounds (IMC). This study demonstrates the feasibility of welding wrought Al and cast Mg alloy via friction stir linear welding with promising lap-shear strength results.
Energy Technology Data Exchange (ETDEWEB)
Rao, H.M. [Research & Development Division, Hitachi America Ltd., Farmington Hills, MI 48335 (United States); Ghaffari, B. [Research and Advanced Engineering, Ford Motor Company, Dearborn, MI 48121 (United States); Yuan, W., E-mail: wei.yuan@hitachi-automotive.us [Research & Development Division, Hitachi America Ltd., Farmington Hills, MI 48335 (United States); Jordon, J.B. [Department of Mechanical Engineering, The University of Alabama, Tuscaloosa, AL 35487 (United States); Badarinarayan, H. [Research & Development Division, Hitachi America Ltd., Farmington Hills, MI 48335 (United States)
2016-01-10
The microstructure and lap-shear behaviors of friction stir linear welded wrought Al alloy AA6022-T4 to cast Mg alloy AM60B joints were examined. A process window was developed to initially identify the potential process conditions. Multitudes of welds were produced by varying the tool rotation rate and tool traverse speed. Welds produced at 1500 revolutions per minute (rpm) tool rotation rate and either 50 mm/min or 75 mm/min tool traverse speed displayed the highest quasi-static failure load of ~3.3 kN per 30 mm wide lap-shear specimens. Analysis of cross sections of untested coupons indicated that the welds made at these optimum welding parameters had negligible microvoids and displayed a favorable weld geometry for the cold lap and hook features at the faying surface, compared to welds produced using other process parameters. Cross sections of the tested coupons indicated that the dominant crack initiated on the advancing side and progressed through the weld nugget, which consists of intermetallic compounds (IMC). This study demonstrates the feasibility of welding wrought Al and cast Mg alloy via friction stir linear welding with promising lap-shear strength results.
Predicting Shear Transformation Events in Metallic Glasses
Xu, Bin; Falk, Michael L.; Li, J. F.; Kong, L. T.
2018-03-01
Shear transformation is the elementary process for plastic deformation of metallic glasses, the prediction of the occurrence of the shear transformation events is therefore of vital importance to understand the mechanical behavior of metallic glasses. In this Letter, from the view of the potential energy landscape, we find that the protocol-dependent behavior of shear transformation is governed by the stress gradient along its minimum energy path and we propose a framework as well as an atomistic approach to predict the triggering strains, locations, and structural transformations of the shear transformation events under different shear protocols in metallic glasses. Verification with a model Cu64 Zr36 metallic glass reveals that the prediction agrees well with athermal quasistatic shear simulations. The proposed framework is believed to provide an important tool for developing a quantitative understanding of the deformation processes that control mechanical behavior of metallic glasses.
Thrombus Formation at High Shear Rates.
Casa, Lauren D C; Ku, David N
2017-06-21
The final common pathway in myocardial infarction and ischemic stroke is occlusion of blood flow from a thrombus forming under high shear rates in arteries. A high-shear thrombus forms rapidly and is distinct from the slow formation of coagulation that occurs in stagnant blood. Thrombosis at high shear rates depends primarily on the long protein von Willebrand factor (vWF) and platelets, with hemodynamics playing an important role in each stage of thrombus formation, including vWF binding, platelet adhesion, platelet activation, and rapid thrombus growth. The prediction of high-shear thrombosis is a major area of biofluid mechanics in which point-of-care testing and computational modeling are promising future directions for clinically relevant research. Further research in this area will enable identification of patients at high risk for arterial thrombosis, improve prevention and treatment based on shear-dependent biological mechanisms, and improve blood-contacting device design to reduce thrombosis risk.
Modeling of shear wall buildings
Energy Technology Data Exchange (ETDEWEB)
Gupta, A K [North Carolina State Univ., Raleigh (USA). Dept. of Civil Engineering
1984-05-01
Many nuclear power plant buildings, for example, the auxiliary building, have reinforced concrete shear walls as the primary lateral load resisting system. Typically, these walls have low height to length ratio, often less than unity. Such walls exhibit marked shear lag phenomenon which would affect their bending stiffness and the overall stress distribution in the building. The deformation and the stress distribution in walls have been studied which is applicable to both the short and the tall buildings. The behavior of the wall is divided into two parts: the symmetric flange action and the antisymmetry web action. The latter has two parts: the web shear and the web bending. Appropriate stiffness equations have been derived for all the three actions. These actions can be synthesized to solve any nonlinear cross-section. Two specific problems, that of lateral and torsional loadings of a rectangular box, have been studied. It is found that in short buildings shear lag plays a very important role. Any beam type formulation which either ignores shear lag or includes it in an idealized form is likely to lead to erroneous results. On the other hand a rigidity type approach with some modifications to the standard procedures would yield nearly accurate answers.
Shear instability of a gyroid diblock copolymer
DEFF Research Database (Denmark)
Eskimergen, Rüya; Mortensen, Kell; Vigild, Martin Etchells
2005-01-01
-induced destabilization is discussed in relation to analogous observations on shear-induced order-to-order and disorder-to-order transitions observed in related block copolymer systems and in microemulsions. It is discussed whether these phenomena originate in shear-reduced fluctuations or shear-induced dislocations....
Gonzales, Joaquin U; Thistlethwaite, John R; Thompson, Benjamin C; Scheuermann, Barry W
2009-07-01
Shear stress is the frictional force of blood against the endothelium, a stimulus for endothelial activation and the release of von Willebrand factor (vWF). This study tested the hypothesis that the increase in shear stress associated with exercise correlates with plasma vWF. Young (n = 14, 25.7 +/- 5.4 years) and older (n = 13, 65.6 +/- 10.7 years) individuals participated in 30 min of dynamic handgrip exercise at a moderate intensity. Brachial artery diameter and blood flow were measured using ultrasound Doppler and blood samples were collected before, immediately after, and following 30 min of recovery from exercise with plasma levels of vWF. Plasma levels of vWF increased (P exercise. The change in plasma vWF was linearly correlated with the increase in shear stress during exercise in older individuals (post-exercise: r = 0.78, 30 min recovery: r = 0.77, P < 0.01), but no association was found in the young individuals. These changes in plasma levels of vWF in humans suggest that aging influences endothelial activation and hemostasis.
International Nuclear Information System (INIS)
Chialvo, A.A.; Debenedetti, P.G.
1991-01-01
To date, the calculation of shear viscosity for soft-core fluids via equilibrium molecular dynamics has been done almost exclusively using the Green-Kubo formalism. The alternative mean-squared displacement approach has not been used, except for hard-sphere fluids, in which case the expression proposed by Helfand [Phys. Rev. 119, 1 (1960)] has invariably been selected. When written in the form given by McQuarrie [Statistical Mechanics (Harper ampersand Row, New York, 1976), Chap. 21], however, the mean-squared displacement approach offers significant computational advantages over both its Green-Kubo and Helfand counterparts. In order to achieve comparable statistical significance, the number of experiments needed when using the Green-Kubo or Helfand formalisms is more than an order of magnitude higher than for the McQuarrie expression. For pairwise-additive systems with zero linear momentum, the McQuarrie method yields frame-independent shear viscosities. The hitherto unexplored McQuarrie implementation of the mean-squared displacement approach to shear-viscosity calculation thus appears superior to alternative methods currently in use
Energy Technology Data Exchange (ETDEWEB)
Geisert, M; Heicke, B; Metzmann, E; Zahn, R K
1975-04-01
Using a radioimmunoassay (RIA) based on the Farr technique with radioactively labeled /sup 3/H-DNA for quantitative measurements of anti-DNA antibodies in sera of patients with systemic lupus erythematosus (SLE), the influence of molecular weight of DNA (ranging from 0.1 x 10/sup 6/ to 22.0 x 10/sup 6/ daltons) on binding and precipitation in this system has been investigated. Comparing our results with mathematical models it follows that one antibody molecule is fixed on the average to a statistical DNA segment of 2 x 10/sup 6/ to 4 x 10/sup 6/ daltons. Furthermore binding capacity of the DNA was found to be independent of the molecular weight, as demonstrated in a double label experiment using /sup 14/C and /sup 3/H-labeled DNA of different size. However, the amount of radioactivity precipitated was found to depend on the molecular weight of the labeled DNA following a non-linear function. It was calculated that a minimal ratio of fixed antibody molecules per a certain size of DNA was necessary for precipitation. The mathematical treatment of the observed non-linear precipitation dependence will be discussed using various statistical models. The results indicate that the quantitative measurements of anti-DNA antibodies with the Farr technique e.g., for diagnosis and control of SLE in clinical immunology is highly dependent on the molecular weight of the labeled DNA used in the assay system and reliable results are only obtained with DNA of a sufficiently high molecular weight. (auth)
A Theoretical and Experimental Study of DNA Self-assembly
Chandran, Harish
The control of matter and phenomena at the nanoscale is fast becoming one of the most important challenges of the 21st century with wide-ranging applications from energy and health care to computing and material science. Conventional top-down approaches to nanotechnology, having served us well for long, are reaching their inherent limitations. Meanwhile, bottom-up methods such as self-assembly are emerging as viable alternatives for nanoscale fabrication and manipulation. A particularly successful bottom up technique is DNA self-assembly where a set of carefully designed DNA strands form a nanoscale object as a consequence of specific, local interactions among the different components, without external direction. The final product of the self-assembly process might be a static nanostructure or a dynamic nanodevice that performs a specific function. Over the past two decades, DNA self-assembly has produced stunning nanoscale objects such as 2D and 3D lattices, polyhedra and addressable arbitrary shaped substrates, and a myriad of nanoscale devices such as molecular tweezers, computational circuits, biosensors and molecular assembly lines. In this dissertation we study multiple problems in the theory, simulations and experiments of DNA self-assembly. We extend the Turing-universal mathematical framework of self-assembly known as the Tile Assembly Model by incorporating randomization during the assembly process. This allows us to reduce the tile complexity of linear assemblies. We develop multiple techniques to build linear assemblies of expected length N using far fewer tile types than previously possible. We abstract the fundamental properties of DNA and develop a biochemical system, which we call meta-DNA, based entirely on strands of DNA as the only component molecule. We further develop various enzyme-free protocols to manipulate meta-DNA systems and provide strand level details along with abstract notations for these mechanisms. We simulate DNA circuits by
Shear wave velocity structure of northern and North-Eastern Ethiopia
International Nuclear Information System (INIS)
Kebede, F.; Mammo, T.; Panza, G.F.; Vuan, A.; Costa, G.
1995-10-01
The non-linear inversion technique known as hedgehog is utilized to define the average crustal structure of North and North-Eastern Ethiopia. To accomplish the task a two dimensional frequency-time analysis is performed to obtain Rayleigh wave group velocity dispersion curves. Six earthquakes recorded by the broad-band digital seismograph installed at the Geophysical Observatory of Addis Ababa University are utilized. The crustal structure between the Gulf of Tadjura (western Gulf of Aden) and Addis Ababa crossing southern Afar (path I) can be approximated by a total thickness of about 22 km with average S-wave velocity in the range 2.3 - 3.9 km/s. The crust-mantle transition is poorly developed at greater depths and the shear wave velocity ranges from 4.0 km/s to 4.3 km/s. If the effect of the plateau part is taken into account the average total crustal thickness is found to be less than 18 km and the average S-wave velocity varies in the range 2.4 - 3.9 km/s. The low shear wave velocity under the Afar crust is consistent with the result of other geophysical studies. For path II, which passes through the border of the Western Ethiopian plateau, the average crustal structure is found to be approximated by a thickness of about 40 km and average S-wave velocity between 3.0 km/s and 3.9 km/s. The crust overlies a lithospheric mantle with a shear wave velocity in the range 4.1-4.4 km/s. (author). 37 refs, 11 figs, 4 tabs
Shear localization and effective wall friction in a wall bounded granular flow
Artoni, Riccardo; Richard, Patrick
2017-06-01
In this work, granular flow rheology is investigated by means of discrete numerical simulations of a torsional, cylindrical shear cell. Firstly, we focus on azimuthal velocity profiles and study the effect of (i) the confining pressure, (ii) the particle-wall friction coefficient, (iii) the rotating velocity of the bottom wall and (iv) the cell diameter. For small cell diameters, azimuthal velocity profiles are nearly auto-similar, i.e. they are almost linear with the radial coordinate. Different strain localization regimes are observed : shear can be localized at the bottom, at the top of the shear cell, or it can be even quite distributed. This behavior originates from the competition between dissipation at the sidewalls and dissipation in the bulk of the system. Then we study the effective friction at the cylindrical wall, and point out the strong link between wall friction, slip and fluctuations of forces and velocities. Even if the system is globally below the sliding threshold, force fluctuations trigger slip events, leading to a nonzero wall slip velocity and an effective wall friction coefficient different from the particle-wall one. A scaling law was found linking slip velocity, granular temperature in the main flow direction and effective friction. Our results suggest that fluctuations are an important ingredient for theories aiming to capture the interface rheology of granular materials.
