Login script: Difference between revisions

From Fluids Wiki
Jump to navigation Jump to search
(Revised settings to go along with latest SPINS set-up file for hood. Clarified explanations a bit more. -- RBLanders)
(add fragments for sutton, rondeau, pelee)
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
Home directories are shared among hood/thelon/winisk/kazan. If your account uses bash for its login shell on all of these machines, then they will run the same bash login script (such as .profile, .bash_profile). Similarly if your account uses csh (or tcsh) they will run the same csh login script (.cshrc).
Home directories are shared among sutton, pelee, rondeau, hood, bow, minnewanka, waterton, kesagami, kuujjua. If your account uses bash for its login shell on all of these machines, then they will run the same bash login script (such as .profile, .bash_profile). Similarly if your account uses csh (or tcsh) they will run the same csh login script (.cshrc).


This is a Good Thing, except that some paths differ between the systems. Below is some code for bash users that will set the correct paths by checking the current system.
This is a Good Thing, except that some paths differ between the systems. Below is some code for bash and csh users that will set the recommended environment for each system.


As of September 2016, all new accounts created on hood will have .cshrc and .profile files that are already set up this way so no special steps are needed, and you'll have the correct paths on all four systems.
As of September 2016, all new accounts created on hood will have .cshrc and .profile files that are already set up this way so no special steps are needed, and you'll have the recommended paths on all systems.


If your account is older than that, you have two options:
If your account is older than that, you have two options:


# You can run the command "init_home" on hood to get the new .cshrc and .profile files.  Your old .cshrc and .profile get renamed, so you can reintegrate from them whatever other customizations you might have made. (This is a good choice if you have made few or no changes to your .cshrc or .profile previously.)
# You can run the command "init_home" on hood to get the new .cshrc and .profile files.  Your old .cshrc and .profile get renamed, so you can reintegrate from them whatever other customizations you might have made. (This is a good choice if you have made few or no changes to your .cshrc or .profile previously.)
# You can edit your existing $HOME/.bash_profile (assuming you use bash) to include the following code. (This is a good choice if you have already customized your .cshrc or .profile a lot.)
# You can edit your existing $HOME/.bash_profile or $HOME/.cshrc to include the following code. (This is a good choice if you have already customized your .cshrc or .profile a lot.)


Note that the SPINS set-up file for hood relies on these settings for Intel compilers and OpenMPI libraries.
Note that the SPINS set-up file for hood relies on these settings for Intel compilers and OpenMPI libraries. Similarly the recommended MITgcm set-up files rely on these recommended settings as well.


If any of these paths change, please update this wiki page.
If any of these paths change, please update this wiki page.


----
----
For the bash login shell:


<syntaxhighlight lang="bash">
<syntaxhighlight lang="bash">
Line 25: Line 27:
fi
fi


if [ `hostname -s` = "thelon" ]; then
if [ $HOSTNAME = "bow" ] || [ $HOSTNAME = "minnewanka" ] || [ $HOSTNAME = "waterton" ]; then
  # Source the Intel compiler suite variables
    # load recommended modules
  source /opt/intel/Compiler/11.1/064/bin/iccvars.sh intel64
    module load matlab/2020a-research
  source /opt/intel/Compiler/11.1/064/bin/ifortvars.sh intel64
    module load hmpt/2.25
    module load slurm
fi
if [ $HOSTNAME = "fluids-pr1-01" ]; then
    # SLURM head node a.k.a. fluidssubmit.math.private
    module load slurm
fi
 
if [ $HOSTNAME = "sutton"] || $HOSTNAME = "pelee" ] || ] $HOTNAME = "rondeau" ]; then
    module load matlab/2022b-research
fi
fi


if [ `hostname -s` = "winisk" ] || [ `hostname -s` == "kazan" ]; then
</syntaxhighlight>
  # Source the Intel compiler suite variables
 
  source /opt/intel/Compiler/11.1/064/bin/iccvars.sh ia64
----
  source /opt/intel/Compiler/11.1/064/bin/ifortvars.sh ia64
 
For the csh login shell:
 
