Login script: Difference between revisions
(Revised settings to go along with latest SPINS set-up file for hood. Clarified explanations a bit more. -- RBLanders) |
(add fragments for sutton, rondeau, pelee) |
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Home directories are shared among hood | Home directories are shared among sutton, pelee, rondeau, hood, bow, minnewanka, waterton, kesagami, kuujjua. If your account uses bash for its login shell on all of these machines, then they will run the same bash login script (such as .profile, .bash_profile). Similarly if your account uses csh (or tcsh) they will run the same csh login script (.cshrc). | ||
This is a Good Thing, except that some paths differ between the systems. Below is some code for bash users that will set the | This is a Good Thing, except that some paths differ between the systems. Below is some code for bash and csh users that will set the recommended environment for each system. | ||
As of September 2016, all new accounts created on hood will have .cshrc and .profile files that are already set up this way so no special steps are needed, and you'll have the | As of September 2016, all new accounts created on hood will have .cshrc and .profile files that are already set up this way so no special steps are needed, and you'll have the recommended paths on all systems. | ||
If your account is older than that, you have two options: | If your account is older than that, you have two options: | ||
# You can run the command "init_home" on hood to get the new .cshrc and .profile files. Your old .cshrc and .profile get renamed, so you can reintegrate from them whatever other customizations you might have made. (This is a good choice if you have made few or no changes to your .cshrc or .profile previously.) | # You can run the command "init_home" on hood to get the new .cshrc and .profile files. Your old .cshrc and .profile get renamed, so you can reintegrate from them whatever other customizations you might have made. (This is a good choice if you have made few or no changes to your .cshrc or .profile previously.) | ||
# You can edit your existing $HOME/.bash_profile | # You can edit your existing $HOME/.bash_profile or $HOME/.cshrc to include the following code. (This is a good choice if you have already customized your .cshrc or .profile a lot.) | ||
Note that the SPINS set-up file for hood relies on these settings for Intel compilers and OpenMPI libraries. | Note that the SPINS set-up file for hood relies on these settings for Intel compilers and OpenMPI libraries. Similarly the recommended MITgcm set-up files rely on these recommended settings as well. | ||
If any of these paths change, please update this wiki page. | If any of these paths change, please update this wiki page. | ||
---- | ---- | ||
For the bash login shell: | |||
<syntaxhighlight lang="bash"> | <syntaxhighlight lang="bash"> | ||
Line 25: | Line 27: | ||
fi | fi | ||
if [ | if [ $HOSTNAME = "bow" ] || [ $HOSTNAME = "minnewanka" ] || [ $HOSTNAME = "waterton" ]; then | ||
# load recommended modules | |||
module load matlab/2020a-research | |||
module load hmpt/2.25 | |||
module load slurm | |||
fi | |||
if [ $HOSTNAME = "fluids-pr1-01" ]; then | |||
# SLURM head node a.k.a. fluidssubmit.math.private | |||
module load slurm | |||
fi | |||
if [ $HOSTNAME = "sutton"] || $HOSTNAME = "pelee" ] || ] $HOTNAME = "rondeau" ]; then | |||
module load matlab/2022b-research | |||
fi | fi | ||
</syntaxhighlight> | |||
---- | |||
For the csh login shell: | |||
<syntaxhighlight lang="csh"> | |||
# | if ( $HOST == "hood" ) then | ||
# Source the Intel compiler suite variables | |||
source /opt/intel/bin/iccvars.csh intel64 | |||
# We don't have Intel MPI, so load the OpenMPI module | |||
module load openmpi-1.10-x86_64 | |||
endif | |||
if ( $HOST == "bow" || $HOST == "minnewanka" || $HOST == "waterton" ) then | |||
# load recommended modules | |||
module load matlab/2020a-research | |||
module load hmpt/2.25 | |||
module load slurm | |||
endif | |||
if ( $HOST == "fluids-pr1-01" ) then | |||
# SLURM head node a.k.a. fluidssubmit.math.private | |||
module load slurm | |||
endif | |||
if ( $HOST == "sutton" || $HOST == "pelee" || $HOST == "rondeau" ) then | |||
module load matlab/2022b-research | |||
endif | |||
</syntaxhighlight> | </syntaxhighlight> |
Latest revision as of 16:55, 17 April 2024
Home directories are shared among sutton, pelee, rondeau, hood, bow, minnewanka, waterton, kesagami, kuujjua. If your account uses bash for its login shell on all of these machines, then they will run the same bash login script (such as .profile, .bash_profile). Similarly if your account uses csh (or tcsh) they will run the same csh login script (.cshrc).
This is a Good Thing, except that some paths differ between the systems. Below is some code for bash and csh users that will set the recommended environment for each system.
As of September 2016, all new accounts created on hood will have .cshrc and .profile files that are already set up this way so no special steps are needed, and you'll have the recommended paths on all systems.
If your account is older than that, you have two options:
- You can run the command "init_home" on hood to get the new .cshrc and .profile files. Your old .cshrc and .profile get renamed, so you can reintegrate from them whatever other customizations you might have made. (This is a good choice if you have made few or no changes to your .cshrc or .profile previously.)
- You can edit your existing $HOME/.bash_profile or $HOME/.cshrc to include the following code. (This is a good choice if you have already customized your .cshrc or .profile a lot.)
Note that the SPINS set-up file for hood relies on these settings for Intel compilers and OpenMPI libraries. Similarly the recommended MITgcm set-up files rely on these recommended settings as well.
If any of these paths change, please update this wiki page.
For the bash login shell:
if [ `hostname -s` = "hood" ]; then
# Source the Intel compiler suite variables
source /opt/intel/bin/iccvars.sh intel64
# We don't have Intel MPI, so use an OpenMPI module
module load openmpi-1.10-x86_64
fi
if [ $HOSTNAME = "bow" ] || [ $HOSTNAME = "minnewanka" ] || [ $HOSTNAME = "waterton" ]; then
# load recommended modules
module load matlab/2020a-research
module load hmpt/2.25
module load slurm
fi
if [ $HOSTNAME = "fluids-pr1-01" ]; then
# SLURM head node a.k.a. fluidssubmit.math.private
module load slurm
fi
if [ $HOSTNAME = "sutton"] || $HOSTNAME = "pelee" ] || ] $HOTNAME = "rondeau" ]; then
module load matlab/2022b-research
fi
For the csh login shell:
if ( $HOST == "hood" ) then
# Source the Intel compiler suite variables
source /opt/intel/bin/iccvars.csh intel64
# We don't have Intel MPI, so load the OpenMPI module
module load openmpi-1.10-x86_64
endif
if ( $HOST == "bow" || $HOST == "minnewanka" || $HOST == "waterton" ) then
# load recommended modules
module load matlab/2020a-research
module load hmpt/2.25
module load slurm
endif
if ( $HOST == "fluids-pr1-01" ) then
# SLURM head node a.k.a. fluidssubmit.math.private
module load slurm
endif
if ( $HOST == "sutton" || $HOST == "pelee" || $HOST == "rondeau" ) then
module load matlab/2022b-research
endif