LEDGF/p75 Deficiency Increases Deletions at the HIV-1 cDNA Ends.
Bueno, Murilo T D; Reyes, Daniel; Llano, Manuel
2017-09-15
Processing of unintegrated linear HIV-1 cDNA by the host DNA repair system results in its degradation and/or circularization. As a consequence, deficient viral cDNA integration generally leads to an increase in the levels of HIV-1 cDNA circles containing one or two long terminal repeats (LTRs). Intriguingly, impaired HIV-1 integration in LEDGF/p75-deficient cells does not result in a correspondent increase in viral cDNA circles. We postulate that increased degradation of unintegrated linear viral cDNA in cells lacking the lens epithelium-derived growth factor (LEDGF/p75) account for this inconsistency. To evaluate this hypothesis, we characterized the nucleotide sequence spanning 2-LTR junctions isolated from LEDGF/p75-deficient and control cells. LEDGF/p75 deficiency resulted in a significant increase in the frequency of 2-LTRs harboring large deletions. Of note, these deletions were dependent on the 3' processing activity of integrase and were not originated by aberrant reverse transcription. Our findings suggest a novel role of LEDGF/p75 in protecting the unintegrated 3' processed linear HIV-1 cDNA from exonucleolytic degradation.
Accurate shear measurement with faint sources
International Nuclear Information System (INIS)
Zhang, Jun; Foucaud, Sebastien; Luo, Wentao
2015-01-01
For cosmic shear to become an accurate cosmological probe, systematic errors in the shear measurement method must be unambiguously identified and corrected for. Previous work of this series has demonstrated that cosmic shears can be measured accurately in Fourier space in the presence of background noise and finite pixel size, without assumptions on the morphologies of galaxy and PSF. The remaining major source of error is source Poisson noise, due to the finiteness of source photon number. This problem is particularly important for faint galaxies in space-based weak lensing measurements, and for ground-based images of short exposure times. In this work, we propose a simple and rigorous way of removing the shear bias from the source Poisson noise. Our noise treatment can be generalized for images made of multiple exposures through MultiDrizzle. This is demonstrated with the SDSS and COSMOS/ACS data. With a large ensemble of mock galaxy images of unrestricted morphologies, we show that our shear measurement method can achieve sub-percent level accuracy even for images of signal-to-noise ratio less than 5 in general, making it the most promising technique for cosmic shear measurement in the ongoing and upcoming large scale galaxy surveys
Energy spectrum of tearing mode turbulence in sheared background field
Hu, Di; Bhattacharjee, Amitava; Huang, Yi-Min
2018-06-01
The energy spectrum of tearing mode turbulence in a sheared background magnetic field is studied in this work. We consider the scenario where the nonlinear interaction of overlapping large-scale modes excites a broad spectrum of small-scale modes, generating tearing mode turbulence. The spectrum of such turbulence is of interest since it is relevant to the small-scale back-reaction on the large-scale field. The turbulence we discuss here differs from traditional MHD turbulence mainly in two aspects. One is the existence of many linearly stable small-scale modes which cause an effective damping during the energy cascade. The other is the scale-independent anisotropy induced by the large-scale modes tilting the sheared background field, as opposed to the scale-dependent anisotropy frequently encountered in traditional critically balanced turbulence theories. Due to these two differences, the energy spectrum deviates from a simple power law and takes the form of a power law multiplied by an exponential falloff. Numerical simulations are carried out using visco-resistive MHD equations to verify our theoretical predictions, and a reasonable agreement is found between the numerical results and our model.
Shear and loading in channels: Oscillatory shearing and edge currents of superconducting vortices
Wambaugh, J. F.; Marchesoni, F.; Nori, Franco
2003-04-01
Via computer simulations we study the motion of quantized magnetic flux-lines, or vortices, confined to a straight pin-free channel in a strong-pinning superconducting sample. We find that, when a constant current is applied across this system, a very unusual oscillatory shearing appears, in which the vortices moving at the edges of the channel periodically trail behind and then suddenly leapfrog past the vortices moving in the inner rows. For small enough driving forces, this oscillatory shearing dynamic phase is replaced by a continuous shearing phase in which the distance between initially-nearby vortices grows in time, quickly destroying the order of the lattice. An animation of this novel “oscillatory leapfrogging shear” effect of the vortex edge currents appears in http://www-personal.engin.umich.edu/˜nori/channel/
Benchmark study of shear buckling of a cylindrical vessel. Part 2
International Nuclear Information System (INIS)
Combescure, A.; Bastien, R.; Carnoy, E.G.; Dostal, M.; Austin, N.M.; Peano, A.; Angeloni, P.
1988-01-01
In Liquid Metal Fast Breeder Reactors (LMFBR) potential shear buckling failures of the primary vessel, induced through seismic excitations, have to be considered. The primary vessel material, typically 316 stainless steel, has a low yield strength at the normal operating temperatures of around 400 0 C to 500 0 C. There characteristics tend to make the structure relatively flexible and subject to potential elasto-plastic shear buckling failure. The use of finite element techniques in buckling analyses is currently becoming more accepted. There are at present many finite element codes available which have the capacibility to solve buckling problems. The objective of the study reported herein was to follow on from the previous code validation exercise and investigate the ability of finite element codes to predict buckling behaviour in another test cylinder [a/h = 83, a/L = 1] where non-linear effects would be more significant and plastic shear buckling could be a failure mode. As before four organisations took part in the code validation exercise. NNC [UK] and ISMES [Italy] used the commercially available general purpose FE code ABAQUS. CEA [France] used INCA and BILBO which are members of the commercially available CASTEM suite of FE program. Novatome [France] used their in-house FE code NOVNL. The joint effort was co-ordinated by NNC with the assistance of the Commission of the European Communities Working on Codes and Standards AG2
Vesicle dynamics in shear and capillary flows
International Nuclear Information System (INIS)
Noguchi, Hiroshi; Gompper, Gerhard
2005-01-01
The deformation of vesicles in flow is studied by a mesoscopic simulation technique, which combines multi-particle collision dynamics for the solvent with a dynamically triangulated surface model for the membrane. Shape transitions are investigated both in simple shear flows and in cylindrical capillary flows. We focus on reduced volumes, where the discocyte shape of fluid vesicles is stable, and the prolate shape is metastable. In simple shear flow at low membrane viscosity, the shear induces a transformation from discocyte to prolate with increasing shear rate, while at high membrane viscosity, the shear induces a transformation from prolate to discocyte, or tumbling motion accompanied by oscillations between these two morphologies. In capillary flow, at small flow velocities the symmetry axis of the discocyte is found not to be oriented perpendicular to the cylinder axis. With increasing flow velocity, a transition to a prolate shape occurs for fluid vesicles, while vesicles with shear-elastic membranes (like red blood cells) transform into a coaxial parachute-like shape
International Nuclear Information System (INIS)
Biver, E.; Sims, J.
1997-01-01
This paper, originally presented at the WM'96 Conference in Tucson Arizona, describes a concept of a specialised decommissioning tool designed to operate underwater and to reduce the volume of radioactive components by shearing and compacting. The shear compactor was originally conceived to manage the size reduction of a variety of decommissioned stainless steel tubes stored within a reactor fuel cooling pond and which were consuming a substantial volume of the pond. The main objective of this tool was to cut the long tubes into shorter lengths and to compact them into a flat rectangular form which could be stacked on the pond floor, thus saving valuable space. The development programme, undertaken on this project, investigated a wide range of factors which could contribute to an extended cutting blade performance, ie: materials of construction, cutting blade shape and cutting loads required, shock effects, etc. The second phase was to review other aspects of the design, such as radiological protection, cutting blade replacement, maintenance, pond installation and resultant wall loads, water hydraulics, collection of products of shearing/compacting operations, corrosion of the equipment, control system, operational safety and the ability of the equipment to operate in dry environments. The paper summarises the extended work programme involved with this shear compactor tool. (author)
Evolution of allowable stresses in shear for lumber
Robert L. Ethington; William L. Galligan; Henry M. Montrey; Alan D. Freas
1979-01-01
This paper surveys research leading to allowable shear stress parallel to grain for lumber. In early flexure tests of lumber, some pieces failed in shear. The estimated shear stress at time of failure was generally lower than shear strength measured on small, clear, straight-grained specimens. This and other engineering observations gave rise to adjustments that...
Experimental and Numerical Analyses of New Massive Wooden Shear-Wall Systems
Directory of Open Access Journals (Sweden)
Luca Pozza
2014-07-01
Full Text Available Three innovative massive wooden shear-wall systems (Cross-Laminated-Glued Wall, Cross-Laminated-Stapled Wall, Layered Wall with dovetail inserts were tested and their structural behaviour under seismic action was assessed with numerical simulations. The wall specimens differ mainly in the method used to assemble the layers of timber boards composing them. Quasi-static cyclic loading tests were carried out and then reproduced with a non-linear numerical model calibrated on the test results to estimate the most appropriate behaviour factor for each system. Non-linear dynamic simulations of 15 artificially generated seismic shocks showed that these systems have good dissipative capacity when correctly designed and that they can be assigned to the medium ductility class of Eurocode 8. This work also shows the influence of deformations in wooden panels and base connectors on the behaviour factor and dissipative capacity of the system.
General stability of memory-type thermoelastic Timoshenko beam acting on shear force
Apalara, Tijani A.
2018-03-01
In this paper, we consider a linear thermoelastic Timoshenko system with memory effects where the thermoelastic coupling is acting on shear force under Neumann-Dirichlet-Dirichlet boundary conditions. The same system with fully Dirichlet boundary conditions was considered by Messaoudi and Fareh (Nonlinear Anal TMA 74(18):6895-6906, 2011, Acta Math Sci 33(1):23-40, 2013), but they obtained a general stability result which depends on the speeds of wave propagation. In our case, we obtained a general stability result irrespective of the wave speeds of the system.
Linear study of Kelvin-Helmholtz instability for a viscous compressible fluid
International Nuclear Information System (INIS)
Hallo, L.; Gauthier, S.
1992-01-01
The linear phase of the process leading to a developed turbulence is particularly important for the study of flow stability. A Galerkin spectral method adapted to the study of the mixture layer of one fluid is proposed from a sheared initial velocity profile. An algebraic mapping is developed to improve accuracy near high gradient zone. Validation is obtained by analytic methods for non-viscous flow and multi-domain spectral methods for viscous and compressible flow. Rates of growth are presented for subsonic and slightly supersonic flow. An extension of the method is presented for the study of the linear stability of a mixture with variable concentration and transport properties
Shear zones between rock units with no relative movement
DEFF Research Database (Denmark)
Koyi, Hemin; Schmeling, Harro; Burchardt, Steffi
2013-01-01
Shear zones are normally viewed as relatively narrow deformation zones that accommodate relative displacement between two "blocks" that have moved past each other in opposite directions. This study reports localized zones of shear between adjacent blocks that have not moved past each other. Such ...... given credit for and may be responsible for some reverse kinematics reported in shear zones....... or wakes, elongated bodies (vertical plates or horizontal rod-like bodies) produce tabular shear zones or wakes. Unlike conventional shear zones across which shear indicators usually display consistent symmetries, shear indicators on either side of the shear zone or wake reported here show reverse...... kinematics. Thus profiles exhibit shear zones with opposed senses of movement across their center-lines or -planes.We have used field observations and results from analytical and numerical models to suggest that examples of wakes are the transit paths that develop where denser blocks sink within salt...