<syntaxhighlight lang="csh">


   # Ensure that mpirun is in the PATH
if ( $HOST == "hood" ) then
   export PATH=$PATH:/opt/sgi/mpt/mpt-2.01/bin
    # Source the Intel compiler suite variables
    source /opt/intel/bin/iccvars.csh intel64
    
    # We don't have Intel MPI, so load the OpenMPI module
    module load openmpi-1.10-x86_64
       
endif    
 
if ( $HOST == "bow" || $HOST == "minnewanka" || $HOST == "waterton" ) then
    # load recommended modules
    module load matlab/2020a-research
    module load hmpt/2.25
    module load slurm
endif 
if ( $HOST == "fluids-pr1-01" ) then
    # SLURM head node a.k.a. fluidssubmit.math.private
    module load slurm
endif


  # Ensure that the MPI library can be found at runtime
if ( $HOST == "sutton" || $HOST == "pelee" || $HOST == "rondeau" ) then
  export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/sgi/mpt/mpt-2.01/lib/
    module load matlab/2022b-research
endif 


  # Add the SCSL paths
  export LD_LIBRARY_PATH=/opt/scsl/lib:$LD_LIBRARY_PATH
  export INCLUDE=/opt/scsl/include:$INCLUDE
fi
</syntaxhighlight>
</syntaxhighlight>

Latest revision as of 16:55, 17 April 2024

Home directories are shared among sutton, pelee, rondeau, hood, bow, minnewanka, waterton, kesagami, kuujjua. If your account uses bash for its login shell on all of these machines, then they will run the same bash login script (such as .profile, .bash_profile). Similarly if your account uses csh (or tcsh) they will run the same csh login script (.cshrc).

This is a Good Thing, except that some paths differ between the systems. Below is some code for bash and csh users that will set the recommended environment for each system.

As of September 2016, all new accounts created on hood will have .cshrc and .profile files that are already set up this way so no special steps are needed, and you'll have the recommended paths on all systems.

If your account is older than that, you have two options:

  1. You can run the command "init_home" on hood to get the new .cshrc and .profile files. Your old .cshrc and .profile get renamed, so you can reintegrate from them whatever other customizations you might have made. (This is a good choice if you have made few or no changes to your .cshrc or .profile previously.)
  2. You can edit your existing $HOME/.bash_profile or $HOME/.cshrc to include the following code. (This is a good choice if you have already customized your .cshrc or .profile a lot.)

Note that the SPINS set-up file for hood relies on these settings for Intel compilers and OpenMPI libraries. Similarly the recommended MITgcm set-up files rely on these recommended settings as well.

If any of these paths change, please update this wiki page.


For the bash login shell:

if [ `hostname -s` = "hood" ]; then
  # Source the Intel compiler suite variables
  source /opt/intel/bin/iccvars.sh intel64

  # We don't have Intel MPI, so use an OpenMPI module
  module load openmpi-1.10-x86_64
fi

if [ $HOSTNAME = "bow" ] || [ $HOSTNAME = "minnewanka" ] || [ $HOSTNAME = "waterton" ]; then
    # load recommended modules
    module load matlab/2020a-research
    module load hmpt/2.25
    module load slurm
fi
if [ $HOSTNAME = "fluids-pr1-01" ]; then
    # SLURM head node a.k.a. fluidssubmit.math.private
    module load slurm
fi

if [ $HOSTNAME = "sutton"] || $HOSTNAME = "pelee" ] || ] $HOTNAME = "rondeau" ]; then
    module load matlab/2022b-research
fi

For the csh login shell:

if ( $HOST == "hood" ) then
    # Source the Intel compiler suite variables
    source /opt/intel/bin/iccvars.csh intel64
  
    # We don't have Intel MPI, so load the OpenMPI module
    module load openmpi-1.10-x86_64
        
endif   
   
if ( $HOST == "bow" || $HOST == "minnewanka" || $HOST == "waterton" ) then
    # load recommended modules 
    module load matlab/2020a-research
    module load hmpt/2.25
    module load slurm
endif   
if ( $HOST == "fluids-pr1-01" ) then
    # SLURM head node a.k.a. fluidssubmit.math.private
    module load slurm
endif

if ( $HOST == "sutton" || $HOST == "pelee" || $HOST == "rondeau" ) then
    module load matlab/2022b-research
endif