Effect of shear span-to-depth ratio on the shear behavior of BFRP-RC deep beams
Directory of Open Access Journals (Sweden)
Alhamad Siyam
2017-01-01
Full Text Available This study investigates the shear behavior of deep concrete beams reinforced with basalt fiber reinforced polymer (BFRP bars for flexure without web reinforcements. The experimental testing performed herein consisted of a total of 4 short beams, three of which were reinforced with BFRP and one beam was reinforced with steel bars. The primary test variable was the shear-span-to-effective-depth ratio (a/d and its influence on the beams’ mid-span deflections, shear capacity, load-deformation relationships and the failure modes.
Evaluation of composite shear walls behavior (parametric study
Directory of Open Access Journals (Sweden)
Ali Nikkhoo
2017-11-01
Full Text Available Composite shear walls which are made of a layer of steel plate with a concrete cover in one or both sides of the steel plate, are counted as the third generation of the shear walls. Nowadays, composite shear walls are widely utilized in building new resisting structures as well as rehabilitating of the existing structures in earthquake-prone countries. Despite of its advantages, use of the composite shear walls is not yet prevalent as it demands more detailed appropriate investigation. Serving higher strength, flexibility and better energy absorption, while being more economical are the main advantages of this system which has paved its path to be used in high-rise buildings, structural retrofit and reservoir tanks. In this research, channel shear connectors are utilized to connect the concrete cover to the steel plate. As a key parameter, variation in the distance of shear connectors and their arrangement on the behavior of composite shear walls has been scrutinized. In addition, the shear stiffness, flexibility, out of plane displacement and the energy absorption of the structural system has been explored. For this purpose, several structural models with different shear distances and arrangements have been investigated. The obtained results reveal that with increase in shear connectors’ distance, the wall stiffness would reduce while its lateral displacement increases up to eighty percent While the out of plane displacement of the steel plate will reduce up to three times.
Torsional shear flow of granular materials: shear localization and minimum energy principle
Artoni, Riccardo; Richard, Patrick
2018-01-01
The rheological properties of granular matter submitted to torsional shear are investigated numerically by means of discrete element method. The shear cell is made of a cylinder filled by grains which are sheared by a bumpy bottom and submitted to a vertical pressure which is applied at the top. Regimes differing by their strain localization features are observed. They originate from the competition between dissipation at the sidewalls and dissipation in the bulk of the system. The effects of the (i) the applied pressure, (ii) sidewall friction, and (iii) angular velocity are investigated. A model, based on the purely local μ (I)-rheology and a minimum energy principle is able to capture the effect of the two former quantities but unable to account the effect of the latter. Although, an ad hoc modification of the model allows to reproduce all the numerical results, our results point out the need for an alternative rheology.
Lee, Jounghun; Choi, Yun-Young
2015-02-01
We report a detection of the effect of the large-scale velocity shear on the spatial distributions of the galactic satellites around the isolated hosts. Identifying the isolated galactic systems, each of which consists of a single host galaxy and its satellites, from the Seventh Data Release of the Sloan Digital Sky Survey and reconstructing linearly the velocity shear field in the local universe, we measure the alignments between the relative positions of the satellites from their isolated hosts and the principal axes of the local velocity shear tensors projected onto the plane of sky. We find a clear signal that the galactic satellites in isolated systems are located preferentially along the directions of the minor principal axes of the large-scale velocity shear field. Those galactic satellites that are spirals, are brighter, are located at distances larger than the projected virial radii of the hosts, and belong to the spiral hosts yield stronger alignment signals, which implies that the alignment strength depends on the formation and accretion epochs of the galactic satellites. It is also shown that the alignment strength is quite insensitive to the cosmic web environment, as well as the size and luminosity of the isolated hosts. Although this result is consistent with the numerical finding of Libeskind et al. based on an N-body experiment, owing to the very low significance of the observed signals, it remains inconclusive whether or not the velocity shear effect on the satellite distribution is truly universal.
International Nuclear Information System (INIS)
Lee, Jounghun; Choi, Yun-Young
2015-01-01
We report a detection of the effect of the large-scale velocity shear on the spatial distributions of the galactic satellites around the isolated hosts. Identifying the isolated galactic systems, each of which consists of a single host galaxy and its satellites, from the Seventh Data Release of the Sloan Digital Sky Survey and reconstructing linearly the velocity shear field in the local universe, we measure the alignments between the relative positions of the satellites from their isolated hosts and the principal axes of the local velocity shear tensors projected onto the plane of sky. We find a clear signal that the galactic satellites in isolated systems are located preferentially along the directions of the minor principal axes of the large-scale velocity shear field. Those galactic satellites that are spirals, are brighter, are located at distances larger than the projected virial radii of the hosts, and belong to the spiral hosts yield stronger alignment signals, which implies that the alignment strength depends on the formation and accretion epochs of the galactic satellites. It is also shown that the alignment strength is quite insensitive to the cosmic web environment, as well as the size and luminosity of the isolated hosts. Although this result is consistent with the numerical finding of Libeskind et al. based on an N-body experiment, owing to the very low significance of the observed signals, it remains inconclusive whether or not the velocity shear effect on the satellite distribution is truly universal
Failure modes of low-rise shear walls
International Nuclear Information System (INIS)
Farrar, C.R.; Reed, J.W.; Salmon, M.W.
1993-01-01
A summary of available data concerning the structural response of low-rise shear walls is presented. These data will be used to address two failure modes associated with shear wall structures. First, the data concerning the seismic capacity of the shear walls are examined, with emphasis on excessive deformations that can cause equipment failure. Second, the data concerning the dynamic properties of shear walls (stiffness and damping) that are necessary for computing the seismic inputs to attached equipment are summarized. This case addresses the failure of equipment when the structure remains functional
Determination of wall shear stress from mean velocity and Reynolds shear stress profiles
Volino, Ralph J.; Schultz, Michael P.
2018-03-01
An analytical method is presented for determining the Reynolds shear stress profile in steady, two-dimensional wall-bounded flows using the mean streamwise velocity. The method is then utilized with experimental data to determine the local wall shear stress. The procedure is applicable to flows on smooth and rough surfaces with arbitrary pressure gradients. It is based on the streamwise component of the boundary layer momentum equation, which is transformed into inner coordinates. The method requires velocity profiles from at least two streamwise locations, but the formulation of the momentum equation reduces the dependence on streamwise gradients. The method is verified through application to laminar flow solutions and turbulent DNS results from both zero and nonzero pressure gradient boundary layers. With strong favorable pressure gradients, the method is shown to be accurate for finding the wall shear stress in cases where the Clauser fit technique loses accuracy. The method is then applied to experimental data from the literature from zero pressure gradient studies on smooth and rough walls, and favorable and adverse pressure gradient cases on smooth walls. Data from very near the wall are not required for determination of the wall shear stress. Wall friction velocities obtained using the present method agree with those determined in the original studies, typically to within 2%.
Adiabatic shear localization in ultrafine grained 6061 aluminum alloy
Energy Technology Data Exchange (ETDEWEB)
Wang, Bingfeng, E-mail: biw009@ucsd.edu [School of Materials Science and Engineering, Central South University, Changsha 410083 (China); Department of Mechanical and Aerospace Engineering, University of California, San Diego (United States); State Key Laboratory for Powder Metallurgy, Central South University, Changsha, Hunan (China); Key Lab of Nonferrous Materials, Ministry of Education, Central South University, Changsha 410083 (China); Ma, Rui; Zhou, Jindian [School of Materials Science and Engineering, Central South University, Changsha 410083 (China); Li, Zezhou; Zhao, Shiteng [Department of Mechanical and Aerospace Engineering, University of California, San Diego (United States); Huang, Xiaoxia [School of Materials Science and Engineering, Central South University, Changsha 410083 (China)
2016-10-15
Localized shear is an important mode of deformation; it leads to catastrophic failure with low ductility, and occurs frequently during high strain-rate deformation. The hat-shaped specimen has been successfully used to generate shear bands under controlled shock-loading tests. The microstructure in the forced shear band was characterized by optical microscopy, microhardness, and transmission electron microscopy. The true flow stress in the shear region can reach 800 MPa where the strain is about 2.2. The whole shear localization process lasts for about 100 μs. The shear band is a long and straight band distinguished from the matrix by boundaries. It can be seen that the grains in the boundary of the shear band are highly elongated along the shear direction and form the elongated cell structures (0.2 µm in width), and the core of the shear band consists of a number of recrystallized equiaxed grains with 0.2−0.3 µm in diameters, and the second phase particles distribute in the boundary of the ultrafine equiaxed new grains. The calculated temperature in the shear band can reach about 667 K. Finally, the formation of the shear band in the ultrafine grained 6061 aluminum alloy and its microstructural evolution are proposed.
Generation and Radiation of Acoustic Waves from a 2-D Shear Layer using the CE/SE Method
Loh, Ching Y.; Wang, Xiao Y.; Chang, Sin-Chung; Jorgenson, Philip C. E.
2000-01-01
In the present work, the generation and radiation of acoustic waves from a 2-D shear layer problem is considered. An acoustic source inside of a 2-D jet excites an instability wave in the shear layer, resulting in sound Mach radiation. The numerical solution is obtained by solving the Euler equations using the space time conservation element and solution element (CE/SE) method. Linearization is achieved through choosing a small acoustic source amplitude. The Euler equations are nondimensionalized as instructed in the problem statement. All other conditions are the same except that the Crocco's relation has a slightly different form. In the following, after a brief sketch of the CE/SE method, the numerical results for this problem are presented.
Evolution of thermal ion transport barriers in reversed shear/ optimised shear plasmas
International Nuclear Information System (INIS)
Voitsekhovitch, I.; Garbet, X.; Moreau, D.; Bush, C.E.; Budny, R.V.; Gohil, P.; Kinsey, J.E.; Talyor, T.S.; Litaudon, X.
2001-01-01
The effects of the magnetic and ExB rotation shears on the thermal ion transport in advanced tokamak scenarios are analyzed through the predictive modelling of the evolution of internal transport barriers. Such a modelling is performed with an experimentally validated L-mode thermal diffusivity completed with a semi-empirical shear correction which is based on simple theoretical arguments from turbulence studies. A multi-machine test of the model on relevant discharges from the ITER Data Base (TFTR, DIII-D and JET) is presented. (author)
Resolution of axial shear strain elastography
International Nuclear Information System (INIS)
Thitaikumar, Arun; Righetti, Raffaella; Krouskop, Thomas A; Ophir, Jonathan
2006-01-01
The technique of mapping the local axial component of the shear strain due to quasi-static axial compression is defined as axial shear strain elastography. In this paper, the spatial resolution of axial shear strain elastography is investigated through simulations, using an elastically stiff cylindrical lesion embedded in a homogeneously softer background. Resolution was defined as the smallest size of the inclusion for which the strain value at the inclusion/background interface was greater than the average of the axial shear strain values at the interface and inside the inclusion. The resolution was measured from the axial shear strain profile oriented at 45 0 to the axis of beam propagation, due to the absence of axial shear strain along the normal directions. The effects of the ultrasound system parameters such as bandwidth, beamwidth and transducer element pitch along with signal processing parameters such as correlation window length (W) and axial shift (ΔW) on the estimated resolution were investigated. The results show that the resolution (at 45 0 orientation) is determined by the bandwidth and the beamwidth. However, the upper bound on the resolution is limited by the larger of the beamwidth and the window length, which is scaled inversely to the bandwidth. The results also show that the resolution is proportional to the pitch and not significantly affected by the axial window shift
Confinement properties of tokamak plasmas with extended regions of low magnetic shear
Graves, J. P.; Cooper, W. A.; Kleiner, A.; Raghunathan, M.; Neto, E.; Nicolas, T.; Lanthaler, S.; Patten, H.; Pfefferle, D.; Brunetti, D.; Lutjens, H.
2017-10-01
Extended regions of low magnetic shear can be advantageous to tokamak plasmas. But the core and edge can be susceptible to non-resonant ideal fluctuations due to the weakened restoring force associated with magnetic field line bending. This contribution shows how saturated non-linear phenomenology, such as 1 / 1 Long Lived Modes, and Edge Harmonic Oscillations associated with QH-modes, can be modelled accurately using the non-linear stability code XTOR, the free boundary 3D equilibrium code VMEC, and non-linear analytic theory. That the equilibrium approach is valid is particularly valuable because it enables advanced particle confinement studies to be undertaken in the ordinarily difficult environment of strongly 3D magnetic fields. The VENUS-LEVIS code exploits the Fourier description of the VMEC equilibrium fields, such that full Lorenzian and guiding centre approximated differential operators in curvilinear angular coordinates can be evaluated analytically. Consequently, the confinement properties of minority ions such as energetic particles and high Z impurities can be calculated accurately over slowing down timescales in experimentally relevant 3D plasmas.
Interfacial shear behavior of composite flanged concrete beams
Directory of Open Access Journals (Sweden)
Moataz Awry Mahmoud
2014-08-01
Full Text Available Composite concrete decks are commonly used in the construction of highway bridges due to their rapid constructability. The interfacial shear transfer between the top slab and the supporting beams is of great significance to the overall deck load carrying capacity and performance. Interfacial shear capacity is directly influenced by the distribution and the percentage of shear connectors. Research and design guidelines suggest the use of two different approaches to quantify the required interfacial shear strength, namely based on the maximum compressive forces in the flange at mid span or the maximum shear flow at the supports. This paper investigates the performance of flanged reinforced concrete composite beams with different shear connector’s distribution and reinforcing ratios. The study incorporated both experimental and analytical programs for beams. Key experimental findings suggest that concentrating the connectors at the vicinity of the supports enhances the ductility of the beam. The paper proposes a simple and straight forward approach to estimate the interfacial shear capacity that was proven to give good correlation with the experimental results and selected code provisions. The paper presents a method to predict the horizontal shear force between precast beams and cast in-situ slabs.
An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Directory of Open Access Journals (Sweden)
Ke Shi
Full Text Available Hairpin telomeres of bacterial linear chromosomes are generated by a DNA cutting-rejoining enzyme protelomerase. Protelomerase resolves a concatenated dimer of chromosomes as the last step of chromosome replication, converting a palindromic DNA sequence at the junctions between chromosomes into covalently closed hairpins. The mechanism by which protelomerase transforms a duplex DNA substrate into the hairpin telomeres remains largely unknown. We report here a series of crystal structures of the protelomerase TelA bound to DNA that represent distinct stages along the reaction pathway. The structures suggest that TelA converts a linear duplex substrate into hairpin turns via a transient strand-refolding intermediate that involves DNA-base flipping and wobble base-pairs. The extremely compact di-nucleotide hairpin structure of the product is fully stabilized by TelA prior to strand ligation, which drives the reaction to completion. The enzyme-catalyzed, multistep strand refolding is a novel mechanism in DNA rearrangement reactions.
Accurate quantification of supercoiled DNA by digital PCR
Dong, Lianhua; Yoo, Hee-Bong; Wang, Jing; Park, Sang-Ryoul
2016-01-01
Digital PCR (dPCR) as an enumeration-based quantification method is capable of quantifying the DNA copy number without the help of standards. However, it can generate false results when the PCR conditions are not optimized. A recent international comparison (CCQM P154) showed that most laboratories significantly underestimated the concentration of supercoiled plasmid DNA by dPCR. Mostly, supercoiled DNAs are linearized before dPCR to avoid such underestimations. The present study was conducted to overcome this problem. In the bilateral comparison, the National Institute of Metrology, China (NIM) optimized and applied dPCR for supercoiled DNA determination, whereas Korea Research Institute of Standards and Science (KRISS) prepared the unknown samples and quantified them by flow cytometry. In this study, several factors like selection of the PCR master mix, the fluorescent label, and the position of the primers were evaluated for quantifying supercoiled DNA by dPCR. This work confirmed that a 16S PCR master mix avoided poor amplification of the supercoiled DNA, whereas HEX labels on dPCR probe resulted in robust amplification curves. Optimizing the dPCR assay based on these two observations resulted in accurate quantification of supercoiled DNA without preanalytical linearization. This result was validated in close agreement (101~113%) with the result from flow cytometry. PMID:27063649
Shear wave elastography with a new reliability indicator
Directory of Open Access Journals (Sweden)
Christoph F. Dietrich
2016-09-01
Full Text Available Non-invasive methods for liver stiffness assessment have been introduced over recent years. Of these, two main methods for estimating liver fibrosis using ultrasound elastography have become established in clinical practice: shear wave elastography and quasi-static or strain elastography. Shear waves are waves with a motion perpendicular (lateral to the direction of the generating force. Shear waves travel relatively slowly (between 1 and 10 m/s. The stiffness of the liver tissue can be assessed based on shear wave velocity (the stiffness increases with the speed. The European Federation of Societies for Ultrasound in Medicine and Biology has published Guidelines and Recommendations that describe these technologies and provide recommendations for their clinical use. Most of the data available to date has been published using the Fibroscan (Echosens, France, point shear wave speed measurement using an acoustic radiation force impulse (Siemens, Germany and 2D shear wave elastography using the Aixplorer (SuperSonic Imagine, France. More recently, also other manufacturers have introduced shear wave elastography technology into the market. A comparison of data obtained using different techniques for shear wave propagation and velocity measurement is of key interest for future studies, recommendations and guidelines. Here, we present a recently introduced shear wave elastography technology from Hitachi and discuss its reproducibility and comparability to the already established technologies.
Shear wave elastography with a new reliability indicator.
Dietrich, Christoph F; Dong, Yi
2016-09-01
Non-invasive methods for liver stiffness assessment have been introduced over recent years. Of these, two main methods for estimating liver fibrosis using ultrasound elastography have become established in clinical practice: shear wave elastography and quasi-static or strain elastography. Shear waves are waves with a motion perpendicular (lateral) to the direction of the generating force. Shear waves travel relatively slowly (between 1 and 10 m/s). The stiffness of the liver tissue can be assessed based on shear wave velocity (the stiffness increases with the speed). The European Federation of Societies for Ultrasound in Medicine and Biology has published Guidelines and Recommendations that describe these technologies and provide recommendations for their clinical use. Most of the data available to date has been published using the Fibroscan (Echosens, France), point shear wave speed measurement using an acoustic radiation force impulse (Siemens, Germany) and 2D shear wave elastography using the Aixplorer (SuperSonic Imagine, France). More recently, also other manufacturers have introduced shear wave elastography technology into the market. A comparison of data obtained using different techniques for shear wave propagation and velocity measurement is of key interest for future studies, recommendations and guidelines. Here, we present a recently introduced shear wave elastography technology from Hitachi and discuss its reproducibility and comparability to the already established technologies.
Collective behaviour of linear perturbation waves observed through the energy density spectrum
Energy Technology Data Exchange (ETDEWEB)
Scarsoglio, S [Department of Water Engineering, Politecnico di Torino (Italy); De Santi, F; Tordella, D, E-mail: stefania.scarsoglio@polito.it [Department of Aeronautics and Space Engineering, Politecnico di Torino (Italy)
2011-12-22
We consider the collective behaviour of small three-dimensional transient perturbations in sheared flows. In particular, we observe their varied life history through the temporal evolution of the amplification factor. The spectrum of wave vectors considered fills the range from the size of the external flow scale to the size of the very short dissipative waves. We observe that the amplification factor distribution is scale-invariant. In the condition we analyze, the system is subject to all the physical processes included in the linearized Navier-Stokes equations. With the exception of the nonlinear interaction, these features are the same as those characterizing the turbulent state. The linearized perturbative system offers a great variety of different transient behaviours associated to the parameter combination present in the initial conditions. For the energy spectrum computed by freezing each wave at the instant where its asymptotic condition is met, we ask whether this system is able to show a power-law scaling analogous to the Kolmogorov argument. At the moment, for at least two typical shear flows, the bluff-body wake and the plane Poiseuille flow, the answer is yes.
Hydrodynamical fluctuations in smooth shear flows
International Nuclear Information System (INIS)
Chagelishvili, G.D.; Khujadze, G.R.; Lominadze, J.G.
1999-11-01
Background of hydrodynamical fluctuations in a intrinsically/stochastically forced, laminar, uniform shear flow is studied. The employment of so-called nonmodal mathematical analysis makes it possible to represent the background of fluctuations in a new light and to get more insight into the physics of its formation. The basic physical processes responsible for the formation of vortex and acoustic wave fluctuation backgrounds are analyzed. Interplay of the processes at low and moderate shear rates is described. Three-dimensional vortex fluctuations around a given macroscopic state are numerically calculated. The correlation functions of the fluctuations of physical quantities are analyzed. It is shown that there exists subspace D k in the wave-number space (k-space) that is limited externally by spherical surface with radius k ν ≡ A/ν (where A is the velocity shear parameter, ν - the kinematic viscosity) in the nonequilibrium open system under study. The spatial Fourier harmonics of vortex as well as acoustic wave fluctuations are strongly subjected by flow shear (by the open character of the system) at wave-numbers satisfying the condition k ν . Specifically it is shown that in D k : The fluctuations are non-Markovian; the spatial spectral density of energy of the vortex fluctuations by far exceeds the white-noise; the term of a new type associated to the hydrodynamical fluctuation of velocity appears in the correlation function of pressure; the fluctuation background of the acoustic waves is completely different at low and moderate shear rates (at low shear rates it is reduced in D k in comparison to the uniform (non-shear) flow; at moderate shear rates it it comparable to the background of the vortex fluctuations). The fluctuation background of both the vortex and the acoustic wave modes is anisotropic. The possible significance of the fluctuation background of vortices for the subcritical transition to turbulence and Brownian motion of small macroscopic
Simulation of shear thickening in attractive colloidal suspensions.
Pednekar, Sidhant; Chun, Jaehun; Morris, Jeffrey F
2017-03-01
The influence of attractive forces between particles under conditions of large particle volume fraction, ϕ, is addressed using numerical simulations which account for hydrodynamic, Brownian, conservative and frictional contact forces. The focus is on conditions for which a significant increase in the apparent viscosity at small shear rates, and possibly the development of a yield stress, is observed. The high shear rate behavior for Brownian suspensions has been shown in recent work [R. Mari, R. Seto, J. F. Morris and M. M. Denn PNAS, 2015, 112, 15326-15330] to be captured by the inclusion of pairwise forces of two forms, one a contact frictional interaction and the second a repulsive force often found in stabilized colloidal dispersions. Under such conditions, shear thickening is observed when shear stress is comparable to the sum of the Brownian stress, kT/a 3 , and a characteristic stress based on the combination of interparticle force, i.e. σ ∼ F 0 /a 2 with kT the thermal energy, F 0 the repulsive force scale and a the particle radius. At sufficiently large ϕ, this shear thickening can be very abrupt. Here it is shown that when attractive interactions are present with the noted forces, the shear thickening is obscured, as the viscosity shear thins with increasing shear rate, eventually descending from an infinite value (yield stress conditions) to a plateau at large stress; this plateau is at the same level as the large-shear rate viscosity found in the shear thickened state without attractive forces. It is shown that this behavior is consistent with prior observations in shear thickening suspensions modified to be attractive through depletion flocculation [V. Gopalakrishnan and C. F. Zukoski J. Rheol., 2004, 48, 1321-1344]. The contributions of the contact, attractive, and hydrodynamics forces to the bulk stress are presented, as are the contact networks found at different attractive strengths.
Shear zones between rock units with no relative movement
DEFF Research Database (Denmark)
Koyi, H.; Schmeling, H.; Burchardt, S.
2012-01-01
, elongated bodies (vertical plates or horizontal rod-like bodies) produce tabular shear zones. Unlike conventional shear zones across which shear indicators ideally display consistent symmetries, shear indicators on either sides of the shear zone reported here show reverse kinematics. Thus profiles exhibit...... by progressive extension and (perhaps) where slabs of subducted oceanic lithosphere delaminate from the continental crust and sink into the asthenosphere. We also argue that such shear zones may be more common than they have been given the credit for and may be responsible for some of the kinematic reversals...
Song, Pengfei; Macdonald, Michael C.; Behler, Russell H.; Lanning, Justin D.; Wang, Michael H.; Urban, Matthew W.; Manduca, Armando; Zhao, Heng; Callstrom, Matthew R.; Alizad, Azra; Greenleaf, James F.; Chen, Shigao
2014-01-01
Two-dimensional (2D) shear wave elastography presents 2D quantitative shear elasticity maps of tissue, which are clinically useful for both focal lesion detection and diffuse disease diagnosis. Realization of 2D shear wave elastography on conventional ultrasound scanners, however, is challenging due to the low tracking pulse-repetition-frequency (PRF) of these systems. While some clinical and research platforms support software beamforming and plane wave imaging with high PRF, the majority of current clinical ultrasound systems do not have the software beamforming capability, which presents a critical challenge for translating the 2D shear wave elastography technique from laboratory to clinical scanners. To address this challenge, this paper presents a Time Aligned Sequential Tracking (TAST) method for shear wave tracking on conventional ultrasound scanners. TAST takes advantage of the parallel beamforming capability of conventional systems and realizes high PRF shear wave tracking by sequentially firing tracking vectors and aligning shear wave data in the temporal direction. The Comb-push Ultrasound Shear Elastography (CUSE) technique was used to simultaneously produce multiple shear wave sources within the field-of-view (FOV) to enhance shear wave signal-to-noise-ratio (SNR) and facilitate robust reconstructions of 2D elasticity maps. TAST and CUSE were realized on a conventional ultrasound scanner (the General Electric LOGIQ E9). A phantom study showed that the shear wave speed measurements from the LOGIQ E9 were in good agreement to the values measured from other 2D shear wave imaging technologies. An inclusion phantom study showed that the LOGIQ E9 had comparable performance to the Aixplorer (Supersonic Imagine) in terms of bias and precision in measuring different sized inclusions. Finally, in vivo case analysis of a breast with a malignant mass, and a liver from a healthy subject demonstrated the feasibility of using the LOGIQ E9 for in vivo 2D shear wave
Shear-induced phase changes in mixtures
International Nuclear Information System (INIS)
Romig, K.D.; Hanley, H.J.M.
1986-01-01
A thermodynamic theory to account for the behavior of liquid mixtures exposed to a shear is developed. One consequence of the theory is that shear-induced phase changes are predicted. The theory is based on a thermodynamics that includes specifically the shear rate in the formalism and is applied to mixtures by a straightforward modification of the corresponding states, conformalsolution approach. The approach is general but is used here for a mixture of Lennard-Jones particles with a Lennard-Jones equation of state as a reference fluid. The results are discussed in the context of the Scott and Van Konynenberg phase classification. It is shown that the influence of a shear does affect substantially the type of the phase behavior. Results from the model mixture are equated loosely with those from real polymeric liquids
Effect of short-chain branching on interfacial polymer structure and dynamics under shear flow.
Jeong, Sohdam; Kim, Jun Mo; Cho, Soowon; Baig, Chunggi
2017-11-22
We present a detailed analysis on the effect of short-chain branches on the structure and dynamics of interfacial chains using atomistic nonequilibrium molecular dynamics simulations of confined polyethylene melts in a wide range of shear rates. The intrinsically fast random motions of the short branches constantly disturb the overall chain conformation, leading to a more compact and less deformed chain structure of the short-chain branched (SCB) polymer against the imposed flow field in comparison with the corresponding linear polymer. Moreover, such highly mobile short branches along the backbone of the SCB polymer lead to relatively weaker out-of-plane wagging dynamics of interfacial chains, with highly curvy backbone structures in the intermediate flow regime. In conjunction with the contribution of short branches (as opposed to that of the backbone) to the total interfacial friction between the chains and the wall, the SCB polymer shows a nearly constant behavior in the degree of slip (d s ) with respect to shear rate in the weak-to-intermediate flow regimes. On the contrary, in the strong flow regime where irregular chain rotation and tumbling dynamics occur via intensive dynamical collisions between interfacial chains and the wall, an enhancement effect on the chain detachment from the wall, caused by short branches, leads to a steeper increase in d s for the SCB polymer than for the linear polymer. Remarkably, the SCB chains at the interface exhibit two distinct types of rolling mechanisms along the backbone, with a half-dumbbell mesoscopic structure at strong flow fields, in addition to the typical hairpin-like tumbling behavior displayed by the linear chains.
Results of shear studies with 241-AY-101 sludge
International Nuclear Information System (INIS)
WARRANT, R.W.
2001-01-01
The Department of Energy's Tanks Focus Area (TFA) authorized a project to study the effect of shear on the settling properties of high-level waste sludge to support retrieval programs. A series of settling studies was conducted on a composite sample of tank 241-AY-101 (AY-101) material. Comparisons were made with duplicate samples that were sheared with a tissue homogenizer and allowed to settle. Aliquots of sheared and unsheared settled solids were submitted for chemical and radiological analyses. There are five major conclusions from the study that apply to AY-101 sludge: (1) Sludge settling rates are detectably decreased after shearing of particles by means of a tissue homogenizer. A significant decrease in the settling rates was measured after 2 minutes of shearing. A smaller additional decrease in the settling rates was observed after an additional 10 minutes of shearing. (2) Sodium and Cesium appear to be present in both the liquid and solid phases of the composite sample. (3) The shearing of the solids does not appear to significantly change the distribution of the radionuclides, ( 241 Am, 90 Sr, Total Alpha, or other radionuclides), within the solids. (4) The mean particle diameter decreases after shearing with the tissue homogenizer and affects the settling rate in proportion to the square of the particle diameter. (5) The sonication of the unsheared particles produces a similar particle size reduction to that of shearing with a tissue homogenizer. It is difficult to quantitatively compare the shear produced by a mixer pump installed in a double-shell tank with that produced by the tissue homogenizer in the laboratory. On a qualitative basis, the mixing pump would be expected to have less mechanical and more hydraulic shearing effect than the tissue homogenizer. Since the particle size distribution studies indicate that (for the AY-101 solids) the breaking up of particle aggregates is the main means of particle size reduction, then the hydraulic shearing
Construction of Infectious cDNA Clone of a Chrysanthemum stunt viroid Korean Isolate
Directory of Open Access Journals (Sweden)
Ju-Yeon Yoon
2014-03-01
Full Text Available Chrysanthemum stunt viroid (CSVd, a noncoding infectious RNA molecule, causes seriously economic losses of chrysanthemum for 3 or 4 years after its first infection. Monomeric cDNA clones of CSVd isolate SK1 (CSVd-SK1 were constructed in the plasmids pGEM-T easy vector and pUC19 vector. Linear positive-sense transcripts synthesized in vitro from the full-length monomeric cDNA clones of CSVd-SK1 could infect systemically tomato seedlings and chrysanthemum plants, suggesting that the linear CSVd RNA transcribed from the cDNA clones could be replicated as efficiently as circular CSVd in host species. However, direct inoculation of plasmid cDNA clones containing full-length monomeric cDNA of CSVd-SK1 failed to infect tomato and chrysanthemum and linear negative-sense transcripts from the plasmid DNAs were not infectious in the two plant species. The cDNA sequences of progeny viroid in systemically infected tomato and chrysanthemum showed a few substitutions at a specific nucleotide position, but there were no deletions and insertions in the sequences of the CSVd progeny from tomato and chrysanthemum plants.
Toroidal effects on the non-linearly saturated m = 1 island in tokamaks
International Nuclear Information System (INIS)
Avinash, K.; Haas, F.A.; Thyagaraja, A.
1990-01-01
This paper investigates the influence of toroidal effects (due to the coupling of various poloidal harmonics) on the non-linear saturation of the m=1 island. Bounds are obtained relating the aspect ratio, the shear at the q=1 surface and the saturated island width. Provided these bounds are satisfied, then we find that the cylindrical m=1 island theory is valid for toroidal geometry. (author)
International Nuclear Information System (INIS)
Ballarini, F.; Rossetti, M.; Scannicchio, D.; Jacob, P.; Molinelli, S.; Ottolenghi, A.; Volata, A.
2003-01-01
Radiation-induced DNA damage can be modulated by various factors, including the environment scavenging capacity (SC) and the DNA organization within the cell nucleus (chromatin compactness, DNA-binding proteins etc.). In this context the induction of ssb and dsb by photons and light ions of different energies impinging on different DNA structures (e.g. linear DNA, SV40 'minichromosomes' and cellular DNA) at different OH-radical SC values was modelled with the Monte Carlo PARTRAC code. Presently PARTRAC can transport electrons, photons, protons and alpha particles in liquid water with an 'event-by-event' approach, and can simulate the DNA content of mammalian cells with an 'atom-by-atom' description, from nucleotide pairs to chromatin fibre loops and chromosome territories. Energy depositions in the sugar-phosphate were considered as potential (direct) ssb. The production, diffusion and reaction of chemical species were explicitly simulated; reactions of OH radicals with the sugar-phosphate were assumed to lead to 'indirect' ssb with probability 65%. Two ssb on opposite strands within 10 bp were considered as a dsb. Yields of ssb and dsb/Gy/Dalton were calculated for different DNA structures as a function of the OH mean life time. By Zyuzikov, N.; Michael, B.D. (Gray Cancer Institute, (GB)); Wu, L. (Ch Zyuzdirect damage yields. In general, also depending on radiation quality, linear DNA was found to be more susceptible to strand breakage than SV40 minichromosomes, which in turn showed higher damage yields with respect to cellular DNA. The very good agreement found with available experimental data provided a validation of the model and allowed us to quantify separately the protective effect of OH scavengers and DNA/chromatin organization. Comparisons with data on nucleoids (DNA unfolded and depleted of histones) suggested that the experimental procedures used to obtain such targets might lower the environment SC, due to the loss of cellular scavenging compounds
Strain gradient drives shear banding in metallic glasses
Tian, Zhi-Li; Wang, Yun-Jiang; Chen, Yan; Dai, Lan-Hong
2017-09-01
Shear banding is a nucleation-controlled process in metallic glasses (MGs) involving multiple temporal-spatial scales, which hinders a concrete understanding of its structural origin down to the atomic scale. Here, inspired by the morphology of composite materials, we propose a different perspective of MGs as a hard particle-reinforced material based on atomic-scale structural heterogeneity. The local stable structures indicated by a high level of local fivefold symmetry (L5FS) act as hard "particles" which are embedded in the relatively soft matrix. We demonstrate this concept by performing atomistic simulations of shear banding in CuZr MG. A shear band is prone to form in a sample with a high degree of L5FS which is slowly quenched from the liquid. An atomic-scale analysis on strain and the structural evolution reveals that it is the strain gradient effect that has originated from structural heterogeneity that facilitates shear transformation zones (STZs) to mature shear bands. An artificial composite model with a high degree of strain gradient, generated by inserting hard MG strips into a soft MG matrix, demonstrates a great propensity for shear banding. It therefore confirms the critical role strain gradient plays in shear banding. The strain gradient effect on shear banding is further quantified with a continuum model and a mechanical instability analysis. These physical insights might highlight the strain gradient as the hidden driving force in transforming STZs into shear bands in MGs.
Coniglio, Michael Charles
Common large-scale environments associated with the development of derecho-producing convective systems from a large number of events are identified using statistical clustering of the 500-mb geopotential heights as guidance. The majority of the events (72%) fall into three main patterns that include a well-defined upstream trough (40%), a ridge (20%), and a zonal, low-amplitude flow (12%), which is defined as an additional warm-season pattern that is not identified in past studies of derecho environments. Through an analysis of proximity soundings, discrepancies are found in both low-level and deep-tropospheric shear parameters between observations and the shear profiles considered favorable for strong, long-lived convective systems in idealized simulations. To explore the role of upper-level shear in derecho environments, a set of two-dimensional simulations of density currents within a dry, neutrally stable environment are used to examine the ability of a cold pool to lift environmental air within a vertically sheared flow. The results confirm that the addition of upper-level shear to a wind profile with weak to moderate low-level shear increases the vertical displacement of low-level parcels despite a decrease in the vertical velocity along the cold pool interface, as suggested by previous studies. Parcels that are elevated above the surface (1-2 km) overturn and are responsible for the deep lifting in the deep-shear environments. This deep overturning caused by the upper-level shear helps to maintain the tilt of the convective systems in more complex two-dimensional and three dimensional simulations. The overturning also is shown to greatly increase the size of the convective systems in the three-dimensional simulations by facilitating the initiation and maintenance of convective cells along the cold pool. When combined with estimates of the cold pool motion and the storm-relative hodograph, these results may best be used for the prediction of the demise of
Nonlinear interaction of Rayleigh--Taylor and shear instabilities
International Nuclear Information System (INIS)
Finn, J.M.
1993-01-01
Results on the nonlinear behavior of the Rayleigh--Taylor instability and consequent development of shear flow by the shear instability [Phys. Fluids B 4, 488 (1992)] are presented. It is found that the shear flow is generated at sufficient amplitude to reduce greatly the convective transport. For high viscosity, the time-asymptotic state consists of an equilibrium with shear flow and vortex flow (with islands, or ''cat's eyes''), or a relaxation oscillation involving an interplay between the shear instability and the Rayleigh--Taylor instability in the presence of shear. For low viscosity, the dominant feature is a high-frequency nonlinear standing wave consisting of convective vortices localized near the top and bottom boundaries. The localization of these vortices is due to the smaller shear near the boundary regions. The convective transport is largest around these convective vortices near the boundary and there is a region of good confinement near the center. The possible relevance of this behavior to the H mode and edge-localized modes (ELM's) in the tokamak edge region is discussed
Directory of Open Access Journals (Sweden)
G. M. Behery
2009-01-01
Full Text Available This paper presents an automatic system of neural networks (NNs that has the ability to simulate and predict many of applied problems. The system architectures are automatically reorganized and the experimental process starts again, if the required performance is not reached. This processing is continued until the performance obtained. This system is first applied and tested on the two spiral problem; it shows that excellent generalization performance obtained by classifying all points of the two-spirals correctly. After that, it is applied and tested on the shear stress and the pressure drop problem across the short orifice die as a function of shear rate at different mean pressures for linear low-density polyethylene copolymer (LLDPE at 190∘C. The system shows a better agreement with an experimental data of the two cases: shear stress and pressure drop. The proposed system has been also designed to simulate other distributions not presented in the training set (predicted and matched them effectively.
Edge Sheared Flows and Blob Dynamics
Energy Technology Data Exchange (ETDEWEB)
Myra, J.; D' Ippolito, D.; Russell, D., E-mail: jrmyra@lodestar.com [Lodestar Research Corporation, Boulder (United States); Davis, W. M.; Zweben, S. [Princeton Plasma Physics Laboratory, Princeton (United States); Terry, J.; LaBombard, B. [Massachusetts Institute of Technology, Cambridge (United States)
2012-09-15
Full text: A study of sheared flows in the edge and scrape-off layer (SOL) and their interaction with blob-filaments is presented. Edge sheared flows are believed to be important for the L-H, and H-L transitions. Blob generation and dynamics impacts both the (near-separatrix) scrape-off-layer (SOL) width critical for power handling in the divertor, and the interaction of plasma in the far SOL with plasma-facing components. These topics are critical for ITER and future devices. A fluid-based 2D curvature-interchange model embedded in the SOLT code is employed to study these issues. Sheared binormal flows both regulate the power flux crossing the separatrix and control the character of emitted turbulence structures such as blob-filaments. At a critical power level (depending on parameters) the laminar flows containing intermittent, but bound, structures give way to full-blown blob emissions signifying a transition from quasi-diffusive to convective transport. In order to diagnose sheared flows in experiments and assess their interaction with blobs, a blob-tracking algorithm has been developed and applied to both NSTX and Alcator C-Mod data. Blob motion and ellipticity can be affected by sheared flows, and are diagnosed and compared with seeded blob simulations. A picture of the interaction of blobs and sheared flows is emerging from advances in the theory and simulation of edge turbulence, combined with ever-improving capabilities for edge diagnostics and their analysis. (author)
Evaluation of shear mounted elastomeric damper
Zorzi, E.; Walton, J.
1982-01-01
Viton-70 elastomeric shear mounted damper was built and tested on a T-55 power turbine spool in the rotor's high speed balancing rig. This application of a shear mounted elastomeric damper demonstrated for the first time, the feasibility of using elastomers as the primary rotor damping source in production turbine engine hardware. The shear damper design was selected because it was compatible with actual gas turbine engine radial space constraints, could accommodate both the radial and axial thrust loads present in gas turbine engines, and was capable of controlled axial preload. The shear damper was interchangeable with the production T-55 power turbine roller bearing support so that a direct comparison between the shear damper and the production support structure could be made. Test results show that the Viton-70 elastomer damper operated successfully and provided excellent control of both synchronous and nonsynchronous vibrations through all phases of testing up to the maximum rotor speed of 16,000 rpm. Excellent correlation between the predicted and experienced critical speeds, mode shapes and log decrements for the power turbine rotor and elastomer damper assembly was also achieved.
Spectral and evolutionary analysis of advection-diffusion equations and the shear flow paradigm
International Nuclear Information System (INIS)
Thyagaraja, A.; Loureiro, N.; Knight, P.J.
2002-01-01
Advection-diffusion equations occur in a wide variety of fields in many contexts of active and passive transport in fluids and plasmas. The effects of sheared advective flows in the presence of irreversible processes such as diffusion and viscosity are of considerable current interest in tokamak and astrophysical contexts, where they are thought to play a key role in both transport and the dynamical structures characteristic of electromagnetic plasma turbulence. In this paper we investigate the spectral and evolutionary properties of relatively simple, linear, advection-diffusion equations. We apply analytical approaches based on standard Green's function methods to obtain insight into the nature of the spectra when the advective and diffusive effects occur separately and in combination. In particular, the physically interesting limit of small (but finite) diffusion is studied in detail. The analytical work is extended and supplemented by numerical techniques involving a direct solution of the eigenvalue problem as well as evolutionary studies of the initial value problem using a parallel code, CADENCE. The three approaches are complementary and entirely consistent with each other when appropriate comparison is made. They reveal different aspects of the properties of the advection-diffusion equation, such as the ability of sheared flows to generate a direct cascade to high wave numbers transverse to the advection and the consequent enhancement of even small amounts of diffusivity. The invariance properties of the spectra in the low diffusivity limit and the ability of highly sheared, jet-like flows to 'confine' transport to low shear regions are demonstrated. The implications of these properties in a wider context are discussed and set in perspective. (author)
DEFF Research Database (Denmark)
Lazarov, Boyan Stefanov; Ditlevsen, Ove
2005-01-01
The object of study is a stationary Gaussian white noise excited plane multistory shear frame with a large number of rigid traverses. All the traverse-connecting columns have finite symmetrical yield limits except the columns in one or more of the bottom floors. The columns behave linearly elastic...... within the yield limits and ideally plastic outside these without accumulating eigenstresses. Within the elastic domain the frame is modeled as a linearly damped oscillator. The white noise excitation acts on the mass of the first floor making the movement of the elastic bottom floors simulate a ground...
Characterization of Human Dental Pulp Tissue Under Oscillatory Shear and Compression.
Ozcan, Burak; Bayrak, Ece; Erisken, Cevat
2016-06-01
Availability of material as well as biological properties of native tissues is critical for biomaterial design and synthesis for regenerative engineering. Until recently, selection of biomaterials and biomolecule carriers for dental pulp regeneration has been done randomly or based on experience mainly due to the absence of benchmark data for dental pulp tissue. This study, for the first time, characterizes the linear viscoelastic material functions and compressive properties of human dental pulp tissue harvested from wisdom teeth, under oscillatory shear and compression. The results revealed a gel-like behavior of the pulp tissue over the frequency range of 0.1-100 rps. Uniaxial compression tests generated peak normal stress and compressive modulus values of 39.1 ± 20.4 kPa and 5.5 ± 2.8 kPa, respectively. Taken collectively, the linear viscoelastic and uniaxial compressive properties of the human dental pulp tissue reported here should enable the better tailoring of biomaterials or biomolecule carriers to be employed in dental pulp regeneration.
Shear induced structures in crystallizing cocoa butter
Mazzanti, Gianfranco; Guthrie, Sarah E.; Sirota, Eric B.; Marangoni, Alejandro G.; Idziak, Stefan H. J.
2004-03-01
Cocoa butter is the main structural component of chocolate and many cosmetics. It crystallizes in several polymorphs, called phases I to VI. We used Synchrotron X-ray diffraction to study the effect of shear on its crystallization. A previously unreported phase (phase X) was found and a crystallization path through phase IV under shear was observed. Samples were crystallized under shear from the melt in temperature controlled Couette cells, at final crystallization temperatures of 17.5^oC, 20^oC and 22.5^oC in Beamline X10A of NSLS. The formation of phase X was observed at low shear rates (90 s-1) and low crystallization temperature (17.5^oC), but was absent at high shear (720 s-1) and high temperature (20^oC). The d-spacing and melting point suggest that this new phase is a mixture rich on two of the three major components of cocoa butter. We also found that, contrary to previous reports, the transition from phase II to phase V can happen through the intermediate phase IV, at high shear rates and temperature.
Experimental study on the adiabatic shear bands
International Nuclear Information System (INIS)
Affouard, J.
1984-07-01
Four martensitic steels (Z50CDV5 steel, 28CND8 steel, 35NCDV16 steel and 4340 steel) with different hardness between 190 and 600 Hsub(B) (Brinell hardness), have been studied by means of dynamic compressive tests on split Hopkinson pressure bar. Microscopic observations show that the fracture are associated to the development of adiabatic shear bands (except 4340 steel with 190 Hsub(B) hardness). By means of tests for which the deformation is stopped at predetermined levels, the measurement of shear and hardness inside the band and the matrix indicates the chronology of this phenomenon: first the localization of shear, followed by the formation of adiabatic shear band and ultimatly crack initiation and propagation. These results correlated with few simulations by finite elements have permitted to suggest two mecanisms of deformation leading to the formation of adiabatic shear bands in this specific test [fr
Shear-induced inflation of coronal magnetic fields
International Nuclear Information System (INIS)
Klimchuk, J.A.
1990-01-01
Using numerical models of force-free magnetic fields, the shearing of footprints in arcade geometries leading to an inflation of the coronal magnetic field was examined. For each of the shear profiles considered, all of the field lines become elevated compared with the potential field. This includes cases where the shear is concentrated well away from the arcade axis, such that B(sub z), the component of field parallel to the axis, increases outward to produce an inward B(sub z) squared/8 pi magnetic pressure gradient force. These results contrast with an earlier claim, shown to be incorrect, that field lines can sometimes become depressed as a result of shear. It is conjectured that an inflation of the entire field will always result from the shearing of simple arcade configurations. These results have implications for prominence formation, the interplanetary magnetic flux, and possibly also coronal holes. 38 refs
Zhang, Yun; Liu, Xiaomei; Zhang, Jinju; Zhang, Chun
2016-09-01
To develop a site-specific integration strategy for CAR-T engineering by using a non-viral vector dependent on adeno-associated viral (AAV) genome, which tends to be integrated into AAVS1 site with the help of its Rep proteins. AAV-dependent vectors were produced in Sf9 cells. Structural analyses revealed the vector as covalently close-ended, linear duplex molecules, which was termed "CELiD" DNA. A plasmid CMV-Rep was constructed to express the integrases Rep78 and Rep68. Jurkat cells were co-electroporated with "CELiD" DNA and plasmid CMV-Rep in order to specifically integrate CAR gene into AAVS1 site. We examined 71 stably transfected Jurkat clones by nested PCR, sequencing and southern blotting, of which 30 clones bore CAR gene within AAVS1 site. The site-specific integration efficiency was nearly 42.2 %. The AAV-dependent vector preferentially integrated CAR into AAVS1 site, which could be further used in human T cell modification and enhance the security of CAR-T therapy.
A 3D spectral anelastic hydrodynamic code for shearing, stratified flows
Barranco, Joseph A.; Marcus, Philip S.
2006-11-01
We have developed a three-dimensional (3D) spectral hydrodynamic code to study vortex dynamics in rotating, shearing, stratified systems (e.g., the atmosphere of gas giant planets, protoplanetary disks around newly forming protostars). The time-independent background state is stably stratified in the vertical direction and has a unidirectional linear shear flow aligned with one horizontal axis. Superposed on this background state is an unsteady, subsonic flow that is evolved with the Euler equations subject to the anelastic approximation to filter acoustic phenomena. A Fourier Fourier basis in a set of quasi-Lagrangian coordinates that advect with the background shear is used for spectral expansions in the two horizontal directions. For the vertical direction, two different sets of basis functions have been implemented: (1) Chebyshev polynomials on a truncated, finite domain, and (2) rational Chebyshev functions on an infinite domain. Use of this latter set is equivalent to transforming the infinite domain to a finite one with a cotangent mapping, and using cosine and sine expansions in the mapped coordinate. The nonlinear advection terms are time-integrated explicitly, the pressure/enthalpy terms are integrated semi-implicitly, and the Coriolis force and buoyancy terms are treated semi-analytically. We show that internal gravity waves can be damped by adding new terms to the Euler equations. The code exhibits excellent parallel performance with the message passing interface (MPI). As a demonstration of the code, we simulate the merger of two 3D vortices in the midplane of a protoplanetary disk.
Mamatsashvili, G; Khujadze, G; Chagelishvili, G; Dong, S; Jiménez, J; Foysi, H
2016-08-01
To understand the mechanism of the self-sustenance of subcritical turbulence in spectrally stable (constant) shear flows, we performed direct numerical simulations of homogeneous shear turbulence for different aspect ratios of the flow domain with subsequent analysis of the dynamical processes in spectral or Fourier space. There are no exponentially growing modes in such flows and the turbulence is energetically supported only by the linear growth of Fourier harmonics of perturbations due to the shear flow non-normality. This non-normality-induced growth, also known as nonmodal growth, is anisotropic in spectral space, which, in turn, leads to anisotropy of nonlinear processes in this space. As a result, a transverse (angular) redistribution of harmonics in Fourier space is the main nonlinear process in these flows, rather than direct or inverse cascades. We refer to this type of nonlinear redistribution as the nonlinear transverse cascade. It is demonstrated that the turbulence is sustained by a subtle interplay between the linear nonmodal growth and the nonlinear transverse cascade. This course of events reliably exemplifies a well-known bypass scenario of subcritical turbulence in spectrally stable shear flows. These two basic processes mainly operate at large length scales, comparable to the domain size. Therefore, this central, small wave number area of Fourier space is crucial in the self-sustenance; we defined its size and labeled it as the vital area of turbulence. Outside the vital area, the nonmodal growth and the transverse cascade are of secondary importance: Fourier harmonics are transferred to dissipative scales by the nonlinear direct cascade. Although the cascades and the self-sustaining process of turbulence are qualitatively the same at different aspect ratios, the number of harmonics actively participating in this process (i.e., the harmonics whose energies grow more than 10% of the maximum spectral energy at least once during evolution) varies
Mamatsashvili, G.; Khujadze, G.; Chagelishvili, G.; Dong, S.; Jiménez, J.; Foysi, H.
2016-08-01
To understand the mechanism of the self-sustenance of subcritical turbulence in spectrally stable (constant) shear flows, we performed direct numerical simulations of homogeneous shear turbulence for different aspect ratios of the flow domain with subsequent analysis of the dynamical processes in spectral or Fourier space. There are no exponentially growing modes in such flows and the turbulence is energetically supported only by the linear growth of Fourier harmonics of perturbations due to the shear flow non-normality. This non-normality-induced growth, also known as nonmodal growth, is anisotropic in spectral space, which, in turn, leads to anisotropy of nonlinear processes in this space. As a result, a transverse (angular) redistribution of harmonics in Fourier space is the main nonlinear process in these flows, rather than direct or inverse cascades. We refer to this type of nonlinear redistribution as the nonlinear transverse cascade. It is demonstrated that the turbulence is sustained by a subtle interplay between the linear nonmodal growth and the nonlinear transverse cascade. This course of events reliably exemplifies a well-known bypass scenario of subcritical turbulence in spectrally stable shear flows. These two basic processes mainly operate at large length scales, comparable to the domain size. Therefore, this central, small wave number area of Fourier space is crucial in the self-sustenance; we defined its size and labeled it as the vital area of turbulence. Outside the vital area, the nonmodal growth and the transverse cascade are of secondary importance: Fourier harmonics are transferred to dissipative scales by the nonlinear direct cascade. Although the cascades and the self-sustaining process of turbulence are qualitatively the same at different aspect ratios, the number of harmonics actively participating in this process (i.e., the harmonics whose energies grow more than 10% of the maximum spectral energy at least once during evolution) varies
Calculation model of non-linear dynamic deformation of composite multiphase rods
Directory of Open Access Journals (Sweden)
Mishchenko Andrey Viktorovich
2014-05-01
Full Text Available The method of formulating non-linear physical equations for multiphase rods is suggested in the article. Composite multiphase rods possess various structures, include shear, polar, radial and axial inhomogeneity. The Timoshenko’s hypothesis with the large rotation angles is used. The method is based on the approximation of longitudinal normal stress low by basic functions expansions regarding the linear viscosity low. The shear stresses are calculated with the equilibrium equation using the subsidiary function of the longitudinal shift force. The system of differential equations connecting the internal forces and temperature with abstract deformations are offered by the basic functions. The application of power functions with arbitrary index allows presenting the compact form equations. The functional coefficients in this system are the highest order rigidity characteristics. The whole multiphase cross-section rigidity characteristics are offered the sums of the rigidity characteristics of the same phases individually. The obtained system allows formulating the well-known particular cases. Among them: hard plasticity and linear elastic deformation, different module deformation and quadratic Gerstner’s low elastic deformation. The reform of differential equations system to the quasilinear is suggested. This system contains the secant variable rigidity characteristics depending on abstract deformations. This system includes the sum of the same uniform blocks of different order. The rods phases defined the various set of uniform blocks phase materials. The integration of dynamic, kinematic and physical equations taking into account initial and edge condition defines the full dynamical multiphase rods problem. The quasilinear physical equations allow getting the variable flexibility matrix of multiphase rod and rods system.
Directory of Open Access Journals (Sweden)
John H. Cantrell
2015-03-01
Full Text Available The chemical treatment of carbon fibers used in carbon fiber-epoxy matrix composites greatly affects the fraction of hydrogen bonds (H-bonds formed at the fiber-matrix interface. The H-bonds are major contributors to the fiber-matrix interfacial shear strength and play a direct role in the interlaminar shear strength (ILSS of the composite. The H-bond contributions τ to the ILSS and magnitudes KN of the fiber-matrix interfacial stiffness moduli of seven carbon fiber-epoxy matrix composites, subjected to different fiber surface treatments, are calculated from the Morse potential for the interactions of hydroxyl and carboxyl acid groups formed on the carbon fiber surfaces with epoxy receptors. The τ calculations range from 7.7 MPa to 18.4 MPa in magnitude, depending on fiber treatment. The KN calculations fall in the range (2.01 – 4.67 ×1017 N m−3. The average ratio KN/|τ| is calculated to be (2.59 ± 0.043 × 1010 m−1 for the seven composites, suggesting a nearly linear connection between ILSS and H-bonding at the fiber-matrix interfaces. The linear connection indicates that τ may be assessable nondestructively from measurements of KN via a technique such as angle beam ultrasonic spectroscopy.
DNA-binding proteins essential for protein-primed bacteriophage ø29 DNA replication
Directory of Open Access Journals (Sweden)
Margarita Salas
2016-08-01
Full Text Available Bacillus subtilis phage Φ29 has a linear, double-stranded DNA 19 kb long with an inverted terminal repeat of 6 nucleotides and a protein covalently linked to the 5’ ends of the DNA. This protein, called terminal protein (TP, is the primer for the initiation of replication, a reaction catalyzed by the viral DNA polymerase at the two DNA ends. The DNA polymerase further elongates the nascent DNA chain in a processive manner, coupling strand displacement with elongation. The viral protein p5 is a single-stranded DNA binding protein (SSB that binds to the single strands generated by strand displacement during the elongation process. Viral protein p6 is a double-stranded DNA binding protein (DBP that preferentially binds to the origins of replication at the Φ29 DNA ends and is required for the initiation of replication. Both SSB and DBP are essential for Φ29 DNA amplification. This review focuses on the role of these phage DNA-binding proteins in Φ29 DNA replication both in vitro and in vivo, as well as on the implication of several B. subtilis DNA-binding proteins in different processes of the viral cycle. We will revise the enzymatic activities of the Φ29 DNA polymerase: TP-deoxynucleotidylation, processive DNA polymerization coupled to strand displacement, 3’-5’ exonucleolysis and pyrophosphorolysis. The resolution of the Φ29 DNA polymerase structure has shed light on the translocation mechanism and the determinants responsible for processivity and strand displacement. These two properties have made Φ29 DNA polymerase one of the main enzymes used in the current DNA amplification technologies. The determination of the structure of Φ29 TP revealed the existence of three domains: the priming domain, where the primer residue Ser232, as well as Phe230, involved in the determination of the initiating nucleotide, are located, the intermediate domain, involved in DNA polymerase binding, and the N-terminal domain, responsible for DNA binding
Practical Weak-lensing Shear Measurement with Metacalibration
Energy Technology Data Exchange (ETDEWEB)
Sheldon, Erin S. [Brookhaven National Laboratory, Bldg. 510, Upton, NY 11973 (United States); Huff, Eric M. [Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Dr., Pasadena, CA 91109 (United States)
2017-05-20
Metacalibration is a recently introduced method to accurately measure weak gravitational lensing shear using only the available imaging data, without need for prior information about galaxy properties or calibration from simulations. The method involves distorting the image with a small known shear, and calculating the response of a shear estimator to that applied shear. The method was shown to be accurate in moderate-sized simulations with galaxy images that had relatively high signal-to-noise ratios, and without significant selection effects. In this work we introduce a formalism to correct for both shear response and selection biases. We also observe that for images with relatively low signal-to-noise ratios, the correlated noise that arises during the metacalibration process results in significant bias, for which we develop a simple empirical correction. To test this formalism, we created large image simulations based on both parametric models and real galaxy images, including tests with realistic point-spread functions. We varied the point-spread function ellipticity at the five-percent level. In each simulation we applied a small few-percent shear to the galaxy images. We introduced additional challenges that arise in real data, such as detection thresholds, stellar contamination, and missing data. We applied cuts on the measured galaxy properties to induce significant selection effects. Using our formalism, we recovered the input shear with an accuracy better than a part in a thousand in all cases.
Kraus, Emma; Kraus, Kristina; Obser, Tobias; Oyen, Florian; Klemm, Ulrike; Schneppenheim, Reinhard; Brehm, Maria A
2014-12-01
The multimeric form of von Willebrand factor (VWF), is the largest soluble protein in mammals and exhibits a multidomain structure resulting in multiple functions. Upon agonist stimulation endothelial cells secrete VWF multimers from Weibel-Palade bodies into the blood stream where VWF plays an essential role in platelet-dependent primary hemostasis. Elongation of VWF strings on the cells' surface leads to accessibility of VWF binding sites for proteins, such as platelet membrane glycoprotein Ib. The prothrombotic strings are size-regulated by the metalloprotease ADAMTS13 by shear force-activated proteolytic cleavage. VWF string formation was induced by histamine stimulation of HUVEC cells under unidirectional shear flow and VWF strings were detected employing the VWF binding peptide of platelet glycoprotein Ib coupled to latex beads. VWF strings were then used as substrate for kinetic studies of recombinant and plasma ADAMTS13. To investigate specific aspects of the shear-dependent functions of VWF and ADAMTS13, we developed a shear flow assay that allows observation of VWF string formation and their degradation by ADAMTS13 without the need for isolated platelets. Our assay specifically detects VWF strings, can be coupled with fluorescent applications and allows semi-automated, quantitative assessment of recombinant and plasma ADAMTS13 activity. Our assay may serve as a valuable research tool to investigate the biochemical characteristics of VWF and ADAMTS13 under shear flow and could complement diagnostics of von Willebrand Disease and Thrombotic Thrombocytopenic Purpura as it allows detection of shear flow-dependent dysfunction of VWD-associated VWF mutants as well as TTP-associated ADAMTS13 mutants. Copyright © 2014 Elsevier Ltd. All rights reserved.
Caenen, Annette; Pernot, Mathieu; Peirlinck, Mathias; Mertens, Luc; Swillens, Abigail; Segers, Patrick
2018-04-01
Shear wave elastography (SWE) is a potential tool to non-invasively assess cardiac muscle stiffness. This study focused on the effect of the orthotropic material properties and mechanical loading on the performance of cardiac SWE, as it is known that these factors contribute to complex 3D anisotropic shear wave propagation. To investigate the specific impact of these complexities, we constructed a finite element model with an orthotropic material law subjected to different uniaxial stretches to simulate SWE in the stressed cardiac wall. Group and phase speed were analyzed in function of tissue thickness and virtual probe rotation angle. Tissue stretching increased the group and phase speed of the simulated shear wave, especially in the direction of the muscle fiber. As the model provided access to the true fiber orientation and material properties, we assessed the accuracy of two fiber orientation extraction methods based on SWE. We found a higher accuracy (but lower robustness) when extracting fiber orientations based on the location of maximal shear wave speed instead of the angle of the major axis of the ellipsoidal group speed surface. Both methods had a comparable performance for the center region of the cardiac wall, and performed less well towards the edges. Lastly, we also assessed the (theoretical) impact of pathology on shear wave physics and characterization in the model. It was found that SWE was able to detect changes in fiber orientation and material characteristics, potentially associated with cardiac pathologies such as myocardial fibrosis. Furthermore, the model showed clearly altered shear wave patterns for the fibrotic myocardium compared to the healthy myocardium, which forms an initial but promising outcome of this modeling study.
Nongeometrically converted shear waves in marine streamer data
Drijkoningen, G.G.; El Allouche, N.; Thorbecke, J.W.; Bada, G.
2012-01-01
Under certain circumstances, marine streamer data contain nongeometrical shear body wave arrivals that can be used for imaging. These shear waves are generated via an evanescent compressional wave in the water and convert to propagating shear waves at the water bottom. They are called
Correlation of iris biometrics and DNA
DEFF Research Database (Denmark)
Harder, Stine; Clemmensen, Line Katrine Harder; Dahl, Anders Bjorholm
2013-01-01
The presented work concerns prediction of complex human phenotypes from genotypes. We were interested in correlating iris color and texture with DNA. Our data consist of 212 eye images along with DNA: 32 single-nucleotide polymorphisms (SNPs). We used two types of biometrics to describe the eye...... images: One for iris color and one for iris texture. Both biometrics were high dimensional and a sparse principle component analysis (SPCA) reduced the dimensions and resulted in a representation of data with good interpretability. The correlations between the sparse principal components (SPCs......) and the 32 SNPs were found using a canonical correlation analysis (CCA). The result was a single significant canonical correlation (CC) for both biometrics. Each CC comprised two correlated canonical variables, consisting of a linear combination of SPCs and a linear combination of SNPs, respectively...
Helzel, Christiane; Tzavaras, Athanasios
2016-01-01
We consider a kinetic model, which describes the sedimentation of rod-like particles in dilute suspensions under the influence of gravity, presented in Helzel and Tzavaras (submitted for publication). Here we restrict our considerations to shear flow and consider a simplified situation, where the particle orientation is restricted to the plane spanned by the direction of shear and the direction of gravity. For this simplified kinetic model we carry out a linear stability analysis and we derive two different nonlinear macroscopic models which describe the formation of clusters of higher particle density. One of these macroscopic models is based on a diffusive scaling, the other one is based on a so-called quasi-dynamic approximation. Numerical computations, which compare the predictions of the macroscopic models with the kinetic model, complete our presentation.
Helzel, Christiane
2016-07-22
We consider a kinetic model, which describes the sedimentation of rod-like particles in dilute suspensions under the influence of gravity, presented in Helzel and Tzavaras (submitted for publication). Here we restrict our considerations to shear flow and consider a simplified situation, where the particle orientation is restricted to the plane spanned by the direction of shear and the direction of gravity. For this simplified kinetic model we carry out a linear stability analysis and we derive two different nonlinear macroscopic models which describe the formation of clusters of higher particle density. One of these macroscopic models is based on a diffusive scaling, the other one is based on a so-called quasi-dynamic approximation. Numerical computations, which compare the predictions of the macroscopic models with the kinetic model, complete our presentation.
Recent progress in shear punch testing
International Nuclear Information System (INIS)
Hamilton, M.L.; Toloczko, M.B.; Lucas, G.E.
1994-09-01
The shear punch test was developed in response to the needs of the materials development community for small-scale mechanical properties tests. Such tests will be of great importance when a fusion neutron simulation device is built, since such a device is expected to have a limited irradiation volume. The shear punch test blanks a circular disk from a fixed sheet metal specimen, specifically a TEM disk. Load-displacement data generated during the test can be related to uniaxial tensile properties such as yield and ultimate strength. Shear punch and tensile tests were performed at room temperature on a number of unirradiated aluminum, copper, vanadium, and stainless steel alloys and on several irradiated aluminum alloys. Recent results discussed here suggest that the relationship between shear punch strength and tensile strength varies with alloy class, although the relationship determined for the unirradiated condition remains valid for the irradiated aluminum alloys
Stress analysis of shear/compression test
International Nuclear Information System (INIS)
Nishijima, S.; Okada, T.; Ueno, S.
1997-01-01
Stress analysis has been made on the glass fiber reinforced plastics (GFRP) subjected to the combined shear and compression stresses by means of finite element method. The two types of experimental set up were analyzed, that is parallel and series method where the specimen were compressed by tilted jigs which enable to apply the combined stresses, to the specimen. Modified Tsai-Hill criterion was employed to judge the failure under the combined stresses that is the shear strength under the compressive stress. The different failure envelopes were obtained between the two set ups. In the parallel system the shear strength once increased with compressive stress then decreased. On the contrary in the series system the shear strength decreased monotonicly with compressive stress. The difference is caused by the different stress distribution due to the different constraint conditions. The basic parameters which control the failure under the combined stresses will be discussed
Shen, M L; He, Z N; Zhang, X; Duan, H W; Niu, Y; Bin, P; Ye, M; Meng, T; Dai, Y F; Yu, S F; Chen, W; Zheng, Y X
2017-06-06
Objective: To investigate the association between etheno-DNA adduct and the promoter of DNA methylation levels of cyclin dependent kinase inhibitor 2A (P16), Ras association domain family 1 (RASSF1A) and O-6-methylguanine-DNA methyltransferase (MGMT) in workers with occupational exposure to diesel engine exhaust (DEE). Methods: We recruited 124 diesel engine testing workers as DEE exposure group and 112 water pump operator in the same area as control group in Henan province in 2012 using cluster sampling. The demographic data were obtained by questionnaire survey; urine after work and venous blood samples were collected from each subject. The urinary etheno-DNA adducts were detected using UPLC-MS/MS, including 1,N6-etheno-2'-deoxyadenosine (εdA) and 3,N4-etheno-2'-deoxycytidine(εdC). The DNA methylation levels of P16, RASSF1A, and MGMT were evaluated using bisulfite-pyrosequencing assay. The percentage of methylation was expressed as the 5-methylcytosine (5mC) over the sum of cytosines (%5mC). Spearman correlation and multiple linear regression were applied to analyze the association between etheno-DNA adducts and DNA methylation of P16, RASSF1A, and MGMT. Results: The median ( P (25)- P (75)) of urinary εdA level was 230.00 (98.04-470.91) pmol/g creatinine in DEE exposure group, and 102.10 (49.95-194.48) creatinine in control group. The level of εdA was higher in DEE exposure group than control group ( P 0.05) . Multiple linear regression confirmed the negative correlation between εdA and DNA methylation levels of P16, RASSF1A, and MGMT in non-smoking group (β (95 %CI ) was -0.068 (-0.132--0.003), -0.082 (-0.159--0.004) and -0.048 (-0.090--0.007), P values were 0.039, 0.039 and 0.024, respectively). Moreover, εdC was negative associated with DNA methylation level of MGMT in non-smoking group (β (95 %CI ) was -0.094 (-0.179--0.008), P= 0.032). Conclusion: DEE exposure could induce the increased of εdA and decreased of DNA methylation levels of P16, RASSF1A
Seismic shear wall ISP NUPEC's seismic ultimate dynamic response test. Comparison report
International Nuclear Information System (INIS)
1996-01-01
In the seismic design of a nuclear power plant, evaluation of the ultimate strength of the nuclear reactor building is an important subject for assessment of seismic reliability of the plant. In order to carry out the evaluation, the response characteristics of reinforced concrete seismic shear walls up to their ultimate state have to be understood. For this purpose, there is a need to develop reliable non-linear response analysis methods which enables the reliable ultimate strength evaluation of nuclear reactor buildings. Along with this need, many computer codes have been developed. These computer codes are compared. (K.A.)
Directory of Open Access Journals (Sweden)
Nemati Hasan
2011-01-01
Full Text Available A numerical investigation of the two-dimensional laminar flow and heat transfer a rotating circular cylinder with uniform planar shear, where the free-stream velocity varies linearly across the cylinder using Multi-Relaxation-Time Lattice Boltzmann method is conducted. The effects of variation of Reynolds number, rotational speed ratio at shear rate 0.1, blockage ratio 0.1 and Prandtl number 0.71 are studied. The Reynolds number changing from 50 to 160 for three rotational speed ratios of 0, 0.5, 1 is investigated. Results show that flow and heat transfer depends significantly on the rotational speed ratio as well as the Reynolds number. The effect of Reynolds number on the vortex-shedding frequency and period-surface Nusselt numbers is overall very strong compared with rotational speed ratio. Flow and heat conditions characteristics such as lift and drag coefficients, Strouhal number and Nusselt numbers are studied.
Edge-Induced Shear Banding in Entangled Polymeric Fluids.
Hemingway, Ewan J; Fielding, Suzanne M
2018-03-30
Despite decades of research, the question of whether solutions and melts of highly entangled polymers exhibit shear banding as their steady state response to a steadily imposed shear flow remains controversial. From a theoretical viewpoint, an important unanswered question is whether the underlying constitutive curve of shear stress σ as a function of shear rate γ[over ˙] (for states of homogeneous shear) is monotonic, or has a region of negative slope, dσ/dγ[over ˙]<0, which would trigger banding. Attempts to settle the question experimentally via velocimetry of the flow field inside the fluid are often confounded by an instability of the free surface where the sample meets the outside air, known as "edge fracture." Here we show by numerical simulation that in fact even only very modest edge disturbances-which are the precursor of full edge fracture but might well, in themselves, go unnoticed experimentally-can cause strong secondary flows in the form of shear bands that invade deep into the fluid bulk. Crucially, this is true even when the underlying constitutive curve is monotonically increasing, precluding true bulk shear banding in the absence of edge effects.